المؤلفون: Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun S. Seetharam, Joshua C. Stein, Victor Llaca, Nancy Manchanda, Amanda M. Gilbert, Sharon Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha J. Snodgrass, Kevin Fengler, Margaret Woodhouse, Brian P. Walenz, Sergey Koren, Adam M. Phillippy, Brett T. Hannigan, R. Kelly Dawe, Candice N. Hirsch, Matthew B. Hufford, Doreen Ware

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452

المؤلفون: Jianing Liu, Arun S. Seetharam, Kapeel Chougule, Shujun Ou, Kyle W. Swentowsky, Jonathan I. Gent, Victor Llaca, Margaret R. Woodhouse, Nancy Manchanda, Gernot G. Presting, David A. Kudrna, Magdy Alabady, Candice N. Hirsch, Kevin A. Fengler, Doreen Ware, Todd P. Michael, Matthew B. Hufford, R. Kelly Dawe

المصدر: Genome Biology, Vol 21, Iss 1, Pp 1-17 (2020)

مصطلحات موضوعية: Gapless assembly, Maize genome, Knob structure, Meiotic drive, Long-read technology, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-020-02029-9; https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/a5e8887863d14b13bef268c7f7f78319

المؤلفون: Nancy Manchanda, John L. Portwood, Margaret R. Woodhouse, Arun S. Seetharam, Carolyn J. Lawrence-Dill, Carson M. Andorf, Matthew B. Hufford

المصدر: BMC Genomics, Vol 21, Iss 1, Pp 1-9 (2020)

مصطلحات موضوعية: Shiny, Genome assembly, Gene annotations, Web interface, Docker containers, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-020-6568-2; https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/9e4eabcbbc544226a9dbe9f4e67ba9b1

المؤلفون: Shujun Ou, Tyler Collins, Yinjie Qiu, Arun S. Seetharam, Claire C. Menard, Nancy Manchanda, Jonathan I. Gent, Michael C. Schatz, Sarah N. Anderson, Matthew B. Hufford, Candice N. Hirsch

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::adb4583dfcec06d8e487342905196c45
https://doi.org/10.1101/2022.10.09.511471

المؤلفون: R. Kelly Dawe, Jianing Liu, Kapeel Chougule, Adam M. Phillippy, Chen-Shan Chin, Sharon Wei, Brian P. Walenz, Sergey Koren, Samantha J. Snodgrass, Brett T. Hannigan, Joshua C. Stein, Arkarachai Fungtammasan, Nancy Manchanda, Arun S. Seetharam, Margaret R. Woodhouse, Kevin Fengler, Sarah Pedersen, Candice N. Hirsch, Shujun Ou, Matthew B. Hufford, Doreen Ware, Victor Llaca, Amanda M. Gilbert, David E. Hufnagel

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Nature Communications

مصطلحات موضوعية: 0301 basic medicine, 0106 biological sciences, Transposable element, Agricultural genetics, Computer science, Heterochromatin, Science, General Physics and Astronomy, Sequence assembly, Computational biology, Biology, 01 natural sciences, Genome, Zea mays, General Biochemistry, Genetics and Molecular Biology, Article, 03 medical and health sciences, Centromere, Genome assembly algorithms, Resource allocation (computer), Inbreeding, lcsh:Science, Gene, 030304 developmental biology, Sequence (medicine), Repetitive Sequences, Nucleic Acid, 2. Zero hunger, 0303 health sciences, Multidisciplinary, Base Sequence, High-Throughput Nucleotide Sequencing, General Chemistry, 030104 developmental biology, DNA Transposable Elements, lcsh:Q, Line (text file), Limited resources, Genome, Plant, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e80e0dbb5b920674479f8508b45c205a
https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452

المؤلفون: Nancy Manchanda, James M. Reecy, Timothy P. L. Smith, Haibo Liu, Hamid Beiki, Jianzhen Huang, Dan J. Nonneman, Christopher K. Tuggle

المصدر: BMC Genomics, Vol 20, Iss 1, Pp 1-19 (2019)
BMC Genomics

مصطلحات موضوعية: 0106 biological sciences, Chromatin Immunoprecipitation, lcsh:QH426-470, Porcine, lcsh:Biotechnology, Sus scrofa, RNA-Seq, Computational biology, Biology, 01 natural sciences, Genome, 03 medical and health sciences, lcsh:TP248.13-248.65, Genetics, Animals, Transcriptome sequencing, Gene, 030304 developmental biology, PacBio, 0303 health sciences, Iso-seq, RNA, Computational Biology, High-Throughput Nucleotide Sequencing, Molecular Sequence Annotation, Genome project, Single molecule long read sequencing, Cap analysis gene expression, Alternative Splicing, lcsh:Genetics, Human genome, DNA microarray, RNA-seq, 010606 plant biology & botany, Biotechnology, Research Article, Genome annotation

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::efd441fd1259ca92c952403bf67eeb75
http://link.springer.com/article/10.1186/s12864-019-5709-y

