المؤلفون: Rebecca R. Murphy, Jared O’Connell, Anthony J. Cox, Ole Schulz-Trieglaff

المصدر: PeerJ, Vol 3, p e996 (2015)

مصطلحات موضوعية: De novo assembly, Mate pair, Genome assembly, Error correction, Scaffolding, Insert size, Medicine, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://peerj.com/articles/996.pdf; https://peerj.com/articles/996/; https://doaj.org/toc/2167-8359

URL الوصول: https://doaj.org/article/23bb7b07b8d7406981f34508f7dc2231

المؤلفون: Bmc Bioinformatics, Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebr, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-trieglaff, Ra Zerck, Knut Reinert, Oliver Kohlbacher

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/33/b7/BMC_Bioinformatics_2008_Mar_26_9_163.tar.gz

وصف الملف: application/zip

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.281.4338

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.281.4338

المؤلفون: Egidijus Machtejevas, Knut Reinert, Hartmut Schlueter, Joachim Thiemann, Klaus Unger, Ole Schulz-trieglaff, Hartmut Schlüter, Klaus Unger K. K

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.biodatamining.org/content/pdf/1756-0381-2-4.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.219.2184; http://www.biodatamining.org/content/pdf/1756-0381-2-4.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.219.2184
http://www.biodatamining.org/content/pdf/1756-0381-2-4.pdf

المؤلفون: Ole Schulz-trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebr, Knut Reinert

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.inf.fu-berlin.de/inst/ag-bio/FILES/ROOT/Publications/reinert/SchulzTrieglaff_PepQuant06.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.218.3617; http://www.inf.fu-berlin.de/inst/ag-bio/FILES/ROOT/Publications/reinert/SchulzTrieglaff_PepQuant06.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.218.3617
http://www.inf.fu-berlin.de/inst/ag-bio/FILES/ROOT/Publications/reinert/SchulzTrieglaff_PepQuant06.pdf

المؤلفون: Lodewyk F. A. Wessels, Jan O. Korbel, Jasmijn A. Baaijens, Francesca Chiaromonte, Gunnar W. Klau, Kai Ye, Alexander Schönhuth, Francesca D. Ciccarelli, Tobias Marschall, Robin Cijvat, Matthias Schlesner, Adam M. Novak, Eleazar Eskin, Ashley D. Sanders, Sven Rahmann, Carl Shneider, Wigard P. Kloosterman, Knut Reinert, Eric-Wubbo Lameijer, Sandra Smit, Benedict Paten, Mohammed El-Kebir, Valentina Boeva, Evan E. Eichler, Cornelia M. van Duijn, Can Alkan, Jeroen de Ridder, Benjamin Langmead, Dick de Ridder, Jiayin Wang, David Porubsky, Fabio Vandin, Erwin Datema, Ben Raphael, Paul Kersey, Nadia Pisanti, Corinna Ernst, Klaasjan G. Ouwens, Y. Zhang, Thomas Abeel, Erik Garrison, Veli Mäkinen, Paul I.W. de Bakker, Victor Guryev, Siavash Sheikhizadeh, Manja Marz, Marcel Martin, Ole Schulz-Trieglaff, Pieter B. Neerincx, Rayan Chikhi, Eric Rivals, John C. Mu, Raoul J. P. Bonnal, Bas E. Dutilh, Paul Medvedev, Louis Dijkstra, Pierre Peterlongo, Ali Ghaffaari, Daniel Valenzuela

