المؤلفون: Madeira, Fábio, Madhusoodanan, Nandana, Lee, Joonheung, Eusebi, Alberto, Niewielska, Ania, Tivey, Adrian R. N., Meacham, Stuart, Lopez, Rodrigo, Butcher, Sarah

المصدر: Current Protocols ; volume 4, issue 6 ; ISSN 2691-1299 2691-1299

الاتاحة: http://dx.doi.org/10.1002/cpz1.1065
https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpz1.1065

المؤلفون: Madeira, Fábio, Madhusoodanan, Nandana, Lee, Joonheung, Eusebi, Alberto, Niewielska, Ania, Tivey, Adrian R N, Lopez, Rodrigo, Butcher, Sarah

المساهمون: EMBL-EBI

المصدر: Nucleic Acids Research ; volume 52, issue W1, page W521-W525 ; ISSN 0305-1048 1362-4962

الاتاحة: https://doi.org/10.1093/nar/gkae241
https://academic.oup.com/nar/article-pdf/52/W1/W521/58436149/gkae241.pdf

المؤلفون: Soiland-Reyes, Stian, Bayarri, Genís, Andrio, Pau, Long, Robin, Lowe, Douglas, Niewielska, Ania, Hospital, Adam, Groth, Paul

المصدر: Soiland-Reyes , S , Bayarri , G , Andrio , P , Long , R , Lowe , D , Niewielska , A , Hospital , A & Groth , P 2022 , ' Making Canonical Workflow Building Blocks Interoperable across Workflow Languages ' , Data Intelligence , vol. 4 , no. 2 , pp. 342-357 . https://doi.org/10.5281/zenodo.5727730 , https://doi.org/10.1162/dint_a_00135

مصطلحات موضوعية: Computational tools, Containers, FAIR, FAIR digital object (FDO), BioExcel Building Blocks library (BioBB), Canonical Workflow Frameworks for Research (CWFR), Interoperable, Scientific workflows, Software packaging

الاتاحة: https://research.manchester.ac.uk/en/publications/11a064d8-7b87-45bb-8244-bc95e347827c
https://doi.org/10.5281/zenodo.5727730
http://www.scopus.com/inward/record.url?scp=85129627235&partnerID=8YFLogxK
https://s11.no/2022/phd/canonical-workflow-building-blocks/

المؤلفون: Rehm, Heidi L, Page, Angela JH, Smith, Lindsay, Adams, Jeremy B, Alterovitz, Gil, Babb, Lawrence J, Barkley, Maxmillian P, Baudis, Michael, Beauvais, Michael JS, Beck, Tim, Beckmann, Jacques S, Beltran, Sergi, Bernick, David, Bernier, Alexander, Bonfield, James K, Boughtwood, Tiffany F, Bourque, Guillaume, Bowers, Sarion R, Brookes, Anthony J, Brudno, Michael, Brush, Matthew H, Bujold, David, Burdett, Tony, Buske, Orion J, Cabili, Moran N, Cameron, Daniel L, Carroll, Robert J, Casas-Silva, Esmeralda, Chakravarty, Debyani, Chaudhari, Bimal P, Chen, Shu Hui, Cherry, J Michael, Chung, Justina, Cline, Melissa, Clissold, Hayley L, Cook-Deegan, Robert M, Courtot, Mélanie, Cunningham, Fiona, Cupak, Miro, Davies, Robert M, Denisko, Danielle, Doerr, Megan J, Dolman, Lena I, Dove, Edward S, Dursi, L Jonathan, Dyke, Stephanie OM, Eddy, James A, Eilbeck, Karen, Ellrott, Kyle P, Fairley, Susan, Fakhro, Khalid A, Firth, Helen V, Fitzsimons, Michael S, Fiume, Marc, Flicek, Paul, Fore, Ian M, Freeberg, Mallory A, Freimuth, Robert R, Fromont, Lauren A, Fuerth, Jonathan, Gaff, Clara L, Gan, Weiniu, Ghanaim, Elena M, Glazer, David, Green, Robert C, Griffith, Malachi, Griffith, Obi L, Grossman, Robert L, Groza, Tudor, Guidry Auvil, Jaime M, Guigó, Roderic, Gupta, Dipayan, Haendel, Melissa A, Hamosh, Ada, Hansen, David P, Hart, Reece K, Hartley, Dean Mitchell, Haussler, David, Hendricks-Sturrup, Rachele M, Ho, Calvin WL, Hobb, Ashley E, Hoffman, Michael M, Hofmann, Oliver M, Holub, Petr, Hsu, Jacob Shujui, Hubaux, Jean-Pierre, Hunt, Sarah E, Husami, Ammar, Jacobsen, Julius O, Jamuar, Saumya S, Janes, Elizabeth L, Jeanson, Francis, Jené, Aina, Johns, Amber L, Joly, Yann, Jones, Steven JM, Kanitz, Alexander, Kato, Kazuto, Keane, Thomas M, Kekesi-Lafrance, Kristina, Kelleher, Jerome, Kerry, Giselle, Khor, Seik-Soon, Knoppers, Bartha M, Konopko, Melissa A, Kosaki, Kenjiro, Kuba, Martin, Lawson, Jonathan, Leinonen, Rasko, Li, Stephanie, Lin, Michael F, Linden, Mikael, Liu, Xianglin, Udara Liyanage, Isuru, Lopez, Javier, Lucassen, Anneke M, Lukowski, Michael, Mann, Alice L, Marshall, John, Mattioni, Michele, Metke-Jimenez, Alejandro, Middleton, Anna, Milne, Richard J, Molnár-Gábor, Fruzsina, Mulder, Nicola, Munoz-Torres, Monica C, Nag, Rishi, Nakagawa, Hidewaki, Nasir, Jamal, Navarro, Arcadi, Nelson, Tristan H, Niewielska, Ania, Nisselle, Amy, Niu, Jeffrey, Nyrönen, Tommi H, O'Connor, Brian D, Oesterle, Sabine, Ogishima, Soichi, Wang, Vivian Ota, Paglione, Laura AD, Palumbo, Emilio, Parkinson, Helen E, Philippakis, Anthony A, Pizarro, Angel D, Prlic, Andreas, Rambla, Jordi, Rendon, Augusto, Rider, Renee A, Robinson, Peter N, Rodarmer, Kurt W, Rodriguez, Laura Lyman, Rubin, Alan F, Rueda, Manuel, Rushton, Gregory A, Ryan, Rosalyn S, Saunders, Gary I, Schuilenburg, Helen, Schwede, Torsten, Scollen, Serena, Senf, Alexander, Sheffield, Nathan C, Skantharajah, Neerjah, Smith, Albert V, Sofia, Heidi J, Spalding, Dylan, Spurdle, Amanda B, Stark, Zornitza, Stein, Lincoln D, Suematsu, Makoto, Tan, Patrick, Tedds, Jonathan A, Thomson, Alastair A, Thorogood, Adrian, Tickle, Timothy L, Tokunaga, Katsushi, Törnroos, Juha, Torrents, David, Upchurch, Sean, Valencia, Alfonso, Guimera, Roman Valls, Vamathevan, Jessica, Varma, Susheel, Vears, Danya F, Viner, Coby, Voisin, Craig, Wagner, Alex H, Wallace, Susan E, Walsh, Brian P, Williams, Marc S, Winkler, Eva C, Wold, Barbara J, Wood, Grant M, Woolley, J Patrick, Yamasaki, Chisato, Yates, Andrew D, Yung, Christina K, Zass, Lyndon J, Zaytseva, Ksenia, Zhang, Junjun, Goodhand, Peter, North, Kathryn, Birney, Ewan