المؤلفون: Qiuhan Jiang, David E. Hufnagel, Rebecca D. Piri, Jianming Yu, John L. Portwood, Carson M. Andorf, Shujun Ou, Matthew B. Hufford, Doreen Ware, Margaret R. Woodhouse, Xianran Li, Jonathan I. Gent, William A. Ricci, Erin Baggs, Dong Won Kim, Na Wang, Samantha J. Snodgrass, Silas Tittes, Tingting Guo, Sharon Wei, Andrew Olson, Ethalinda K. S. Cannon, Amanda M. Gilbert, Kevin Fengler, Michael Syring, Arun S. Seetharam, Rafael Della Coletta, Zhenyuan Lu, David Kudrna, Victor Llaca, R. Kelly Dawe, Ksenia V. Krasileva, Jeffrey Ross-Ibarra, Robert J. Schmitz, Nancy Manchanda, Yinjie Qiu, Alexandre P. Marand, Bo Wang, Sarah Pedersen, Kapeel Chougule, Marcela K. Tello-Ruiz, Christine H. O’Connor, Yibing Zeng, Candice N. Hirsch, Asher I. Hudson, Jianing Liu

مصطلحات موضوعية: 2. Zero hunger, 0106 biological sciences, 0303 health sciences, education.field_of_study, Population, Sequence assembly, Computational biology, Quantitative trait locus, Biology, 01 natural sciences, Genome, Structural variation, 03 medical and health sciences, DNA methylation, Nested association mapping, education, Gene, 030304 developmental biology, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::287c0cd01f5b31ad42560fae912e63a8
https://doi.org/10.1101/2021.01.14.426684

المؤلفون: Xianran Li, Marcela K. Tello-Ruiz, Doreen Ware, Qiuhan Jiang, Robert J. Schmitz, Margaret R. Woodhouse, Carson M. Andorf, Dong Won Kim, Zhenyuan Lu, R. Kelly Dawe, Ethalinda K. S. Cannon, Arun S. Seetharam, Kevin Fengler, Ksenia V. Krasileva, David Kudrna, Amanda M. Gilbert, Jeffrey Ross-Ibarra, Rebecca D. Piri, Alexandre P. Marand, Yinjie Qiu, Nancy Manchanda, Christine H. O’Connor, Jonathan I. Gent, Silas Tittes, Michael Syring, Sharon Wei, Rafael Della Coletta, Candice N. Hirsch, Shujun Ou, Matthew B. Hufford, Jianing Liu, Na Wang, David E. Hufnagel, Samantha J. Snodgrass, Erin Baggs, Kapeel Chougule, Tingting Guo, Jianming Yu, Andrew Olson, John L. Portwood, Bo Wang, Sarah Pedersen, Yibing Zeng, Asher I. Hudson, William A. Ricci, Victor Llaca

المصدر: Science
Science (New York, N.Y.), vol 373, iss 6555

مصطلحات موضوعية: 0106 biological sciences, Multifactorial Inheritance, Genotype, General Science & Technology, Population, Centromere, Sequence assembly, Computational biology, Biology, Regulatory Sequences, Nucleic Acid, Genes, Plant, 01 natural sciences, Genome, Polymorphism, Single Nucleotide, Zea mays, Chromosomes, Plant, Article, Structural variation, 03 medical and health sciences, Genetic variation, Nested association mapping, education, 030304 developmental biology, Disease Resistance, Plant Diseases, 2. Zero hunger, Comparative genomics, 0303 health sciences, education.field_of_study, Multidisciplinary, Whole Genome Sequencing, Chromosome Mapping, Genetic Variation, High-Throughput Nucleotide Sequencing, Molecular Sequence Annotation, Genome project, Sequence Analysis, DNA, DNA Methylation, Tetraploidy, Phenotype, Transcriptome, Genome, Plant, 010606 plant biology & botany

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::049e6d62319fe8a3b4a9a5eaa6db695c
https://pubmed.ncbi.nlm.nih.gov/34353948

المؤلفون: Arun Seetharam, Yinjie Qiu, margaretwoodhouse, Nancy Manchanda, Shujun Ou, jl03308, Samantha Snodgrass, Rafael Della Coletta, MissElena09, Kapeel, aihudson, Silas Tittes

Relation: https://github.com/HuffordLab/NAM-genomes/tree/v0.2; https://doi.org/10.5281/zenodo.4781589; https://doi.org/10.5281/zenodo.4976632; oai:zenodo.org:4976632

الاتاحة: https://doi.org/10.5281/zenodo.4976632

المؤلفون: Matthew B. Hufford, Arun S. Seetharam, Margaret R. Woodhouse, Kapeel M. Chougule, Shujun Ou, Jianing Liu, William A. Ricci, Tingting Guo, Andrew Olson, Yinjie Qiu, Rafael Della Coletta, Silas Tittes, Asher I. Hudson, Alexandre P. Marand, Sharon Wei, Zhenyuan Lu, Bo Wang, Marcela K. Tello-Ruiz, Rebecca D. Piri, Na Wang, Dong won Kim, Yibing Zeng, Christine H. O'Connor, Xianran Li, Amanda M. Gilbert, Erin Baggs, Ksenia V. Krasileva, John L. Portwood II, Ethalinda K.S. Cannon, Carson M. Andorf, Nancy Manchanda, Samantha J. Snodgrass, David E. Hufnagel, Qiuhan Jiang, Sarah Pedersen, Michael L. Syring, David A. Kudrna, Victor Llaca, Kevin Fengler, Robert J. Schmitz, Jeffrey Ross-Ibarra, Jianming Yu, Jonathan I. Gent, Candice N. Hirsch, Doreen Ware, R. Kelly Dawe