المساهمون: Epidemiology, Gastroenterology & Hepatology, Erasmus MC other, Alkan, Can, Saarland University [Saarbrücken], Max Planck Institute for Informatics [Saarbrücken], Karlsruhe Institute of Technology (KIT), Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Delft Bioinformatics Lab [Delft], Delft University of Technology (TU Delft), Computational Science Lab [Amsterdam], University of Amsterdam [Amsterdam] (UvA), Theoretical Biology & Bioinformatics [Utrecht], University Medical Center [Utrecht], Universidade Federal do Rio de Janeiro (UFRJ), European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Section genetics [Utrecht], Center for Molecular medicine [Utrecht], University Medical Center [Utrecht]-University Medical Center [Utrecht], Helsinki Institute for Information Technology, Department of Computer Science [Helsinki], Falculty of Science [Helsinki], University of Helsinki-University of Helsinki, Howard Hughes Medical Institute [Santa Cruz] (HHMI), Center for Biomolecular Science & Engineering, European Research Institute for the Biology of Ageing [Groningen] (ERIBA), University Medical Center Groningen [Groningen] (UMCG), Institut de Biologie Computationnelle (IBC), Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Department of Computer Engineering (Bilkent-CS), Bilkent, Life Sciences [Amsterdam] (MAC4), Centrum Wiskunde & Informatica (CWI), Institut Cochin (IC UM3 (UMR 8104 / U1016)), Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), PSL Research University (PSL), Centre de Bioinformatique (CBIO), MINES ParisTech - École nationale supérieure des mines de Paris-PSL Research University (PSL), Cancer et génôme: Bioinformatique, biostatistiques et épidémiologie d'un système complexe, MINES ParisTech - École nationale supérieure des mines de Paris-Institut Curie-Institut National de la Santé et de la Recherche Médicale (INSERM), Integrative Biology Program [Milano], Istituto Nazionale Genetica Molecolare [Milano] (INGM), Department of Statistics [Pennsylvania], Pennsylvania State University (Penn State), Penn State System-Penn State System, Bioinformatics and Sequence Analysis (BONSAI), Université de Lille, Sciences et Technologies-Inria Lille - Nord Europe, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189 (CRIStAL), Centre National de la Recherche Scientifique (CNRS)-Université de Lille-Ecole Centrale de Lille-Centre National de la Recherche Scientifique (CNRS)-Université de Lille-Ecole Centrale de Lille-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS), Monet DB Solutions [Amsterdam], KeyGene [Wageningen], Department of Epidemiology [Rotterdam], Erasmus University Medical Center [Rotterdam] (Erasmus MC), Howard Hughes Medical Institute [Berkeley], University of California [Berkeley], University of California-University of California, Genome Informatics [Duisburg], Universität Duisburg-Essen [Essen], Departement of human genetics [Los Angeles], Computer Science Department [Los Angeles] (UCLA), University of California [Los Angeles] (UCLA), University of California-University of California-University of California [Los Angeles] (UCLA), The Wellcome Trust Sanger Institute [Cambridge], Equipe de recherche européenne en algorithmique et biologie formelle et expérimentale (ERABLE), Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Universiteit Leiden [Leiden], Department of Computer Science [Baltimore], Johns Hopkins University (JHU), Centre de Physique des Particules de Marseille (CPPM), Centre National de la Recherche Scientifique (CNRS)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Aix Marseille Université (AMU), University of Pennsylvania [Philadelphia], China Agricultural University (CAU), University of Groningen [Groningen], Department of Biological Psychology [Amsterdam], Vrije Universiteit Amsterdam [Amsterdam] (VU), Scalable, Optimized and Parallel Algorithms for Genomics (GenScale), Inria Rennes – Bretagne Atlantique, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-GESTION DES DONNÉES ET DE LA CONNAISSANCE (IRISA-D7), Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Rennes 1 (UR1), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), Dipartimento di Informatica [Pisa] (DI), University of Pisa - Università di Pisa, Faculty of Computer Science [Dortmund], Technische Universität Dortmund [Dortmund] (TU), Service de Pneumologie A [Paris], AP-HP - Hôpital Bichat - Claude Bernard [Paris], Department of Mathematics and Computer Science (Freie Universität Berlin), Freie Universität Berlin, Wageningen University and Research Centre [Wageningen] (WUR), Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Division of Theoretical Bioinformatics [Heidelberg], German Cancer Research Center - Deutsches Krebsforschungszentrum [Heidelberg] (DKFZ), Illumina Cambridge, Illumina, Terry Fox Laboratory, BC Cancer Agency (BCCRC)-British Columbia Cancer Agency Research Centre, Bioinformatics Group [Wageningen], Leiden Observatory [Leiden], Regeneron Pharmaceuticals [Tarrytown], Shaanxi University of Science and Technology, Netherlands Cancer Institute (NKI), Antoni van Leeuwenhoek Hospital, Universita degli Studi di Padova, The Netherlands Organization for Scientific Research (NWO) Vidi (639.072.309 to A.S., 864.14.004 to B.E.D.), CAPES/BRASIL (to B.E.D.), the Academy of Finland (284598 [CoECGR] to V.M. and D.V.), the Russian Scientific Foundation (14–11–00826 to L.D.), Institut de Biologie Computationnelle (ANR-11-BINF- 0002 to E.R.), and the French Colib’read project (ANR–12– BS02–0008 to E.R.). NSFC 31671372 (to K. Y.), the Dutch Graduate School for Experimental Plant Sciences (054EPS15 to S.S.), the EMGO Institute for Health and Care Research (EMGO+) to K.O., the National Human Genome Research Institute (1U54HG007990 [BD2K] to B.P. and A.M.N., 5U41HG007234 [GENCODE] to B.P.), the W. M. Keck Foundation (DT06172015 to B.P. and A.M.N.), the Simons Foundation (SFLIFE# 351901 to B.P. and A.M.N.), the ARCS Foundation (2014–15 ARCS fellowship to A.M.N.), Edward Schulak (Edward Schulak Fellowship in Genomics to A.M.N.), ANR-11-BINF-0002,IBC,Institut de Biologie Computationnelle de Montpellier(2011), ANR-12-BS02-0008,Colib'read,Méthodes d'extraction d'information biologique dans les données HTS non assemblées(2012), Karlsruhe Institute of Technology ( KIT ), Broad Institute of MIT and Harvard ( BROAD INSTITUTE ), Harvard Medical School [Boston] ( HMS ) -Massachusetts General Hospital [Boston] ( MGH ) -Massachusetts Institute of Technology ( MIT ), Delft University of Technology ( TU Delft ), University of Amsterdam [Amsterdam] ( UvA ), Universidade Federal do Rio de Janeiro ( UFRJ ), European Bioinformatics Institute [Hinxton] ( EMBL-EBI ), European Molecular Biology Laboratory [Hinxton], Department of Computer Science, Howard Hughes Medical Institute [Santa Cruz] ( HHMI ), European Research Institute for the Biology of Ageing [Groningen] ( ERIBA ), University Medical Center Groningen [Groningen] ( UMCG ), Institut de Biologie Computationnelle ( IBC ), Centre de Coopération Internationale en Recherche Agronomique pour le Développement ( CIRAD ) -Institut National de la Recherche Agronomique ( INRA ) -Institut National de Recherche en Informatique et en Automatique ( Inria ) -Université de Montpellier ( UM ) -Centre National de la Recherche Scientifique ( CNRS ), Méthodes et Algorithmes pour la Bioinformatique ( MAB ), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier ( LIRMM ), Université de Montpellier ( UM ) -Centre National de la Recherche Scientifique ( CNRS ) -Université de Montpellier ( UM ) -Centre National de la Recherche Scientifique ( CNRS ), Department of Computer Engineering ( Bilkent-CS ), Life Sciences [Amsterdam] ( MAC4 ), Centrum Wiskunde & Informatica ( CWI ), Institut Cochin ( UM3 (UMR 8104 / U1016) ), Université Paris Descartes - Paris 5 ( UPD5 ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Centre National de la Recherche Scientifique ( CNRS ), PSL Research University ( PSL ), Centre de Bioinformatique ( CBIO ), MINES ParisTech - École nationale supérieure des mines de Paris-PSL Research University ( PSL ), MINES ParisTech - École nationale supérieure des mines de Paris-Institut National de la Santé et de la Recherche Médicale ( INSERM ) -INSTITUT CURIE, Istituto Nazionale Genetica Molecolare [Milano] ( INGM ), PennState University [Pennsylvania] ( PSU ), Bioinformatics and Sequence Analysis ( BONSAI ), Institut National de Recherche en Informatique et en Automatique ( Inria ) -Institut National de Recherche en Informatique et en Automatique ( Inria ) -Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189 ( CRIStAL ), Ecole Centrale de Lille-Institut National de Recherche en Informatique et en Automatique ( Inria ) -Institut Mines-Télécom [Paris]-Université de Lille-Centre National de la Recherche Scientifique ( CNRS ) -Ecole Centrale de Lille-Institut Mines-Télécom [Paris]-Université de Lille-Centre National de la Recherche Scientifique ( CNRS ) -Centre National de la Recherche Scientifique ( CNRS ), Centre National de la Recherche Scientifique ( CNRS ), Erasmus University Medical Center [Rotterdam], Computer Science Department [Los Angeles] ( UCLA ), University of California at Los Angeles [Los Angeles] ( UCLA ) -University of California at Los Angeles [Los Angeles] ( UCLA ), Equipe de recherche européenne en algorithmique et biologie formelle et expérimentale ( ERABLE ), Institut National de Recherche en Informatique et en Automatique ( Inria ) -Institut National de Recherche en Informatique et en Automatique ( Inria ), Johns Hopkins University ( JHU ), Centre de Physique des Particules de Marseille ( CPPM ), Centre National de la Recherche Scientifique ( CNRS ) -Institut National de Physique Nucléaire et de Physique des Particules du CNRS ( IN2P3 ) -Aix Marseille Université ( AMU ), China Agricultural University ( CAU ), Vrije Universiteit Amsterdam [Amsterdam] ( VU ), Scalable, Optimized and Parallel Algorithms for Genomics ( GenScale ), Institut National de Recherche en Informatique et en Automatique ( Inria ) -Institut National de Recherche en Informatique et en Automatique ( Inria ) -GESTION DES DONNÉES ET DE LA CONNAISSANCE ( IRISA_D7 ), Institut de Recherche en Informatique et Systèmes Aléatoires ( IRISA ), Université de Rennes 1 ( UR1 ), Université de Rennes ( UNIV-RENNES ) -Université de Rennes ( UNIV-RENNES ) -Institut National des Sciences Appliquées - Rennes ( INSA Rennes ) -Université de Bretagne Sud ( UBS ) -École normale supérieure - Rennes ( ENS Rennes ) -Institut National de Recherche en Informatique et en Automatique ( Inria ) -CentraleSupélec-Centre National de la Recherche Scientifique ( CNRS ) -IMT Atlantique Bretagne-Pays de la Loire ( IMT Atlantique ) -Université de Rennes 1 ( UR1 ), Université de Rennes ( UNIV-RENNES ) -Université de Rennes ( UNIV-RENNES ) -Institut National des Sciences Appliquées - Rennes ( INSA Rennes ) -Université de Bretagne Sud ( UBS ) -École normale supérieure - Rennes ( ENS Rennes ) -Institut National de Recherche en Informatique et en Automatique ( Inria ) -CentraleSupélec-Centre National de la Recherche Scientifique ( CNRS ) -IMT Atlantique Bretagne-Pays de la Loire ( IMT Atlantique ) -Institut de Recherche en Informatique et Systèmes Aléatoires ( IRISA ), Université de Rennes ( UNIV-RENNES ) -Université de Rennes ( UNIV-RENNES ) -Institut National des Sciences Appliquées - Rennes ( INSA Rennes ) -Université de Bretagne Sud ( UBS ) -École normale supérieure - Rennes ( ENS Rennes ) -CentraleSupélec-Centre National de la Recherche Scientifique ( CNRS ) -IMT Atlantique Bretagne-Pays de la Loire ( IMT Atlantique ), Dipartimento di Informatica [Pisa] ( DI ), University of Pisa [Pisa], Technische Universität Dortmund [Dortmund] ( TU ), Department of Mathematics and Computer Science ( Freie Universität Berlin ), Freie Universität Berlin [Berlin], Wageningen University and Research Centre [Wageningen] ( WUR ), K.U.Leuven, German Cancer Research Center [Heidelberg] ( DKFZ ), Helmholtz-Gemeinschaft-Helmholtz-Gemeinschaft, BC Cancer Agency ( BCCRC ) -British Columbia Cancer Agency Research Centre, Netherlands Cancer Institute ( NKI ), ANR-11-BINF-0002,IBC,Institut de Biologie Computationnelle de Montpellier ( 2011 ), ANR-12-BS02-0008,Colib'read,Méthodes d'extraction d'information biologique dans les données HTS non assemblées ( 2012 ), Helsinki Institute for Information Technology (HIIT), Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Aalto University, Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Helsingin yliopisto = Helsingfors universitet = University of Helsinki, University of California [Santa Cruz] (UC Santa Cruz), University of California (UC), Bilkent University [Ankara], Université Paris sciences et lettres (PSL), Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), Cancer et génome: Bioinformatique, biostatistiques et épidémiologie d'un système complexe, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), Department of Statistics [PennState], Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), University of Washington [Seattle], Howard Hughes Medical Institute (HHMI), Universität Duisburg-Essen = University of Duisburg-Essen [Essen], University of California (UC)-University of California (UC)-University of California [Los Angeles] (UCLA), University of California (UC)-University of California (UC), Universiteit Leiden, Aix Marseille Université (AMU)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS), University of Pennsylvania, Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Department of Mathematics and Computer Science, Wageningen University and Research [Wageningen] (WUR), Università degli Studi di Padova = University of Padua (Unipd), ANR-11-BINF-0002,IBC,Institut de biologie Computationnelle(2011), Aalto University-University of Helsinki, University of California [Santa Cruz] (UCSC), University of California, Université de Montpellier (UM)-Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Centre National de la Recherche Scientifique (CNRS)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM), MINES ParisTech - École nationale supérieure des mines de Paris, Centre National de la Recherche Scientifique (CNRS)-Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Université de Lille-Centrale Lille-Centre National de la Recherche Scientifique (CNRS)-Université de Lille-Centrale Lille-Centre National de la Recherche Scientifique (CNRS)-Université de Lille, Sciences et Technologies-Inria Lille - Nord Europe, Université de Bretagne Sud (UBS)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National de Recherche en Informatique et en Automatique (Inria)-École normale supérieure - Rennes (ENS Rennes)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-CentraleSupélec-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Bretagne Sud (UBS)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-École normale supérieure - Rennes (ENS Rennes)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Groningen Research Institute for Asthma and COPD (GRIAC)

