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المؤلفون: Maria Kjaergaard, Katrine Prier Lindvig, Katrine Holtz Thorhauge, Peter Andersen, Johanne Kragh Hansen, Nanna Kastrup, Jane Møller Jensen, Camilla Dalby Hansen, Stine Johansen, Mads Israelsen, Nikolaj Torp, Morten Beck Trelle, Shan Shan, Sönke Detlefsen, Steen Antonsen, Jørgen Ellegaard Andersen, Isabel Graupera, Pere Ginés, Maja Thiele, Aleksander Krag
المصدر: Kjaergaard, M, Lindvig, K P, Thorhauge, K H, Andersen, P, Hansen, J K, Kastrup, N, Jensen, J M, Hansen, C D, Johansen, S, Israelsen, M, Torp, N, Trelle, M B, Shan, S, Detlefsen, S, Antonsen, S, Andersen, J E, Graupera, I, Ginés, P, Thiele, M & Krag, A 2023, ' Using the ELF test, FIB-4 and NAFLD fibrosis score to screen the population for liver disease ', Journal of Hepatology . https://doi.org/10.1016/j.jhep.2023.04.002
مصطلحات موضوعية: liver stiffness, Hepatology, ELF test, non-invasive tests, screening, NASH, fatty liver disease, referral pathway, alcoholic liver disease, liver fibrosis
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المؤلفون: Martin R. Larsen, Daniel T. Weltz Wollenberg, Morten Beck Trelle, Thomas J. D. Jørgensen, Maciej Modzel
المصدر: Modzel, M, Wollenberg, D T W, Trelle, M B, Larsen, M R & Jørgensen, T J D 2021, ' Ultraviolet Photodissociation of Protonated Peptides and Proteins Can Proceed with H/D Scrambling ', Analytical chemistry, vol. 93, no. 2, pp. 691–696 . https://doi.org/10.1021/acs.analchem.0c02957
مصطلحات موضوعية: education.field_of_study, Photolysis, Ultraviolet Rays, Chemistry, Population, Photodissociation, Proteins, Protonation, Deuterium, Tandem mass spectrometry, Mass spectrometry, Orbitrap, Analytical Chemistry, Scrambling, law.invention, Ion, Crystallography, law, Protons, Peptides, education, Hydrogen
وصف الملف: application/pdf
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المؤلفون: Katrine Prier Lindvig, Maria Kjærgaard, Johanne Kragh Hansen, Katrine Thorhauge, Camilla Dalby Hansen, Stine Johansen, Mads Israelsen, Peter Andersen, Nikolaj Torp, Taus Holtug, Sönke Detlefsen, Morten Beck Trelle, Steen Antonsen, Aleksander Krag, Maja Thiele
المصدر: Journal of Hepatology. 77:S475-S476
مصطلحات موضوعية: Hepatology
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المؤلفون: Pernille Foged Jensen, Ya Min Du, Kasper D. Rand, Jeppe B. Madsen, Josef Voglmeir, Gerard Comamala, Eva Christina Østerlund, Morten Beck Trelle, Thomas J. D. Jørgensen
المصدر: Comamala, G, Madsen, J B, Voglmeir, J, Du, Y M, Jensen, P F, Østerlund, E C, Trelle, M B, Jørgensen, T J D & Rand, K D 2020, ' Deglycosylation by the Acidic Glycosidase PNGase H + Enables Analysis of N-Linked Glycoproteins by Hydrogen/Deuterium Exchange Mass Spectrometry ', Journal of The American Society for Mass Spectrometry, vol. 31, no. 11, pp. 2305-2312 . https://doi.org/10.1021/jasms.0c00258
مصطلحات موضوعية: chemistry.chemical_classification, Glycan, biology, Chemistry, Reducing agent, 010401 analytical chemistry, deglycosylation, Serpin, 010402 general chemistry, Mass spectrometry, hydrogen/deuterium exchange mass spectrometry, 01 natural sciences, 0104 chemical sciences, chemistry.chemical_compound, Biochemistry, Structural Biology, PNGase, biology.protein, TCEP, Hydrogen–deuterium exchange, Glycoside hydrolase, Glycoprotein, Spectroscopy, mass spectrometry
وصف الملف: application/pdf
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المؤلفون: Jesper S. Johansen, Lisbeth M. Andersen, Jan K. Jensen, Daniel M. Dupont, Peter A. Andreasen, Thomas J. D. Jørgensen, Morten Beck Trelle, Jeppe B. Madsen
المصدر: Madsen, J B, Andersen, L M, Dupont, D M, Trelle, M B, Johansen, J S, Jensen, J K, Jørgensen, T J D & Andreasen, P A 2016, ' An RNA Aptamer Inhibits a Mutation-Induced Inactivating Misfolding of a Serpin ', Cell Chemical Biology, vol. 23, no. 6, pp. 700–708 . https://doi.org/10.1016/j.chembiol.2016.04.013