المصدر: nlmid: 9918284260106676 ; essn: 2666-979X

مصطلحات موضوعية: 31 Biological Sciences, 3105 Genetics, Biotechnology, Genetics, Human Genome, 8.3 Policy, ethics, and research governance, Generic health relevance, 3 Good Health and Well Being

وصف الملف: application/pdf

Relation: https://www.repository.cam.ac.uk/handle/1810/334447

الاتاحة: https://www.repository.cam.ac.uk/handle/1810/334447
https://doi.org/10.17863/CAM.81862

المؤلفون: Soiland Reyes, Stian, Bayarri, Genís, Andrio, Pau, Long, Robin, Lowe, Douglas, Niewielska, Ania, Hospital, Adam, Groth, Paul

المساهمون: Barcelona Supercomputing Center

مصطلحات موضوعية: Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Workflow management systems, Bioinformatics, Computational tools, Workflow languages, Execution platforms, Reproducibility, Research software, Programari, Simulació per ordinador

وصف الملف: 16 p.; application/pdf

Relation: info:eu-repo/grantAgreement/EC/H2020/823830/EU/BioExcel Centre of Excellence for ComputationalBiomolecular Research/BioExcel-2; info:eu-repo/grantAgreement/EC/H2020/675728/EU/Centre of Excellence for Biomolecular Research/BioExcel; info:eu-repo/grantAgreement/EC/H2020/871075/EU/Connect and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services/ELIXIR-CONVERGE; Soiland Reyes, S. [et al.]. Making Canonical Workflow Building Blocks Interoperable across Workflow Languages. "Data Intelligence", Març 2022, p. 1-16.; http://hdl.handle.net/2117/364027

الاتاحة: http://hdl.handle.net/2117/364027
https://doi.org/10.1162/dint_a_00135

المؤلفون: Heidi L. Rehm, Angela J.H. Page, Lindsay Smith, Jeremy B. Adams, Gil Alterovitz, Lawrence J. Babb, Maxmillian P. Barkley, Michael Baudis, Michael J.S. Beauvais, Tim Beck, Jacques S. Beckmann, Sergi Beltran, David Bernick, Alexander Bernier, James K. Bonfield, Tiffany F. Boughtwood, Guillaume Bourque, Sarion R. Bowers, Anthony J. Brookes, Michael Brudno, Matthew H. Brush, David Bujold, Tony Burdett, Orion J. Buske, Moran N. Cabili, Daniel L. Cameron, Robert J. Carroll, Esmeralda Casas-Silva, Debyani Chakravarty, Bimal P. Chaudhari, Shu Hui Chen, J. Michael Cherry, Justina Chung, Melissa Cline, Hayley L. Clissold, Robert M. Cook-Deegan, Mélanie Courtot, Fiona Cunningham, Miro Cupak, Robert M. Davies, Danielle Denisko, Megan J. Doerr, Lena I. Dolman, Edward S. Dove, L. Jonathan Dursi, Stephanie O.M. Dyke, James A. Eddy, Karen Eilbeck, Kyle P. Ellrott, Susan Fairley, Khalid A. Fakhro, Helen V. Firth, Michael S. Fitzsimons, Marc Fiume, Paul Flicek, Ian M. Fore, Mallory A. Freeberg, Robert R. Freimuth, Lauren A. Fromont, Jonathan Fuerth, Clara L. Gaff, Weiniu Gan, Elena M. Ghanaim, David Glazer, Robert C. Green, Malachi Griffith, Obi L. Griffith, Robert L. Grossman, Tudor Groza, Jaime M. Guidry Auvil, Roderic Guigó, Dipayan Gupta, Melissa A. Haendel, Ada Hamosh, David P. Hansen, Reece K. Hart, Dean Mitchell Hartley, David Haussler, Rachele M. Hendricks-Sturrup, Calvin W.L. Ho, Ashley E. Hobb, Michael M. Hoffman, Oliver M. Hofmann, Petr Holub, Jacob Shujui Hsu, Jean-Pierre Hubaux, Sarah E. Hunt, Ammar Husami, Julius O. Jacobsen, Saumya S. Jamuar, Elizabeth L. Janes, Francis Jeanson, Aina Jené, Amber L. Johns, Yann Joly, Steven J.M. Jones, Alexander Kanitz, Kazuto Kato, Thomas M. Keane, Kristina Kekesi-Lafrance, Jerome Kelleher, Giselle Kerry, Seik-Soon Khor, Bartha M. Knoppers, Melissa A. Konopko, Kenjiro Kosaki, Martin Kuba, Jonathan Lawson, Rasko Leinonen, Stephanie Li, Michael F. Lin, Mikael Linden, Xianglin Liu, Isuru Udara Liyanage, Javier Lopez, Anneke M. Lucassen, Michael Lukowski, Alice L. Mann, John Marshall, Michele Mattioni, Alejandro Metke-Jimenez, Anna Middleton, Richard J. Milne, Fruzsina Molnár-Gábor, Nicola Mulder, Monica C. Munoz-Torres, Rishi Nag, Hidewaki Nakagawa, Jamal Nasir, Arcadi Navarro, Tristan H. Nelson, Ania Niewielska, Amy Nisselle, Jeffrey Niu, Tommi H. Nyrönen, Brian D. O’Connor, Sabine Oesterle, Soichi Ogishima, Vivian Ota Wang, Laura A.D. Paglione, Emilio Palumbo, Helen E. Parkinson, Anthony A. Philippakis, Angel D. Pizarro, Andreas Prlic, Jordi Rambla, Augusto Rendon, Renee A. Rider, Peter N. Robinson, Kurt W. Rodarmer, Laura Lyman Rodriguez, Alan F. Rubin, Manuel Rueda, Gregory A. Rushton, Rosalyn S. Ryan, Gary I. Saunders, Helen Schuilenburg, Torsten Schwede, Serena Scollen, Alexander Senf, Nathan C. Sheffield, Neerjah Skantharajah, Albert V. Smith, Heidi J. Sofia, Dylan Spalding, Amanda B. Spurdle, Zornitza Stark, Lincoln D. Stein, Makoto Suematsu, Patrick Tan, Jonathan A. Tedds, Alastair A. Thomson, Adrian Thorogood, Timothy L. Tickle, Katsushi Tokunaga, Juha Törnroos, David Torrents, Sean Upchurch, Alfonso Valencia, Roman Valls Guimera, Jessica Vamathevan, Susheel Varma, Danya F. Vears, Coby Viner, Craig Voisin, Alex H. Wagner, Susan E. Wallace, Brian P. Walsh, Marc S. Williams, Eva C. Winkler, Barbara J. Wold, Grant M. Wood, J. Patrick Woolley, Chisato Yamasaki, Andrew D. Yates, Christina K. Yung, Lyndon J. Zass, Ksenia Zaytseva, Junjun Zhang, Peter Goodhand, Kathryn North, Ewan Birney