المصدر: Briefings in Bioinformatics, 19(1), 118-135. Oxford University Press
Briefings in Bioinformatics, 19, 118-135
Briefings in Bioinformatics
Briefings in Bioinformatics, 19(1). Oxford University Press
Briefings in Bioinformatics, 19(1), 118-135
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. 〈10.1093/bib/bbw089〉
Briefings in Bioinformatics, 19, 1, pp. 118-135
Briefings in Bioinformatics, 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics 19 (2018) 1

مصطلحات موضوعية: 0301 basic medicine, Data structures, Computer science, Medizin, 02 engineering and technology, computer.software_genre, Genome, Computational and Statistical Genetics, data structures, haplotypes, pan-genome, read mapping, sequence graph, Tumours of the digestive tract Radboud Institute for Molecular Life Sciences [Radboudumc 14], 0303 health sciences, education.field_of_study, Point (typography), Genomics, Papers, Data mining, Sequence graph, Computational problem, Construct (philosophy), Algorithms, Human, Information Systems, Bioinformatics, 0206 medical engineering, Population, Pan-genome, 03 medical and health sciences, [ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM], Bioinformatica, Humans, Haplotypes, Read mapping, Computational Biology, Genome, Human, Software, Molecular Biology, education, Representation (mathematics), 030304 developmental biology, Computational genomics, Data structure, Data science, Human genetics, 030104 developmental biology, Paradigm shift, ddc:004, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], EPS, computer, 020602 bioinformatics