Madsen, J B, Andersen, L M, Dupont, D M, Trelle, M B, Johansen, J S, Jensen, J K, Jørgensen, T J D & Andreasen, P A 2016, ' An RNA Aptamer Inhibits a Mutation-Induced Inactivating Misfolding of a Serpin ', Cell Chemical Biology, vol. 23, no. 6, pp. 700-708 . https://doi.org/10.1016/j.chembiol.2016.04.013مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Protein Folding, Proteases, animal structures, Aptamer, medicine.medical_treatment, Clinical Biochemistry, Biology, Serpin, medicine.disease_cause, Biochemistry, Mass Spectrometry, Serine, 03 medical and health sciences, Drug Discovery, Journal Article, medicine, Humans, Molecular Biology, Serpins, Pharmacology, Mutation, Protease, 030102 biochemistry & molecular biology, Deuterium Exchange Measurement, RNA, Aptamers, Nucleotide, Surface Plasmon Resonance, 030104 developmental biology, embryonic structures, Molecular Medicine, Protein folding
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المؤلفون: Morten Beck Trelle, Georgia Orfanoudaki, Spyridoula Karamanou, Thomas J. D. Jørgensen, Jozefien De Geyter, Marina Koukaki, Athina G. Portaliou, Katerina E. Chatzi, Anastassios Economou, Marios Frantzeskos Sardis, Alexandra Tsirigotaki
المصدر: Tsirigotaki, A, Chatzi, K E, Koukaki, M, De Geyter, J, Portaliou, A G, Orfanoudaki, G, Sardis, M F, Trelle, M B, Jørgensen, T J D, Karamanou, S & Economou, A 2018, ' Long-Lived Folding Intermediates Predominate the Targeting-Competent Secretome ', Structure, vol. 26, no. 5, pp. 695-707.e5 . https://doi.org/10.1016/j.str.2018.03.006
مصطلحات موضوعية: 0301 basic medicine, Signal peptide, Models, Molecular, Protein Folding, Protein Sorting Signals, molten globule, 03 medical and health sciences, Protein Domains, Structural Biology, protein secretion, Translocase, folding intermediate, signal peptide, HDX-MS, Molecular Biology, protein disorder, targeting, 030102 biochemistry & molecular biology, biology, Chemistry, aggregation, Proteins, kinetically stalled folding, Molten globule, Cell biology, Protein Transport, 030104 developmental biology, Secretory protein, Cytoplasm, biology.protein, secretory protein mature domain, Hydrophobic and Hydrophilic Interactions, Protein trafficking
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المصدر: Scientific Reports
Petersen, M, Madsen, J B, Jørgensen, T J D & Trelle, M B 2017, ' Conformational preludes to the latency transition in PAI-1 as determined by atomistic computer simulations and hydrogen/deuterium-exchange mass spectrometry ', Scientific Reports, vol. 7, no. 1, 6636 . https://doi.org/10.1038/s41598-017-06290-0
Scientific Reports, Vol 7, Iss 1, Pp 1-13 (2017)مصطلحات موضوعية: 0301 basic medicine, Conformational change, Protein Conformation, Science, Molecular Dynamics Simulation, Serpin, Bioinformatics, Mass spectrometry, Mass Spectrometry, Article, 03 medical and health sciences, Molecular dynamics, Protein structure, Plasminogen Activator Inhibitor 1, Journal Article, Humans, Multidisciplinary, 030102 biochemistry & molecular biology, Chemistry, Protein tertiary structure, 030104 developmental biology, Biophysics, Medicine, Hydrogen–deuterium exchange, Function (biology)
وصف الملف: application/pdf
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المؤلفون: Peter A. Andreasen, Thomas J. D. Jørgensen, Morten Beck Trelle, Jeppe B. Madsen, Daniel M. Dupont
المصدر: Trelle, M B, Dupont, D M, Madsen, J B, Andreasen, P & Jørgensen, T J D 2014, ' Dissecting the Effect of RNA Aptamer Binding on the Dynamics of Plasminogen Activator Inhibitor 1 Using Hydrogen/Deuterium Exchange Mass Spectrometry ', A C S Chemical Biology, vol. 9, no. 1, pp. 174-182 . https://doi.org/10.1021/cb400619v
Trelle, M B, Dupont, D M, Madsen, J B, Andreasen, P A & Jørgensen, T J D 2014, ' Dissecting the effect of RNA aptamer binding on the dynamics of plasminogen activator inhibitor 1 using hydrogen/deuterium exchange mass spectrometry ', A C S Chemical Biology, vol. 9, no. 1, pp. 174-182 . https://doi.org/10.1021/cb400619vمصطلحات موضوعية: Models, Molecular, Protein Conformation, Protein Stability, Chemistry, Aptamer, Protein domain, RNA, General Medicine, Aptamers, Nucleotide, Serpin, Deuterium, Biochemistry, Mass Spectrometry, Protein structure, Plasminogen Activator Inhibitor 1, Humans, Molecular Medicine, Hydrogen–deuterium exchange, Plasminogen activator, Hydrogen, Protein ligand