المصدر: Cell Genomics, Vol 1, Iss 2, Pp 100029- (2021)

مصطلحات موضوعية: data sharing, data access, precision medicine, learning health system, genomics, standards, Genetics, QH426-470, Internal medicine, RC31-1245

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666979X21000367; https://doaj.org/toc/2666-979X

URL الوصول: https://doaj.org/article/8843ca96b8394774b7bfa2e49aa0584a

المؤلفون: Newhouse, Steven, Wagener, Harald, Dieckmann, Marius, Niewielska, Ania, Clark-Casey, Justin, Insua, Santiago

مصطلحات موضوعية: Life science research infrastructures, Cloud technologies, Sensitive data hosting, Policy framework processing, Managed platform for data analysis

Relation: https://zenodo.org/communities/eosc-life; https://zenodo.org/communities/eu; https://doi.org/10.5281/zenodo.6555208; https://doi.org/10.5281/zenodo.6555209; oai:zenodo.org:6555209

الاتاحة: https://doi.org/10.5281/zenodo.6555209

المؤلفون: Adam Hospital, Genís Bayarri, Stian Soiland- Reyes, Douglas Lowe, Josep Lluís Gelpí, Pau Andrio, Daniele Lezzi, Jorge Ejarque, Sarah Butcher, Ania Niewielska, Alberto Eusebi, Esther Sala, Aristarc Surinach, Martí Municoy, Rosa Maria Badia, Rodrigo Vargas, Alexandre Bonvin

مصطلحات موضوعية: computational workflows

Relation: https://doi.org/10.48546/workflowhub.workflow.120.2; https://doi.org/10.48546/workflowhub.workflow.279.1; https://doi.org/10.48546/workflowhub.workflow.276.1; https://workflowhub.eu/workflows/277?version=1; https://doi.org/10.48546/workflowhub.workflow.200.1; https://doi.org/10.48546/workflowhub.workflow.201.1; https://doi.org/10.48546/workflowhub.workflow.54.2; https://doi.org/10.48546/workflowhub.workflow.255.1; https://doi.org/10.48546/workflowhub.workflow.280.2; https://workflowhub.eu/workflows/294?version=1; https://doi.org/10.48546/workflowhub.workflow.56.3; https://doi.org/10.48546/workflowhub.workflow.258.1; https://doi.org/10.48546/workflowhub.workflow.281.1; https://workflowhub.eu/workflows/295?version=1; https://doi.org/10.48546/workflowhub.workflow.55.3; https://doi.org/10.48546/workflowhub.workflow.328.1; https://doi.org/10.48546/workflowhub.workflow.127.2; https://doi.org/10.48546/workflowhub.workflow.128.1; https://doi.org/10.48546/workflowhub.workflow.129.1; https://doi.org/10.48546/workflowhub.workflow.259.1; https://doi.org/10.48546/workflowhub.workflow.282.1; https://workflowhub.eu/workflows/296?version=1; https://doi.org/10.48546/workflowhub.workflow.130.1; https://doi.org/10.48546/workflowhub.workflow.260.1; https://doi.org/10.48546/workflowhub.workflow.283.1; https://workflowhub.eu/workflows/297?version=1; https://doi.org/10.48546/workflowhub.workflow.131.1; https://doi.org/10.48546/workflowhub.workflow.261.1; https://doi.org/10.48546/workflowhub.workflow.284.1; https://workflowhub.eu/workflows/298?version=1; https://doi.org/10.48546/workflowhub.workflow.132.1; https://doi.org/10.48546/workflowhub.workflow.196.1; https://doi.org/10.48546/workflowhub.workflow.262.1; https://doi.org/10.48546/workflowhub.workflow.285.1; https://workflowhub.eu/workflows/299?version=1; https://doi.org/10.48546/workflowhub.workflow.195.1; https://doi.org/10.48546/workflowhub.workflow.286.1; https://doi.org/10.1038/s41597-019-0177-4; https://doi.org/10.1177/1094342015594678; https://doi.org/10.5281/zenodo.4605654; https://doi.org/10.1038/s41592-018-0046-7; https://doi.org/10.1021/acs.jproteome.0c00904; https://doi.org/10.1186/gb-2010-11-8-r86; https://doi.org/10.1093/nar/gkw343; https://doi.org/10.1007/978-3-540-78246-9_38; https://doi.org/10.3233/DS-190026; https://doi.org/10.1038/nbt.3820; https://doi.org/10.1093/nar/gkac380; https://doi.org/10.1093/bioinformatics/btac316; https://doi.org/10.3233/DS-210053; https://doi.org/10.1162/dint_a_00135; https://doi.org/10.1145/3486897; https://doi.org/10.1162/dint_a_00134; https://doi.org/10.1371/journal.pcbi.1009823; https://doi.org/10.1101/2022.04.25.489389; https://doi.org/10.1016/j.xgen.2021.100029; https://doi.org/10.1002/wcms.1622; https://doi.org/10.1038/s42005-020-00403-4; https://doi.org/10.1021/acs.jcim.9b00665; https://mmb.irbbarcelona.org/biobb; https://zenodo.org/communities/esciencelab; https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.5281/zenodo.7034861; https://doi.org/10.5281/zenodo.7034862; oai:zenodo.org:7034862