وصف الملف: application/pdf; image/pdf; application/octet-stream

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::302b4b6d3da2df08953959b0850432fb
https://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&origin=inward&scp=85041170263

المؤلفون: Anthony J. Cox, Lilian Janin, Ole Schulz-Trieglaff

المصدر: Bioinformatics. 30:2796-2801

مصطلحات موضوعية: Statistics and Probability, FASTQ format, bepress|Life Sciences|Genetics and Genomics|Genomics, Genotype, Computer science, Terabyte, computer.software_genre, Biochemistry, DNA sequencing, chemistry.chemical_compound, Neoplasms, Humans, Quantitative Biology - Genomics, Computer Simulation, Nucleotide, Molecular Biology, Genomics (q-bio.GN), chemistry.chemical_classification, Genome, Information retrieval, Genome, Human, bepress|Life Sciences|Biology, High-Throughput Nucleotide Sequencing, Structural variant, DNA, Sequence Analysis, DNA, Data Compression, File format, Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, chemistry, FOS: Biological sciences, Data mining, computer, Algorithms, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::11173721474dab732d974830e7ec0eb4
https://doi.org/10.1093/bioinformatics/btu387

المؤلفون: Anthony J. Cox, Ole Schulz-Trieglaff, Rudy Arthur, Jared O'Connell

مصطلحات موضوعية: 0301 basic medicine, Statistics and Probability, Male, Computer science, Sample (statistics), Biochemistry, 03 medical and health sciences, Consistency (database systems), 0302 clinical medicine, Phylogenetics, Kinship, Cluster Analysis, Humans, Family, Cluster analysis, Molecular Biology, Phylogeny, Information retrieval, Genome, Human, Sequence Analysis, DNA, Data science, Computer Science Applications, Pedigree, Computational Mathematics, 030104 developmental biology, Computational Theory and Mathematics, Statistical genetics, Female, 030217 neurology & neurosurgery, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f70c833f37eeb0b336f08ef3da9c2a8f
https://doi.org/10.1101/047829

المؤلفون: Graham R. Bignell, Thomas R. Connor, Ludmil B. Alexandrov, Lisa Murray, Sean Humphray, Bee Ling Ng, Geoffrey Paul Smith, Wendy S.W. Wong, Zemin Ning, Michael R. Stratton, Shujun Luo, Zhi-Ping Feng, Anthony J. Cox, Peter J. Campbell, Philip Tedder, Albert J. Vilella, Niall Anthony Gormley, David J. McBride, Simon R. Harris, Keiran Raine, Bronwen Aken, Elizabeth P. Murchison, R. Keira Cheetham, Carolyn Tregidgo, Matthew M. Hims, P. Andrew Futreal, Sergii Ivakhno, Dirk J. Evers, Markus J. Bauer, Isabelle Rasolonjatovo, Yong Gu, Zoya Kingsbury, Simon D. M. White, William Cheng, Fengtang Yang, Anne-Maree Pearse, Amber E. Alsop, Beiyuan Fu, Gregory M. Woods, Gary P. Schroth, Stephen M. J. Searle, Kevin Hall, Mark Kowarsky, David R. Bentley, David C. Wedge, Irina Khrebtukova, Ole Schulz-Trieglaff, Jennifer Becq, Caitlin Stewart, Nigel P. Carter, Richard Shaw, John Marshall, Alexandre Kreiss, Zhihao Ding, Anthony T. Papenfuss, Russell J. Grocock