مصطلحات موضوعية: bioinformatics, maize, genome assembly, gene prediction

Relation: https://github.com/HuffordLab/NAM-genomes/tree/v0.1; https://doi.org/10.5281/zenodo.4781589; https://doi.org/10.5281/zenodo.4781590; oai:zenodo.org:4781590

الاتاحة: https://doi.org/10.5281/zenodo.4781590

المؤلفون: Victor Llaca, Arun S. Seetharam, Margaret R. Woodhouse, Kyle W. Swentowsky, Todd P. Michael, Kevin Fengler, Magdy S. Alabady, Candice N. Hirsch, Kapeel Chougule, David Kudrna, Nancy Manchanda, Jonathan I. Gent, Doreen Ware, R. Kelly Dawe, Shujun Ou, Matthew B. Hufford, Gernot G. Presting, Jianing Liu

مصطلحات موضوعية: Meiotic drive, Contig, Chromosome 3, Heterochromatin, Centromere, Genomics, Chromosome 9, Computational biology, Biology, Genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbbeee2a8c6ea3adf7428d3df7c20b60

المؤلفون: William Chow, Christopher K. Tuggle, Nancy Manchanda, David A. Hume, Bronwen Aken, Mick Watson, Gary A. Rohrer, Adam M. Phillippy, Laurie A. Rund, Dan J. Nonneman, Sergey Koren, Heather Finlayson, Elizabeth Tseng, Darren K. Griffin, Gregory Hannum, Rebecca E. O’Connor, Steven G. Schroeder, Amanda Warr, Lel Eory, Haibo Liu, Richard Hall, Thibaut Hourlier, Richard Talbot, Kristi Kim, Paul Flicek, Fergal J. Martin, Carole A. Sargent, Kerstin Howe, Alan Archibald, Timothy P L Smith, Nabeel A. Affara, Osagie G. Izuogu, Carlos García Girón, Ariel S. Schwartz, Benjamin M. Skinner, Benjamin D. Rosen, Konstantinos Billis, Derek M. Bickhart, Hamid Beiki, Lawrence B. Schook

المساهمون: Sargent, Carole [0000-0002-4205-3085], Apollo - University of Cambridge Repository

المصدر: GigaScience
Warr, A, Affara, N, Aken, B, Beiki, H, Bickhart, D M, Billis, K, Chow, W, Eory, L, Finlayson, H A, Flicek, P, Girón, C G, Griffin, D K, Hall, R, Hannum, G, Hourlier, T, Howe, K, Hume, D A, Izuogu, O, Kim, K, Koren, S, Liu, H, Manchanda, N, Martin, F J, Nonneman, D J, O'Connor, R E, Phillippy, A M, Rohrer, G A, Rosen, B D, Rund, L A, Sargent, C A, Schook, L B, Schroeder, S G, Schwartz, A S, Skinner, B M, Talbot, R, Tseng, E, Tuggle, C K, Watson, M, Smith, T P L & Archibald, A L 2020, ' An improved pig reference genome sequence to enable pig genetics and genomics research ', GigaScience, vol. 9, no. 6, pp. 1-14 . https://doi.org/10.1093/gigascience/giaa051

مصطلحات موضوعية: pig, reference assembly, genome annotation, Swine, AcademicSubjects/SCI02254, Sus scrofa, Health Informatics, Shotgun, Genomics, Computational biology, Biology, Genome, Annotation, 03 medical and health sciences, Animals, Gene, 030304 developmental biology, 2. Zero hunger, 0303 health sciences, Shotgun sequencing, Research, 030302 biochemistry & molecular biology, 0402 animal and dairy science, Computational Biology, Reproducibility of Results, Molecular Sequence Annotation, 04 agricultural and veterinary sciences, Genome project, Sequence Analysis, DNA, 040201 dairy & animal science, Breed, pig genomes, Computer Science Applications, Domestic pig, AcademicSubjects/SCI00960, Purebred, Reference genome

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2e1b529c26e78702b598b57fa44a4ad0
https://pubmed.ncbi.nlm.nih.gov/32543654

المؤلفون: Jeffrey Ross-Ibarra, Nancy Manchanda, Matthew B. Hufford, Samantha J. Snodgrass

المصدر: Compendium of Plant Genomes ISBN: 9783319974262

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Genomic research, food and beverages, Genomics, Biology, Quantitative trait locus, 010603 evolutionary biology, 01 natural sciences, Genome, Gene flow, 03 medical and health sciences, 030104 developmental biology, Evolutionary biology, Adaptation, Domestication, Organism

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::e093f47540efe76835e2f22ec126e4dd
https://doi.org/10.1007/978-3-319-97427-9_19