المؤلفون: Joan Hérisson, Thomas Duigou, Melchior du Lac, Kenza Bazi-Kabbaj, Mahnaz Sabeti Azad, Gizem Buldum, Olivier Telle, Yorgo El Moubayed, Pablo Carbonell, Neil Swainston, Valentin Zulkower, Manish Kushwaha, Geoff S. Baldwin, Jean-Loup Faulon

المصدر: Nature Communications, Vol 13, Iss 1, Pp 1-12 (2022)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/259f20f7ae934c51a814e6d509a6ea80

المؤلفون: Yash Khemchandani, Stephen O’Hagan, Soumitra Samanta, Neil Swainston, Timothy J. Roberts, Danushka Bollegala, Douglas B. Kell

المصدر: Journal of Cheminformatics, Vol 12, Iss 1, Pp 1-17 (2020)

مصطلحات موضوعية: Cheminformatics, Deep learning, Generative methods, QSAR, Reinforcement learning, Information technology, T58.5-58.64, Chemistry, QD1-999

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s13321-020-00454-3; https://doaj.org/toc/1758-2946

URL الوصول: https://doaj.org/article/2f1ad5496fe14e808d0dd23592b59458

المؤلفون: Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomáš Helikar, Stefan Hoops, Rahuman S Malik‐Sheriff, Stuart L Moodie, Ion I Moraru, Chris J Myers, Aurélien Naldi, Brett G Olivier, Sven Sahle, James C Schaff, Lucian P Smith, Maciej J Swat, Denis Thieffry, Leandro Watanabe, Darren J Wilkinson, Michael L Blinov, Kimberly Begley, James R Faeder, Harold F Gómez, Thomas M Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L Lister, Daniel Lucio, Eric Mjolsness, Carole J Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A Shaffer, Bruce E Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier‐Schellersheim, Herbert M Sauro, Bernhard Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C Doyle, Michael Hucka, SBML Level 3 Community members, Richard R Adams, Nicholas A Allen, Bastian R Angermann, Marco Antoniotti, Gary D Bader, Jan Červený, Mélanie Courtot, Chris D Cox, Piero Dalle Pezze, Emek Demir, William S Denney, Harish Dharuri, Julien Dorier, Dirk Drasdo, Ali Ebrahim, Johannes Eichner, Johan Elf, Lukas Endler, Chris T Evelo, Christoph Flamm, Ronan MT Fleming, Martina Fröhlich, Mihai Glont, Emanuel Gonçalves, Martin Golebiewski, Hovakim Grabski, Alex Gutteridge, Damon Hachmeister, Leonard A Harris, Benjamin D Heavner, Ron Henkel, William S Hlavacek, Bin Hu, Daniel R Hyduke, Hidde de Jong, Nick Juty, Peter D Karp, Jonathan R Karr, Douglas B Kell, Roland Keller, Ilya Kiselev, Steffen Klamt, Edda Klipp, Christian Knüpfer, Fedor Kolpakov, Falko Krause, Martina Kutmon, Camille Laibe, Conor Lawless, Lu Li, Leslie M Loew, Rainer Machne, Yukiko Matsuoka, Pedro Mendes, Huaiyu Mi, Florian Mittag, Pedro T Monteiro, Kedar Nath Natarajan, Poul MF Nielsen, Tramy Nguyen, Alida Palmisano, Jean‐Baptiste Pettit, Thomas Pfau, Robert D Phair, Tomas Radivoyevitch, Johann M Rohwer, Oliver A Ruebenacker, Julio Saez‐Rodriguez, Martin Scharm, Henning Schmidt, Falk Schreiber, Michael Schubert, Roman Schulte, Stuart C Sealfon, Kieran Smallbone, Sylvain Soliman, Melanie I Stefan, Devin P Sullivan, Koichi Takahashi, Bas Teusink, David Tolnay, Ibrahim Vazirabad, Axel von Kamp, Ulrike Wittig, Clemens Wrzodek, Finja Wrzodek, Ioannis Xenarios, Anna Zhukova, Jeremy Zucker

المصدر: Molecular Systems Biology, Vol 16, Iss 8, Pp 1-21 (2020)

مصطلحات موضوعية: computational modeling, file format, interoperability, reproducibility, systems biology, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/86e517962df24b21af078b7f951f7487