المصدر: Cell

مصطلحات موضوعية: Male, 0106 biological sciences, Lineage (genetic), Molecular Sequence Data, Devil facial tumour disease, Genomics, Biology, 010603 evolutionary biology, 01 natural sciences, Somatic evolution in cancer, Genome, Article, Genomic Instability, Tasmania, General Biochemistry, Genetics and Molecular Biology, Clonal Evolution, 03 medical and health sciences, Tasmanian devil, medicine, Animals, 030304 developmental biology, Marsupial, Genetics, 0303 health sciences, Biochemistry, Genetics and Molecular Biology(all), Endangered Species, medicine.disease, biology.organism_classification, Marsupialia, Sarcophilus, Mutation, Female, Facial Neoplasms, Genome-Wide Association Study

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bd7569c1e9d8f2b6e974e32cc2b7c49c

المؤلفون: Christian G. Huber, Rene Hussong, Clemens Gröpl, Knut Reinert, Andreas Hildebrandt, Andreas Leinenbach, Ole Schulz-Trieglaff

المصدر: Journal of Computational Biology. 15:685-704

مصطلحات موضوعية: Halobacterium, Computer science, Mass spectrometry, Mass Spectrometry, Sweep line algorithm, Wavelet, Liquid chromatography–mass spectrometry, Genetics, Animals, Humans, Molecular Biology, Myoglobin, Elution, business.industry, Pattern recognition, Computational Mathematics, Computational Theory and Mathematics, Modeling and Simulation, Regression Analysis, Monoisotopic mass, Artificial intelligence, Peptides, business, Algorithms, Software, Chromatography, Liquid

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::115df02138aa2dd752be19fae81f44ce
https://doi.org/10.1089/cmb.2007.0117

المؤلفون: Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert

المصدر: ISMB/ECCB (Supplement of Bioinformatics)

مصطلحات موضوعية: Statistics and Probability, Proteome, Computer science, Tandem mass spectrometry, Mass spectrometry, Bioinformatics, Peptide Mapping, Biochemistry, Mass Spectrometry, Sequence Analysis, Protein, Liquid chromatography–mass spectrometry, Amino Acid Sequence, Cluster analysis, Shotgun proteomics, Molecular Biology, business.industry, Elution, Pattern recognition, Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, Affine transformation, Artificial intelligence, Noise (video), business, Sequence Alignment, Algorithms, Chromatography, Liquid

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7ada6d70116621fa02ebda1625e7242
https://doi.org/10.1093/bioinformatics/btm209

المؤلفون: Anthony J. Cox, Ole Schulz-Trieglaff, Rudy Arthur, Jared O'Connell

المصدر: Bioinformatics (Oxford, England). 32(15)

مصطلحات موضوعية: 0301 basic medicine, Statistics and Probability, Linkage disequilibrium, Source code, Genotype, Computer science, media_common.quotation_subject, Normal Distribution, Multivariate normal distribution, Machine learning, computer.software_genre, Biochemistry, Linkage Disequilibrium, Normal distribution, 03 medical and health sciences, Feature (machine learning), Humans, Hidden Markov model, Molecular Biology, media_common, Whole genome sequencing, business.industry, Pattern recognition, Quantitative Biology::Genomics, Computer Science Applications, Data set, Computational Mathematics, 030104 developmental biology, Random variate, Computational Theory and Mathematics, Feature (computer vision), Artificial intelligence, business, Algorithm, computer, Algorithms, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34eccbabfe1c760b4ed02517c43d8dd5
https://pubmed.ncbi.nlm.nih.gov/27153730

المؤلفون: Anthony J. Cox, Semyon Kruglyak, Felix Schlesinger, Richard Shaw, Xiaoyu Chen, Ole Schulz-Trieglaff, Christopher T. Saunders, Bret Barnes

مصطلحات موضوعية: Genetics, Annotation, Community resource, Structural variant, Computational biology, Biology, Indel, Rapid detection, DNA sequencing

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c384c9e87e2a9699042ff5f0ebec01b

المؤلفون: Anthony J. Cox, Bret Barnes, Felix Schlesinger, Xiaoyu Chen, Ole Schulz-Trieglaff, Semyon Kruglyak, Morten Källberg, Christopher T. Saunders, Richard Shaw

المصدر: Bioinformatics (Oxford, England). 32(8)

مصطلحات موضوعية: 0301 basic medicine, Statistics and Probability, Source code, media_common.quotation_subject, Genomics, Computational biology, Biology, Biochemistry, Genome, Rapid detection, DNA sequencing, Germline, 03 medical and health sciences, Annotation, INDEL Mutation, Neoplasms, Humans, Indel, Molecular Biology, media_common, Genetics, High-Throughput Nucleotide Sequencing, DNA, Neoplasm, Computer Science Applications, Computational Mathematics, 030104 developmental biology, Computational Theory and Mathematics, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::694f6326df155c260cf4be26c1e7b807
https://pubmed.ncbi.nlm.nih.gov/26647377

المؤلفون: Jared O'Connell, Ole Schulz-Trieglaff, Rebecca R. Murphy, Anthony J. Cox