الاتاحة: https://doi.org/10.5281/zenodo.7034862

المؤلفون: Stian Soiland-Reyes, Genís Bayarri, Pau Andrio, Robin Long, Douglas Lowe, Ania Niewielska, Adam Hospital, Paul Groth

Relation: https://doi.org/10.1038/s41597-019-0177-4; https://doi.org/10.1016/j.future.2017.01.012; https://doi.org/10.3390/publications8020021; https://iswc2017.semanticweb.org/paper-579/; https://doi.org/10.1162/dint_a_00033; https://doi.org/10.1016/j.cels.2018.03.014; https://doi.org/10.5281/zenodo.4540432; https://arxiv.org/abs/arXiv:2101.10883; https://doi.org/10.3233/ds-190026; https://arxiv.org/abs/arXiv:2006.08589; https://doi.org/10.1371/journal.pbio.2001414; https://doi.org/10.1007/s41019-017-0050-4; https://doi.org/10.5281/zenodo.3250687; https://doi.org/10.1126/science.aah6168; https://bioexcel.eu/; https://pypi.org/project/biobb/; https://bioconda.github.io/search.html?q=biobb; https://biocontainers.pro/registry?all_fields_search=biobb; https://biobb.readthedocs.io/; http://mmb.irbbarcelona.org/biobb/workflows/tutorials/md_setup; https://bioexcel-binder.tsi.ebi.ac.uk/v2/gh/bioexcel/biobb_wf_md_setup/master?filepath=biobb_wf_md_setup%2Fnotebooks%2Fbiobb_MDsetup_tutorial.ipynb; https://bio.tools/biobb; https://bioschemas.org/profiles/ComputationalTool/0.5-DRAFT/; https://workflowhub.eu/programmes/2; https://github.com/bioexcel/biobb_adapters/tree/v0.1.4/biobb_adapters/cwl; https://toolshed.g2.bx.psu.edu/repository?repository_id=e23296b413014cfc; https://github.com/bioexcel/biobb_adapters/tree/v0.1.4/biobb_adapters/pycompss; https://github.com/bioexcel/biobb; https://mmb.irbbarcelona.org/biobb-api/rest; https://mmb.irbbarcelona.org/biobb-api/rest/swagger.json; http://mmb.irbbarcelona.org/biobb/documentation/source; https://bioschemas.org/; http://w3id.org/ro/crate/; https://www.commonwl.org/; https://osf.io/3rekv/; https://osf.io/qcv9b; https://doi.org/10.1109/mcse.2021.3052101; https://doi.org/10.1093/bib/bbn003; https://doi.org/10.1186/gb4161; https://doi.org/10.1145/3486897; https://doi.org/10.1145/2110497.2110504; https://doi.org/10.1111/ecog.01552; https://doi.org/10.1038/s41592-018-0046-7; https://doi.org/10.1093/gigascience/giaa157; https://doi.org/10.25080/majora-4af1f417-011; https://doi.org/10.1093/bioinformatics/btl272; https://hdl.handle.net/[10.48546/workflowhub.workflow.194.1; https://doi.org/10.48546/workflowhub.workflow.201.1; https://doi.org/10.48546/workflowhub.workflow.29.3; https://doi.org/10.48546/workflowhub.workflow.120.2; https://doi.org/10.48546/workflowhub.workflow.200.1; https://zenodo.org/communities/esciencelab; https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.5281/zenodo.4602854; https://doi.org/10.5281/zenodo.5542553; oai:zenodo.org:5542553

الاتاحة: https://doi.org/10.5281/zenodo.5542553

المؤلفون: Niewielska, Malwina

المصدر: Dzieciństwo. Literatura i Kultura; Vol 3 No 1 (2021): Warsaw in Children’s and Young Adult Culture – Childhood and Adolescence in Warsaw; 150-169 ; Dzieciństwo. Literatura i Kultura; Tom 3 Nr 1 (2021): Warszawa w kulturze dziecięcej i młodzieżowej – dzieciństwo i młodość w Warszawie; 150-169 ; 2657-9510

وصف الملف: application/pdf

Relation: https://www.journals.polon.uw.edu.pl/index.php/dlk/article/view/713/627; https://www.journals.polon.uw.edu.pl/index.php/dlk/article/view/713

الاتاحة: https://www.journals.polon.uw.edu.pl/index.php/dlk/article/view/713
https://doi.org/10.32798/dlk.713