المؤلفون: Aditya Divyakant Shrivastava, Neil Swainston, Soumitra Samanta, Ivayla Roberts, Marina Wright Muelas, Douglas B. Kell

المصدر: Biomolecules, Vol 11, Iss 12, p 1793 (2021)

مصطلحات موضوعية: deep learning, electrospray, mass spectrometry, metabolomics, artificial intelligence, generative methods, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2218-273X/11/12/1793; https://doaj.org/toc/2218-273X

URL الوصول: https://doaj.org/article/dea105313cff4afcacc9156850d2b54e

المؤلفون: Soumitra Samanta, Steve O’Hagan, Neil Swainston, Timothy J. Roberts, Douglas B. Kell

المصدر: Molecules, Vol 25, Iss 15, p 3446 (2020)

مصطلحات موضوعية: cheminformatics, molecular similarity, deep learning, variational autoencoder, SMILES, Organic chemistry, QD241-441

وصف الملف: electronic resource

Relation: https://www.mdpi.com/1420-3049/25/15/3446; https://doaj.org/toc/1420-3049

URL الوصول: https://doaj.org/article/33a34aef2cf14790ae04a2a153b8faf1

المؤلفون: Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell

المصدر: PeerJ Computer Science, Vol 3, p e120 (2017)

مصطلحات موضوعية: Directed evolution, Codon, Protein engineering, Industrial biotechnology, Mutagenesis, Enzyme engineering, Electronic computers. Computer science, QA75.5-76.95

وصف الملف: electronic resource

Relation: https://peerj.com/articles/cs-120.pdf; https://peerj.com/articles/cs-120/; https://doaj.org/toc/2376-5992

URL الوصول: https://doaj.org/article/3f96b511f2b24658acc379ae710a1ca8

المؤلفون: Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings, Jean-Karim Hériché, Henning Hermjakob, Jon C Ison, Rafael C Jimenez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, Maria Jesus Martin, Johanna R McEntyre, Chris Morris, Juha Muilu, Wolfgang Müller, Philippe Rocca-Serra, Susanna-Assunta Sansone, Murat Sariyar, Jacky L Snoep, Stian Soiland-Reyes, Natalie J Stanford, Neil Swainston, Nicole Washington, Alan R Williams, Sarala M Wimalaratne, Lilly M Winfree, Katherine Wolstencroft, Carole Goble, Christopher J Mungall, Melissa A Haendel, Helen Parkinson

المصدر: PLoS Biology, Vol 15, Iss 6, p e2001414 (2017)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

URL الوصول: https://doaj.org/article/2740a680c7c54ad590ec4fc17b1e468c

المؤلفون: Neil Swainston, Riza Batista-Navarro, Pablo Carbonell, Paul D Dobson, Mark Dunstan, Adrian J Jervis, Maria Vinaixa, Alan R Williams, Sophia Ananiadou, Jean-Loup Faulon, Pedro Mendes, Douglas B Kell, Nigel S Scrutton, Rainer Breitling

المصدر: PLoS ONE, Vol 12, Iss 7, p e0179130 (2017)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/ce135720eff6478e9e5ad7cd843981b6

المؤلفون: Jacqueline Y Quinn, Robert Sidney Cox, Aaron Adler, Jacob Beal, Swapnil Bhatia, Yizhi Cai, Joanna Chen, Kevin Clancy, Michal Galdzicki, Nathan J Hillson, Nicolas Le Novère, Akshay J Maheshwari, James Alastair McLaughlin, Chris J Myers, Umesh P, Matthew Pocock, Cesar Rodriguez, Larisa Soldatova, Guy-Bart V Stan, Neil Swainston, Anil Wipat, Herbert M Sauro

المصدر: PLoS Biology, Vol 13, Iss 12, p e1002310 (2015)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

URL الوصول: https://doaj.org/article/cfdd6763e5654facb2bcb9ec4f285367

المؤلفون: Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E. Lagerman, Andreas S. Bommarius, Amalie Vang Høst, John M. Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T. Bergmann, Johann M. Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, Jürgen Pleiss

المصدر: Nature Methods. 20:400-402

مصطلحات موضوعية: Cell Biology, Molecular Biology, Biochemistry, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::b17f63368f0081d1d7dd31c90a29b779
https://doi.org/10.1038/s41592-022-01763-1