المصدر: PeerJ, Vol 3, p e996 (2015)
PeerJ

مصطلحات موضوعية: Software documentation, Computer science, Bioinformatics, Sequencing data, Sequence assembly, lcsh:Medicine, Mate pair, computer.software_genre, Scaffolding, General Biochemistry, Genetics and Molecular Biology, Computational Science, Assembly quality, Genetics, De novo assembly, Error correction, computer.programming_language, Genome assembly, business.industry, General Neuroscience, Statistics, lcsh:R, General Medicine, Genomics, Automated error detection, Python (programming language), Misassembly detection, Misassembly, Open source, Artificial intelligence, Data mining, General Agricultural and Biological Sciences, Error detection and correction, business, computer, Natural language processing, Insert size, Reference genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::01d5aeaba44a46672206b061db4f9970
https://peerj.com/articles/996.pdf

المؤلفون: Jared O'Connell, Anthony J. Cox, Emma Carlson, Niall Anthony Gormley, Matthew M. Hims, Ole Schulz-Trieglaff

مصطلحات موضوعية: Statistics and Probability, Source code, Computer science, media_common.quotation_subject, Sequence assembly, Computational biology, Bacterial genome size, Mate pair, Biology, computer.software_genre, Biochemistry, Adapter (genetics), Software, Molecular Biology, Gene Library, media_common, Bacteria, business.industry, Computational Biology, High-Throughput Nucleotide Sequencing, Sequence Analysis, DNA, Computer Science Applications, Computational Mathematics, Computational Theory and Mathematics, Trimming, Data mining, business, computer, Genome, Bacterial

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae04a0e1a9cfa58e7b7bffa3a602f6d3

المؤلفون: Elizabeth Murchison, Ole Schulz-Trieglaff, Zemin Ning, Ludmil Alexandrov, Markus Bauer, Beiyuan Fu, Matthew Hims, Zhihao Ding, Sergii Ivakhno, Caitlin Stewart, Bee Ling Ng Bee Ling Ng, Wendy Wong, Bronwen Aken, Simon White, Amber Alsop, Jennifer Becq, Graham Bignell, R. Keira Cheetham, William Cheng, Thomas Connor, Anthony Cox, Zhi Ping Feng, Yong Gu, Russell Grocock, Simon Harris, Irina Khrebtukova, Zoya Kingsbury, Mark Kowarsky, Alexandre Kreiss, Shujun Luo, John Marshall, David McBride, Lisa Murray, Anne-Maree Pearse, Keiran Raine, Isabelle Rasolonjatovo, Richard Shaw, Philip Tedder, Carolyn Tregidgo, Albert Vilella, David Wedge, Gregory Woods, Niall Gormley, Sean Humphray, Gary Schroth, Geoffrey Smith, Kevin Hall, Stephen Searle, Nigel Carter, Anthony Papenfuss, P. Futreal, Peter Campbell, Fengtang Yang, David Bentley, Dirk J. Evers, Michael R. Stratton1

مصطلحات موضوعية: Genomics, animal cell, article, cancer genetics, controlled study, face cancer, female, gene sequence, genetic analysis, genotype, marsupial, nonhuman, nucleic acid base substitution, nucleotide sequence, priority journal, sarcophilus harrisii, somatic mutation

Relation: 10779/rmit.27485721.v1; https://figshare.com/articles/journal_contribution/Genome_sequencing_and_analysis_of_the_Tasmanian_devil_and_its_transmissible_cancer/27485721

الاتاحة: https://figshare.com/articles/journal_contribution/Genome_sequencing_and_analysis_of_the_Tasmanian_devil_and_its_transmissible_cancer/27485721

المؤلفون: Claire Chewapreecha, Mandy Sanders, Gordon Dougan, Claudio U. Köser, Matthew T. G. Holden, Geoffrey Paul Smith, Stephen D. Bentley, Ole Schulz-Trieglaff, Nicholas M. Brown, Louise Fraser, Julian Parkhill, Matthew J. Ellington, Mark C. Enright, Edward J. P. Cartwright, Amanda Ogilvy-Stuart, Jason Betley, Nicholas J. Croucher, Li Yang Hsu, Simon R. Harris, Sharon J. Peacock

المصدر: The New England journal of medicine. 366(24)

مصطلحات موضوعية: DNA, Bacterial, Methicillin-Resistant Staphylococcus aureus, Bacteremia, Microbial Sensitivity Tests, Biology, medicine.disease_cause, Staphylococcal infections, Disease cluster, Genome, Polymorphism, Single Nucleotide, Article, Disease Outbreaks, Intensive Care Units, Neonatal, medicine, Humans, Typing, Phylogeny, Retrospective Studies, Whole genome sequencing, Cross Infection, Infant, Newborn, Outbreak, General Medicine, Sequence Analysis, DNA, Staphylococcal Infections, medicine.disease, Methicillin-resistant Staphylococcus aureus, Virology, Phenotype, Methicillin Resistance, Genome, Bacterial, Reference genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f970c99f86126e612abd7fec88fcc791
https://pubmed.ncbi.nlm.nih.gov/22693998