المؤلفون: Rehm, Heidi L, Page, Angela J H, Smith, Lindsay, Adams, Jeremy B, Alterovitz, Gil, Babb, Lawrence J, Barkley, Maxmillian P, Baudis, Michael, Beauvais, Michael J S, Beck, Tim, Beckmann, Jacques S, Beltran, Sergi, Bernick, David, Bernier, Alexander, Bonfield, James K, Boughtwood, Tiffany F, Bourque, Guillaume, Bowers, Sarion R, Brookes, Anthony J, Brudno, Michael, Brush, Matthew H, Bujold, David, Burdett, Tony, Buske, Orion J, Cabili, Moran N, Cameron, Daniel L, Carroll, Robert J, Casas-Silva, Esmeralda, Chakravarty, Debyani, Chaudhari, Bimal P, Chen, Shu Hui, Cherry, J Michael, Chung, Justina, Cline, Melissa, Clissold, Hayley L, Cook-Deegan, Robert M, Courtot, Mélanie, Cunningham, Fiona, Cupak, Miro, Davies, Robert M, Denisko, Danielle, Doerr, Megan J, Dolman, Lena I, Dove, Edward S, Dursi, L Jonathan, Dyke, Stephanie O M, Eddy, James A, Eilbeck, Karen, Ellrott, Kyle P, Fairley, Susan, Fakhro, Khalid A, Firth, Helen V, Fitzsimons, Michael S, Fiume, Marc, Flicek, Paul, Fore, Ian M, Freeberg, Mallory A, Freimuth, Robert R, Fromont, Lauren A, Fuerth, Jonathan, Gaff, Clara L, Gan, Weiniu, Ghanaim, Elena M, Glazer, David, Green, Robert C, Griffith, Malachi, Griffith, Obi L, Grossman, Robert L, Groza, Tudor, Auvil, Jaime M Guidry, Guigó, Roderic, Gupta, Dipayan, Haendel, Melissa A, Hamosh, Ada, Hansen, David P, Hart, Reece K, Hartley, Dean Mitchell, Haussler, David, Hendricks-Sturrup, Rachele M, Ho, Calvin W L, Hobb, Ashley E, Hoffman, Michael M, Hofmann, Oliver M, Holub, Petr, Hsu, Jacob Shujui, Hubaux, Jean-Pierre, Hunt, Sarah E, Husami, Ammar, Jacobsen, Julius O, Jamuar, Saumya S, Janes, Elizabeth L, Jeanson, Francis, Jené, Aina, Johns, Amber L, Joly, Yann, Jones, Steven J M, Kanitz, Alexander, Kato, Kazuto, Keane, Thomas M, Kekesi-Lafrance, Kristina, Kelleher, Jerome, Kerry, Giselle, Khor, Seik-Soon, Knoppers, Bartha M, Konopko, Melissa A, Kosaki, Kenjiro, Kuba, Martin, Lawson, Jonathan, Leinonen, Rasko, Li, Stephanie, Lin, Michael F, Linden, Mikael, Liu, Xianglin, Udara Liyanage, Isuru, Lopez, Javier, Lucassen, Anneke M, Lukowski, Michael, Mann, Alice L, Marshall, John, Mattioni, Michele, Metke-Jimenez, Alejandro, Middleton, Anna, Milne, Richard J, Molnár-Gábor, Fruzsina, Mulder, Nicola, Munoz-Torres, Monica C, Nag, Rishi, Nakagawa, Hidewaki, Nasir, Jamal, Navarro, Arcadi, Nelson, Tristan H, Niewielska, Ania, Nisselle, Amy, Niu, Jeffrey, Nyrönen, Tommi H, O'Connor, Brian D, Oesterle, Sabine, Ogishima, Soichi, Wang, Vivian Ota, Paglione, Laura A D, Palumbo, Emilio, Parkinson, Helen E, Philippakis, Anthony A, Pizarro, Angel D, Prlic, Andreas, Rambla, Jordi, Rendon, Augusto, Rider, Renee A, Robinson, Peter N, Rodarmer, Kurt W, Rodriguez, Laura Lyman, Rubin, Alan F, Rueda, Manuel, Rushton, Gregory A, Ryan, Rosalyn S, Saunders, Gary I, Schuilenburg, Helen, Schwede, Torsten, Scollen, Serena, Senf, Alexander, Sheffield, Nathan C, Skantharajah, Neerjah, Smith, Albert V, Sofia, Heidi J, Spalding, Dylan, Spurdle, Amanda B, Stark, Zornitza, Stein, Lincoln D, Suematsu, Makoto, Tan, Patrick, Tedds, Jonathan A, Thomson, Alastair A, Thorogood, Adrian, Tickle, Timothy L, Tokunaga, Katsushi, Törnroos, Juha, Torrents, David, Upchurch, Sean, Valencia, Alfonso, Guimera, Roman Valls, Vamathevan, Jessica, Varma, Susheel, Vears, Danya F, Viner, Coby, Voisin, Craig, Wagner, Alex H, Wallace, Susan E, Walsh, Brian P, Williams, Marc S, Winkler, Eva C, Wold, Barbara J, Wood, Grant M, Woolley, J Patrick, Yamasaki, Chisato, Yates, Andrew D, Yung, Christina K, Zass, Lyndon J, Zaytseva, Ksenia, Zhang, Junjun, Goodhand, Peter, North, Kathryn, Birney, Ewan