المؤلفون: Jan Range, Frank Bergmann, Johann Rohwer, benjaminhadzovic, Neil Swainston, AnnaReisch, Hannah Dienhart, Juergen Pleiss, SL-2204, Max Häußler

Relation: https://github.com/EnzymeML/PyEnzyme/tree/v1.1.5; https://doi.org/10.5281/zenodo.5021262; https://doi.org/10.5281/zenodo.10156616; oai:zenodo.org:10156616

الاتاحة: https://doi.org/10.5281/zenodo.10156616

المؤلفون: Joanna C, Sadler, Neil, Swainston, Mark S, Dunstan, Andrew, Currin, Douglas B, Kell

المصدر: Methods in molecular biology (Clifton, N.J.). 2461

مصطلحات موضوعية: Proteins, Directed Molecular Evolution, Gene Library

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::4f7317bd2ee04563d65bfe0d4988268e
https://pubmed.ncbi.nlm.nih.gov/35727444

المؤلفون: Neil Swainston, Soumitra Samanta, Douglas B. Kell

المصدر: Kell, D B, Samanta, S & Swainston, N 2020, ' Deep learning and generative methods in cheminformatics and chemical biology: navigating small molecule space intelligently ', Biochemical Journal, vol. 477, no. 23, pp. 4559-4580 . https://doi.org/10.1042/BCJ20200781
Biochemical Journal

مصطلحات موضوعية: Artificial intelligence, Bioinformatics, Computer science, Space (commercial competition), 010402 general chemistry, 01 natural sciences, Biochemistry, 03 medical and health sciences, Deep Learning, Discriminative model, Computer Simulation, Representation (mathematics), Review Articles, Molecular Biology, 030304 developmental biology, 0303 health sciences, Artificial neural network, business.industry, Cheminformatics, Deep learning, Cell Biology, artificial intelligence, Chemical space, 0104 chemical sciences, Variety (cybernetics), business

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7cb490f32cd9e995fb66dec4d3121d28
https://doi.org/10.1042/bcj20200781

المؤلفون: Joan Hérisson, Thomas Duigou, Melchior du Lac, Kenza Bazi-Kabbaj, Mahnaz Sabeti Azad, Gizem Buldum, Olivier Telle, Yorgo El-Moubayed, Pablo Carbonell, Neil Swainston, Valentin Zulkower, Manish Kushwaha, Geoff S. Baldwin, Jean-Loup Faulon

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::ce2759070cb973e5ce39569182b4c0ee
https://doi.org/10.1101/2022.02.23.481618

المؤلفون: Joanna C. Sadler, Neil Swainston, Mark S. Dunstan, Andrew Currin, Douglas B. Kell

المصدر: Methods in Molecular Biology ISBN: 9781071621516

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::7621a602a43d8d5592dea6e27fd3ff6d
https://doi.org/10.1007/978-1-0716-2152-3_5

المؤلفون: Jan Range, Frank Bergmann, Johann Rohwer, benjaminhadzovic, Neil Swainston, AnnaReisch, Hannah Dienhart, SL-2204

Relation: https://github.com/EnzymeML/PyEnzyme/tree/v1.1.4; https://doi.org/10.5281/zenodo.5021262; https://doi.org/10.5281/zenodo.6783921; oai:zenodo.org:6783921

الاتاحة: https://doi.org/10.5281/zenodo.6783921

المؤلفون: Carsten Kettner, Jürgen Pleiss, Andreas Weidemann, Jens Lohmann, Frank Bergmann, Santiago Schnell, Colin Halupczok, Neil Swainston, Ulrike Wittig, Jan Range

المصدر: The FEBS journalReferences. 289(19)

مصطلحات موضوعية: Markup language, Application programming interface, Databases, Factual, business.industry, computer.internet_protocol, Computer science, Cell Biology, Python (programming language), Biochemistry, Data flow diagram, Data exchange, Container (abstract data type), Biocatalysis, SBML, Software engineering, business, computer, Molecular Biology, XML, Software, computer.programming_language

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3cde403f283da048d3eec36dc7a53eb9
https://pubmed.ncbi.nlm.nih.gov/34890097

المؤلفون: Marina Wright Muelas, Neil Swainston, Aditya Divyakant Shrivastava, Douglas B. Kell, Soumitra Samanta, Ivayla Roberts