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المؤلفون: Morten Beck Trelle, Alexandra Tsirigotaki, Malvina Papanastasiou, Thomas J. D. Jørgensen, Anastassios Economou
المصدر: Tsirigotaki, A, Papanastasiou, M, Trelle, M B, Jørgensen, T J D & Economou, A 2017, Analysis of Translocation-Competent Secretory Proteins by HDX-MS . in Methods in Enzymology . vol. 586, Academic Press, Methods in Enzymology, vol. 586, pp. 57-83 . https://doi.org/10.1016/bs.mie.2016.09.028
مصطلحات موضوعية: 0301 basic medicine, Proteolysis, Translocation, Recombinant Proteins/chemistry, Chromosomal translocation, 01 natural sciences, 03 medical and health sciences, Disorder, medicine, Hydrogen/deuterium exchange, Sec secretion, Amino Acid Sequence, Pulsed HDX, Cellular compartment, Exported proteins, Mass spectrometry, medicine.diagnostic_test, Chemistry, 010401 analytical chemistry, Deuterium Exchange Measurement, Local HDX, 0104 chemical sciences, Protein Transport, 030104 developmental biology, Membrane, Secretory protein, Biochemistry, Statistical analysis, Cytoplasm, Escherichia coli Proteins/chemistry, Escherichia coli/metabolism, Proteome/chemistry, Biophysics, Hydrogen–deuterium exchange, Protein folding, Comparative HDX, Protein Processing, Post-Translational
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المؤلفون: Cynthia B. Peterson, Morten Beck Trelle, Thomas J. D. Jørgensen, Tihami Qureshi, Joel C. Bucci, Carlee S. McClintock
المصدر: Bucci, J C, Trelle, M B, McClintock, C S, Qureshi, T, Jørgensen, T J D & Peterson, C B 2016, ' Copper(II) ions increase plasminogen activator inhibitor type 1 dynamics in key structural regions that govern stability ', Biochemistry, vol. 55, no. 31, pp. 4386-4398 . https://doi.org/10.1021/acs.biochem.6b00256
مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Protein Conformation, medicine.medical_treatment, Plasma protein binding, Molecular Dynamics Simulation, 030204 cardiovascular system & hematology, Ligands, Biochemistry, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, Protein structure, Somatomedin B, Somatomedins, Plasminogen Activator Inhibitor 1, medicine, Journal Article, Humans, Histidine, Protein Interaction Domains and Motifs, Amino Acid Sequence, Vitronectin, Binding site, Binding Sites, Protease, biology, Protein Stability, Chemistry, Fibrinolysis, Deuterium Exchange Measurement, Recombinant Proteins, Kinetics, 030104 developmental biology, Plasminogen activator inhibitor-1, Unfolded Protein Response, Biophysics, biology.protein, Mutant Proteins, Hydrogen–deuterium exchange, Copper, Protein Binding
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المؤلفون: Ole N. Jensen, Sabine Amon, Thomas J. D. Jørgensen, Morten Beck Trelle
المصدر: Amon, S, Trelle, M B, Jensen, O N & Jørgensen, T J D 2012, ' Spatially resolved protein hydrogen exchange measured by subzero-cooled chip-based nanoelectrospray ionization tandem mass spectrometry ', Analytical Chemistry, vol. 84, no. 10, pp. 4467-73 . https://doi.org/10.1021/ac300268r
مصطلحات موضوعية: Protein mass spectrometry, Ubiquitin, Chemistry, Temperature, Analytical chemistry, Deuterium Exchange Measurement, Proteins, Hydrogen-Ion Concentration, Thermal ionization mass spectrometry, Deuterium, Tandem mass spectrometry, Mass spectrometry, Chemistry Techniques, Analytical, Analytical Chemistry, Fragmentation (mass spectrometry), Tandem Mass Spectrometry, Nanotechnology, Hydrogen–deuterium exchange, beta 2-Microglobulin, Hydrogen
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المؤلفون: Ole N. Jensen, Morten Beck Trelle
المصدر: Trelle, M B & Jensen, O N 2008, ' Utility of immonium ions for assignment of epsilon-N-acetyllysine-containing peptides by tandem mass spectrometry ', Analytical Chemistry, vol. 80, no. 9, pp. 3422-3430 . https://doi.org/10.1021/ac800005n