وصف الملف: text

Relation: https://eprints.soton.ac.uk/458184/1/1_s2.0_S2666979X21000367_main.pdf; Rehm, Heidi L, Page, Angela J H, Smith, Lindsay, Adams, Jeremy B, Alterovitz, Gil, Babb, Lawrence J, Barkley, Maxmillian P, Baudis, Michael, Beauvais, Michael J S, Beck, Tim, Beckmann, Jacques S, Beltran, Sergi, Bernick, David, Bernier, Alexander, Bonfield, James K, Boughtwood, Tiffany F, Bourque, Guillaume, Bowers, Sarion R, Brookes, Anthony J, Brudno, Michael, Brush, Matthew H, Bujold, David, Burdett, Tony, Buske, Orion J, Cabili, Moran N, Cameron, Daniel L, Carroll, Robert J, Casas-Silva, Esmeralda, Chakravarty, Debyani, Chaudhari, Bimal P, Chen, Shu Hui, Cherry, J Michael, Chung, Justina, Cline, Melissa, Clissold, Hayley L, Cook-Deegan, Robert M, Courtot, Mélanie, Cunningham, Fiona, Cupak, Miro, Davies, Robert M, Denisko, Danielle, Doerr, Megan J, Dolman, Lena I, Dove, Edward S, Dursi, L Jonathan, Dyke, Stephanie O M, Eddy, James A, Eilbeck, Karen, Ellrott, Kyle P, Fairley, Susan, Fakhro, Khalid A, Firth, Helen V, Fitzsimons, Michael S, Fiume, Marc, Flicek, Paul, Fore, Ian M, Freeberg, Mallory A, Freimuth, Robert R, Fromont, Lauren A, Fuerth, Jonathan, Gaff, Clara L, Gan, Weiniu, Ghanaim, Elena M, Glazer, David, Green, Robert C, Griffith, Malachi, Griffith, Obi L, Grossman, Robert L, Groza, Tudor, Auvil, Jaime M Guidry, Guigó, Roderic, Gupta, Dipayan, Haendel, Melissa A, Hamosh, Ada, Hansen, David P, Hart, Reece K, Hartley, Dean Mitchell, Haussler, David, Hendricks-Sturrup, Rachele M, Ho, Calvin W L, Hobb, Ashley E, Hoffman, Michael M, Hofmann, Oliver M, Holub, Petr, Hsu, Jacob Shujui, Hubaux, Jean-Pierre, Hunt, Sarah E, Husami, Ammar, Jacobsen, Julius O, Jamuar, Saumya S, Janes, Elizabeth L, Jeanson, Francis, Jené, Aina, Johns, Amber L, Joly, Yann, Jones, Steven J M, Kanitz, Alexander, Kato, Kazuto, Keane, Thomas M, Kekesi-Lafrance, Kristina, Kelleher, Jerome, Kerry, Giselle, Khor, Seik-Soon, Knoppers, Bartha M, Konopko, Melissa A, Kosaki, Kenjiro, Kuba, Martin, Lawson, Jonathan, Leinonen, Rasko, Li, Stephanie, Lin, Michael F, Linden, Mikael, Liu, Xianglin, Udara Liyanage, Isuru, Lopez, Javier, Lucassen, Anneke M, Lukowski, Michael, Mann, Alice L, Marshall, John, Mattioni, Michele, Metke-Jimenez, Alejandro, Middleton, Anna, Milne, Richard J, Molnár-Gábor, Fruzsina, Mulder, Nicola, Munoz-Torres, Monica C, Nag, Rishi, Nakagawa, Hidewaki, Nasir, Jamal, Navarro, Arcadi, Nelson, Tristan H, Niewielska, Ania, Nisselle, Amy, Niu, Jeffrey, Nyrönen, Tommi H, O'Connor, Brian D, Oesterle, Sabine, Ogishima, Soichi, Wang, Vivian Ota, Paglione, Laura A D, Palumbo, Emilio, Parkinson, Helen E, Philippakis, Anthony A, Pizarro, Angel D, Prlic, Andreas, Rambla, Jordi, Rendon, Augusto, Rider, Renee A, Robinson, Peter N, Rodarmer, Kurt W, Rodriguez, Laura Lyman, Rubin, Alan F, Rueda, Manuel, Rushton, Gregory A, Ryan, Rosalyn S, Saunders, Gary I, Schuilenburg, Helen, Schwede, Torsten, Scollen, Serena, Senf, Alexander, Sheffield, Nathan C, Skantharajah, Neerjah, Smith, Albert V, Sofia, Heidi J, Spalding, Dylan, Spurdle, Amanda B, Stark, Zornitza, Stein, Lincoln D, Suematsu, Makoto, Tan, Patrick, Tedds, Jonathan A, Thomson, Alastair A, Thorogood, Adrian, Tickle, Timothy L, Tokunaga, Katsushi, Törnroos, Juha, Torrents, David, Upchurch, Sean, Valencia, Alfonso, Guimera, Roman Valls, Vamathevan, Jessica, Varma, Susheel, Vears, Danya F, Viner, Coby, Voisin, Craig, Wagner, Alex H, Wallace, Susan E, Walsh, Brian P, Williams, Marc S, Winkler, Eva C, Wold, Barbara J, Wood, Grant M, Woolley, J Patrick, Yamasaki, Chisato, Yates, Andrew D, Yung, Christina K, Zass, Lyndon J, Zaytseva, Ksenia, Zhang, Junjun, Goodhand, Peter, North, Kathryn and Birney, Ewan (2021) GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell genomics, 1 (2), 1 - 33, [100029]. (doi:10.1016/j.xgen.2021.100029 ).

الاتاحة: https://eprints.soton.ac.uk/458184/
https://eprints.soton.ac.uk/458184/1/1_s2.0_S2666979X21000367_main.pdf