المؤلفون: Glenn Tesler, Dirk J. Evers, Joyclyn Yee-Greenbaum, Mary-Jane Lombardo, Geoffrey Paul Smith, Ole Schulz-Trieglaff, Douglas B. Rusch, Mark Novotny, Louise Fraser, Hamidreza Chitsaz, Jonathan H. Badger, Christopher L. Dupont, Niall Anthony Gormley, Pavel A. Pevzner, Roger S. Lasken

المصدر: Nature biotechnology

مصطلحات موضوعية: Deltaproteobacteria, Staphylococcus aureus, Biomedical Engineering, Sequence assembly, Bioengineering, Genomics, Bacterial genome size, Computational biology, Biology, Applied Microbiology and Biotechnology, Genome, Article, Contig Mapping, 03 medical and health sciences, chemistry.chemical_compound, Single-cell analysis, Escherichia coli, 030304 developmental biology, Sequence (medicine), Genetics, 0303 health sciences, Likelihood Functions, Bacteria, Base Sequence, 030306 microbiology, Sequence Analysis, DNA, chemistry, Molecular Medicine, Single-Cell Analysis, Databases, Nucleic Acid, DNA, Algorithms, Genome, Bacterial, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::afb73b25f5c181befce3ebb06470ead0
https://pubmed.ncbi.nlm.nih.gov/22148156

المؤلفون: Thomas Royce, Paula Kokko-Gonzales, Lina Chen, Gonzalo R. Ordóñez, Philip J. Stephens, Ole Schulz-Trieglaff, Ignacio Varela, Michael R. Stratton, Peter J. Campbell, Meng-Lay Lin, Lynda Chin, R. Keira Cheetham, Sarah Edkins, P. Andrew Futreal, Matthew M. Hims, Richard J. Carter, Markus J. Bauer, Christian D. Haudenschild, Catherine Leroy, Lukasz Szajkowski, Erin Pleasance, Adam Butler, Jon W. Teague, Zoya Kingsbury, David J. McBride, Christopher Greenman, Lucy Stebbings, Julie Alipaz, Terena James, John Marshall, Laura Mudie, Sean Humphray, Mingming Jia, David Beare, Kai Ye, Andrew Menzies, David Williamson, Russell J. Grocock, Graham R. Bignell, Anastassia Spiridou, Niall Anthony Gormley, Zemin Ning, Anthony J. Cox, David R. Bentley, Mark T. Ross

المصدر: Nature, 463(7278), 191

مصطلحات موضوعية: Adult, Male, DNA Repair, Ultraviolet Rays, DNA repair, DNA Mutational Analysis, Gene Dosage, Loss of Heterozygosity, Genomics, Biology, medicine.disease_cause, Polymorphism, Single Nucleotide, Genome, Article, Germline mutation, Cell Line, Tumor, Neoplasms, medicine, Humans, Precision Medicine, Melanoma, Sequence Deletion, Genetics, Mutation, Multidisciplinary, Genome, Human, Cancer, medicine.disease, nucleotide excision-repair ets transcription factor myeloid-leukemia genome skin-cancer pathways melanoma carcinogenesis epidemiology mechanisms expression, MicroRNAs, Mutagenesis, Insertional, Human genome, Carcinogenesis, DNA Damage, Genes, Neoplasm

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d8eab9724070b463b05c94e44897333e
https://hdl.handle.net/1887/108464

المؤلفون: Andreas Bertsch, Knut Reinert, Rene Hussong, Andreas Hildebrandt, Marc Sturm, Clemens Gröpl, Ole Schulz-Trieglaff, Eva Lange, Nico Pfeifer, Oliver Kohlbacher, Alexandra Zerck

المصدر: BMC Bioinformatics, Vol 9, Iss 1, p 163 (2008)
BMC Bioinformatics

مصطلحات موضوعية: Computer science, Proteomics, Mass spectrometry, computer.software_genre, Bioinformatics, lcsh:Computer applications to medicine. Medical informatics, Biochemistry, Mass Spectrometry, Metabolomics, Structural Biology, Molecular Biology, lcsh:QH301-705.5, business.industry, Applied Mathematics, Data structure, Computer Science Applications, Software framework, lcsh:Biology (General), lcsh:R858-859.7, Programming Languages, DNA microarray, Software engineering, business, Mass spectrometry data format, computer, Software, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::165a9ac9e14a9120c2d0d0da85124467
http://www.biomedcentral.com/1471-2105/9/163