المصدر: Biomolecules
Biomolecules, Vol 11, Iss 1793, p 1793 (2021)
Biomolecules; Volume 11; Issue 12; Pages: 1793
Shrivastava, A D, Swainston, N, Samanta, S, Roberts, I, Wright Muelas, M & Kell, D 2021, ' MassGenie: A Transformer-Based Deep Learning Method for Identifying Small Molecules from Their Mass Spectra ', Biomolecules, vol. 11, no. 12, 1793 . https://doi.org/10.3390/biom11121793

مصطلحات موضوعية: Artificial intelligence, biology_other, Mass spectrometry, Biochemistry, Microbiology, Article, Mass Spectrometry, Small Molecule Libraries, Transformers, deep learning, electrospray, mass spectrometry, metabolomics, artificial intelligence, generative methods, chemical space, transformers, Metabolomics, Molecule, Statistical physics, Language translation, Chemical space, Molecular Biology, Physics, Molecular mass, Molecular Structure, Deep learning, Electrospray, Small molecule, QR1-502, Mass spectrum, Algorithms, Generative methods, Mass spectral interpretation

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ca81292ffd0681d052c7b7ccfc8c02b
http://europepmc.org/articles/PMC8699281

المؤلفون: Dagmar Waltemath, Neil Swainston, Allyson L. Lister, Frank Bergmann, Ron Henkel, Stefan Hoops, Michael Hucka, Nick Juty, Sarah Keating, Christian Knuepfer, Falko Krause, Camille Laibe, Wolfram Liebermeister, Catherine Lloyd, Goksel Misirli, Marvin Schulz, Morgan Taschuk, Nicolas Le Novère

المصدر: Nature Precedings

مصطلحات موضوعية: Bioinformatics, Data Standards

Relation: http://precedings.nature.com/documents/5610/version/1; oai:nature.com:10.1038/npre.2011.5610.1; http://dx.doi.org/10.1038/npre.2011.5610.1

الاتاحة: http://precedings.nature.com/documents/5610/version/1
https://doi.org/10.1038/npre.2011.5610.1

المؤلفون: William Rowe, Kirk J. Malone, Nigel S. Scrutton, Jason Micklefield, Perdita E. Barran, Rainer Breitling, Adrian J. Jervis, Katherine A. Hollywood, Reynard Spiess, Philip Shapira, Sandra Taylor, Eriko Takano, Pablo Carbonell, Christopher J. Robinson, Andrew Currin, Nicholas J. Turner, Steven Parker, Neil Swainston, Rosalind Le Feuvre, Nicholas E. Matthews, Mark S. Dunstan, Paul Mulherin, Cunyu Yan

المصدر: Metabolic Engineering
Robinson, C, Carbonell, P, Jervis, A, Yan, C, Hollywood, K, Currin, A, Swainston, N, Speiss, R, Taylor, S, Mulherin, P, Parker, S, Rowe, W, Matthews, N, Malone, K, Le Feuvre, R, Shapira, P, Barran, P, Turner, N, Micklefield, J, Breitling, R, Takano, E & Scrutton, N 2020, ' Rapid prototyping of microbial production strains for the biomanufacture of potential material monomers ', Metabolic Engineering . https://doi.org/10.1016/j.ymben.2020.04.008

مصطلحات موضوعية: 0106 biological sciences, Rapid prototyping, Biofoundry, biomanufacturing, Computer science, Bioengineering, Industrial biotechnology, 01 natural sciences, Applied Microbiology and Biotechnology, Article, Mandelic acid, 03 medical and health sciences, Synthetic biology, Industrial Microbiology, mandelic acid, Manchester Institute of Biotechnology, 010608 biotechnology, Production (economics), Hydroxymandelic acid, Biomanufacturing, Computer Simulation, biofoundry, 030304 developmental biology, 0303 health sciences, Bacteria, business.industry, hydroxymandelic acid, Stereoisomerism, Chemical industry, ResearchInstitutes_Networks_Beacons/manchester_institute_of_biotechnology, Pipeline (software), Biosynthetic Pathways, Benchmarking, Metabolic Engineering, Chemical Industry, Fermentation, Mandelic Acids, Cleaner production, synthetic biology, industrial biotechnology, Biochemical engineering, business, Biotechnology, Renewable resource

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5fb2bb76545a1cee3c07d3fd5e981a13
http://europepmc.org/articles/PMC7225752