المؤلفون: Rehm, HL, Page, AJH, Smith, L, Adams, JB, Alterovitz, G, Babb, LJ, Barkley, MP, Baudis, M, Beauvais, MJS, Beck, T, Beckmann, JS, Beltran, S, Bernick, D, Bernier, A, Bonfield, JK, Boughtwood, TF, Bourque, G, Bowers, SR, Brookes, AJ, Brudno, M, Brush, MH, Bujold, D, Burdett, T, Buske, OJ, Cabili, MN, Cameron, DL, Carroll, RJ, Casas-Silva, E, Chakravarty, D, Chaudhari, BP, Chen, SH, Cherry, JM, Chung, J, Cline, M, Clissold, HL, Cook-Deegan, RM, Courtot, M, Cunningham, F, Cupak, M, Davies, RM, Denisko, D, Doerr, MJ, Dolman, LI, Dove, ES, Dursi, LJ, Dyke, SOM, Eddy, JA, Eilbeck, K, Ellrott, KP, Fairley, S, Fakhro, KA, Firth, HV, Fitzsimons, MS, Fiume, M, Flicek, P, Fore, IM, Freeberg, MA, Freimuth, RR, Fromont, LA, Fuerth, J, Gaff, CL, Gan, W, Ghanaim, EM, Glazer, D, Green, RC, Griffith, M, Griffith, OL, Grossman, RL, Groza, T, Auvil, JMG, Guigó, R, Gupta, D, Haendel, MA, Hamosh, A, Hansen, DP, Hart, RK, Hartley, DM, Haussler, D, Hendricks-Sturrup, RM, Ho, CWL, Hobb, AE, Hoffman, MM, Hofmann, OM, Holub, P, Hsu, JS, Hubaux, J-P, Hunt, SE, Husami, A, Jacobsen, JO, Jamuar, SS, Janes, EL, Jeanson, F, Jené, A, Johns, AL, Joly, Y, Jones, SJM, Kanitz, A, Kato, K, Keane, TM, Kekesi-Lafrance, K, Kelleher, J, Kerry, G, Khor, S-S, Knoppers, BM, Konopko, MA, Kosaki, K, Kuba, M, Lawson, J, Leinonen, R, Li, S, Lin, MF, Linden, M, Liu, X, Udara Liyanage, I, Lopez, J, Lucassen, AM, Lukowski, M, Mann, AL, Marshall, J, Mattioni, M, Metke-Jimenez, A, Middleton, A, Milne, RJ, Molnár-Gábor, F, Mulder, N, Munoz-Torres, MC, Nag, R, Nakagawa, H, Nasir, J, Navarro, A, Nelson, TH, Niewielska, A, Nisselle, A, Niu, J, Nyrönen, TH, O'Connor, BD, Oesterle, S, Ogishima, S, Wang, VO, Paglione, LAD, Palumbo, E, Parkinson, HE, Philippakis, AA, Pizarro, AD, Prlic, A, Rambla, J, Rendon, A, Rider, RA, Robinson, PN, Rodarmer, KW, Rodriguez, LL, Rubin, AF, Rueda, M, Rushton, GA, Ryan, RS, Saunders, GI, Schuilenburg, H, Schwede, T, Scollen, S, Senf, A, Sheffield, NC, Skantharajah, N, Smith, AV, Sofia, HJ, Spalding, D, Spurdle, AB, Stark, Z, Stein, LD, Suematsu, M, Tan, P, Tedds, JA, Thomson, AA, Thorogood, A, Tickle, TL, Tokunaga, K, Törnroos, J, Torrents, D, Upchurch, S, Valencia, A, Guimera, RV, Vamathevan, J, Varma, S, Vears, DF, Viner, C, Voisin, C, Wagner, AH, Wallace, SE, Walsh, BP, Williams, MS, Winkler, EC, Wold, BJ, Wood, GM, Woolley, JP, Yamasaki, C, Yates, AD, Yung, CK, Zass, LJ, Zaytseva, K, Zhang, J, Goodhand, P, North, K, Birney, E

Relation: pii: 100029; Rehm, H. L., Page, A. J. H., Smith, L., Adams, J. B., Alterovitz, G., Babb, L. J., Barkley, M. P., Baudis, M., Beauvais, M. J. S., Beck, T., Beckmann, J. S., Beltran, S., Bernick, D., Bernier, A., Bonfield, J. K., Boughtwood, T. F., Bourque, G., Bowers, S. R., Brookes, A. J. ,. Birney, E. (2021). GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genom, 1 (2), pp.100029-. https://doi.org/10.1016/j.xgen.2021.100029.; http://hdl.handle.net/11343/305207

الاتاحة: http://hdl.handle.net/11343/305207

المؤلفون: Hospital, Adam, Bayarri, Genis, Soiland-Reyes, Stian, Gelpi, Jose Lluis, Andrio, Pau, Lezzi, Daniele, Butcher, Sarah, Niewielska, Ania, Westermaier, Yvonne, Badia, Rosa Maria, Vargas, Rodrigo, Bonvin, Alexandre

مصطلحات موضوعية: Workflows, Building Blocks, FAIR data, workflow managers, container technologies

Relation: https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.5281/zenodo.4540431; https://doi.org/10.5281/zenodo.4540432; oai:zenodo.org:4540432

الاتاحة: https://doi.org/10.5281/zenodo.4540432

المؤلفون: Newhouse, Steven, Wagener, Harald, González Ferrero, Montserrat, Fano-Bilbao, Oihane, Wildish, Tony, Dieckmann, Marius, Niewielska, Ania, Kapoor, Shubham, Nyrönen, Tommi

مصطلحات موضوعية: Life science research infrastructures, Integrated cloud resources, Cloud training, Sensitive data hosting, Data analysis

Relation: https://zenodo.org/communities/eosc-life; https://zenodo.org/communities/eu; https://doi.org/10.5281/zenodo.4010419; https://doi.org/10.5281/zenodo.4010420; oai:zenodo.org:4010420

الاتاحة: https://doi.org/10.5281/zenodo.4010420

المؤلفون: Niewielska, Ania, Butcher, Sarah, Westermaier, Yvonne

مصطلحات موضوعية: workflows, virtual machines, containers, jupyter notebooks, binderhub

Relation: https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.5281/zenodo.4916059; https://doi.org/10.5281/zenodo.4916060; oai:zenodo.org:4916060

الاتاحة: https://doi.org/10.5281/zenodo.4916060

المؤلفون: Brian O'Connor, James Eddy, David Steinberg, David Glazer, Patrick Magee, Susheel Varma, Venkat Malladi, Peter Amstutz, rishidev, Alex Kanitz, Jeff Gentry, Abraham, Denis Yuen, W. Lee Pang, PhD, Angel Pizarro, Ania Niewielska, Junjun Zhang, Kyle Ellrott, Michael R. Crusoe, Ruchi

Relation: https://github.com/ga4gh/workflow-execution-service-schemas/tree/1.1.0; https://doi.org/10.5281/zenodo.1491841; https://doi.org/10.5281/zenodo.8345841; oai:zenodo.org:8345841

الاتاحة: https://doi.org/10.5281/zenodo.8345841

المؤلفون: Adam Hospital, Stian Soiland-Reyes, Josep Lluís Gelpí, Pau Andrio, Daniele Lezzi, Sarah Butcher, Ania Niewielska, Yvonne Westermaier

المساهمون: Mark Abraham, Alexander Bonvin, Adam Hospital, Stian Soiland-Reyes

مصطلحات موضوعية: Tools, Workflows, Workflow managers, Hardware infrastructures, Container technologies

Relation: https://doi.org/10.5281/zenodo.4540432; https://doi.org/10.1007/s10723-017-9425-z; https://doi.org/10.1016/j.drudis.2018.01.039; https://doi.org/10.1038/s41573-019-0024-5; https://doi.org/10.1093/bioinformatics/btx192; https://doi.org/10.1016/j.cpc.2018.05.021; https://doi.org/10.1371/journal.pone.0177459; https://arxiv.org/abs/arXiv:1905.11863; https://doi.org/10.6084/m9.figshare.3115156.v2; https://arxiv.org/abs/arXiv:1904.03085; https://doi.org/10.1145/3307681.3325400; https://doi.org/10.1093/bioinformatics/bty484; https://doi.org/10.1002/cpe.3505; https://doi.org/10.1371/journal.pcbi.1006649; https://doi.org/10.1186/1758-2946-3-33; https://doi.org/10.1186/1756-0500-5-367; https://doi.org/10.1002/prot.1159; https://www.usenix.org/system/files/conference/osdi16/osdi16-abadi.pdf; https://www.jmlr.org/papers/v12/pedregosa11a.html; https://doi.org/10.1002/jcc.23804; https://doi.org/10.1016/j.cpc.2009.05.011; https://doi.org/10.1093/bioinformatics/btl461; https://doi.org/10.1002/jcc.21787; https://doi.org/10.12688/f1000research.17456.1; https://doi.org/10.1093/bioinformatics/btp163; https://doi.org/10.1006/jmbi.1993.1626; https://doi.org/10.5281/zenodo.263963; https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.5281/zenodo.4604606; https://doi.org/10.5281/zenodo.4604607; oai:zenodo.org:4604607

الاتاحة: https://doi.org/10.5281/zenodo.4604607

المؤلفون: Adam Hospital, Genís Bayarri, Stian Soiland- Reyes, Josep Lluís Gelpí, Pau Andrio, Daniele Lezzi, Sarah Butcher, Ania Niewielska, Yvonne Westermaier, Rosa Maria Badia

مصطلحات موضوعية: Building Blocks, Interoperability, FAIR, Tools, Workflows, Workflow managers, Hardware infrastructures, Container technologies

Relation: https://doi.org/10.5281/zenodo.4604607; https://doi.org/10.1038/sdata.2016.18; https://doi.org/10.12688/f1000research.11407.1; https://doi.org/10.3233/DS-190026; https://doi.org/10.1177/1094342015594678; https://doi.org/10.1093/nar/gkx313; https://doi.org/10.6084/m9.figshare.3115156.v2; https://doi.org/10.1038/s41597-019-0177-4; https://doi.org/10.1038/nbt.3772; https://doi.org/10.5281/zenodo.3236256; https://doi.org/10.1186/1758-2946-3-33; https://doi.org/10.1186/1756-0500-5-367; https://doi.org/10.1002/jcc.20035; https://ambermd.org/doc12/Amber16.pdf; https://doi.org/10.1107/S2059798319004522; https://doi.org/10.1002/jcc.23804; https://doi.org/10.1021/ct400341p; https://doi.org/10.1002/(SICI)1521-3773(19990115)38:1/23.0.CO;2-M; https://doi.org/10.1093/bioinformatics/btl461; https://doi.org/10.1093/nar/gkz853; https://zenodo.org/communities/eu; https://zenodo.org/communities/bioexcel; https://doi.org/10.5281/zenodo.4605206; https://doi.org/10.5281/zenodo.4605207; oai:zenodo.org:4605207

الاتاحة: https://doi.org/10.5281/zenodo.4605207

المؤلفون: Niewielska, Milena

المصدر: Eunomia – Rozwój Zrównoważony – Sustainable Development; 2021, 2(101); 157-164 ; 1897-2349 ; 2657-5760

مصطلحات موضوعية: envir

Relation: https://bibliotekanauki.pl/articles/2082769.pdf; https://bibliotekanauki.pl/articles/2082769

الاتاحة: https://bibliotekanauki.pl/articles/2082769.pdf
https://bibliotekanauki.pl/articles/2082769

المؤلفون: Barcelona Supercomputing Center, Soiland Reyes, Stian, Bayarri, Genís, Andrio, Pau, Long, Robin, Lowe, Douglas, Niewielska, Ania, Hospital, Adam, Groth, Paul

مصطلحات الفهرس: Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Workflow management systems, Bioinformatics, Computational tools, Workflow languages, Execution platforms, Reproducibility, Research software, Programari, Simulació per ordinador, Article

URL: http://hdl.handle.net/2117/364027
https://direct.mit.edu/dint/article/doi/10.1162/dint_a_00135/109838/Making-Canonical-Workflow-Building-Blocks
https://direct.mit.edu/dint/article/doi/10.1162/dint_a_00135/109838/Making-Canonical-Workflow-Building-Blocks
info:eu-repo/grantAgreement/EC/H2020/823830/EU/BioExcel Centre of Excellence for ComputationalBiomolecular Research/BioExcel-2
info:eu-repo/grantAgreement/EC/H2020/675728/EU/Centre of Excellence for Biomolecular Research/BioExcel
info:eu-repo/grantAgreement/EC/H2020/871075/EU/Connect and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services/ELIXIR-CONVERGE