مصطلحات موضوعية: chemistry.chemical_classification, Spectrometry, Mass, Electrospray Ionization, Chromatography, Lysine, Electrospray ionization, Peptide, Mass spectrometry, Tandem mass spectrometry, Sensitivity and Specificity, Analytical Chemistry, Ion, chemistry.chemical_compound, chemistry, Tandem Mass Spectrometry, Acetylation, Acetyllysine, Peptides, Algorithms
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المؤلفون: Jeppe B. Madsen, Kasper D. Rand, Thomas J. D. Jørgensen, Morten Beck Trelle, Pernille Foged Jensen, Gerard Comamala
المصدر: Jensen, P F, Comamala, G, Trelle, M B, Madsen, J B, Jørgensen, T J D & Rand, K D 2016, ' Removal of N-linked glycosylations at acidic pH by PNGase a facilitates hydrogen/deuterium exchange mass spectrometry analysis of N-Linked glycoproteins ', Analytical Chemistry, vol. 88, no. 24, pp. 12479-12488 . https://doi.org/10.1021/acs.analchem.6b03951
مصطلحات موضوعية: 0301 basic medicine, Protein glycosylation, Models, Molecular, Glycan, Glycosylation, Mass spectrometry, 01 natural sciences, Mass Spectrometry, Analytical Chemistry, 03 medical and health sciences, chemistry.chemical_compound, Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase, Amino Acid Sequence, Glycoproteins, chemistry.chemical_classification, biology, 010401 analytical chemistry, Glycopeptides, Deuterium Exchange Measurement, Oligosaccharide, Hydrogen-Ion Concentration, Trastuzumab, 0104 chemical sciences, carbohydrates (lipids), 030104 developmental biology, Enzyme, Biochemistry, chemistry, biology.protein, Hydrogen–deuterium exchange, Glycoprotein
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المؤلفون: Morten Beck Trelle, Ole N. Jensen
المصدر: Trelle, M B & Jensen, O N 2007, ' Functional proteomics in histone research and epigenetics ', Expert Review of Proteomics, vol. 4, no. 4, pp. 491-503 . https://doi.org/10.1586/14789450.4.4.491
مصطلحات موضوعية: Proteomics, Regulation of gene expression, Chromatin Immunoprecipitation, Computational biology, Biology, ChIP-on-chip, Bioinformatics, Biochemistry, Mass Spectrometry, Epigenesis, Genetic, Histones, Histone, Functional proteomics, biology.protein, Epigenetics, Molecular Biology, Chromatin immunoprecipitation, Oligonucleotide Array Sequence Analysis
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المؤلفون: Martin R. Larsen, Morten Beck Trelle, Ole N. Jensen, Tine E. Thingholm
المصدر: BioTechniques. 40:790-798
مصطلحات موضوعية: chemistry.chemical_classification, Cell signaling, Protein structure, Biochemistry, Chemistry, Tandem mass spectrometry, Tandem mass tag, Mass spectrometry, Quantitative analysis (chemistry), Peptide sequence, General Biochemistry, Genetics and Molecular Biology, Biotechnology, Amino acid
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المصدر: Matthiesen, R, Trelle, M B, Højrup, P, Bunkenborg, J & Jensen, O N 2005, ' VEMS 3.0 : Algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins ', Journal of Proteome Research, vol. 4, pp. 2338-2347 . https://doi.org/10.1021/pr050264q
مصطلحات موضوعية: Proteomics, Databases, Factual, Proteome, Peptide, Computational biology, Tandem mass tag, Tandem mass spectrometry, Mass spectrometry, Methylation, Biochemistry, Gas Chromatography-Mass Spectrometry, Mass Spectrometry, Sequence Analysis, Protein, Peptide spectral library, Trypsin, Database search engine, Databases, Protein, Ions, chemistry.chemical_classification, Models, Statistical, Chromatography, Chemistry, Lysine, Computational Biology, General Chemistry, Bottom-up proteomics, Peptides, Protein Processing, Post-Translational, Algorithms, Software
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المؤلفون: Daniel Hirschberg, Peter A. Andreasen, Peter Roepstorff, Anna Jansson, Thomas J. D. Jørgensen, Morten Beck Trelle, Michael Ploug
المصدر: Trelle, M B, Hirschberg, D, Jansson, A, Ploug, M, Roepstorff, P, Andreasen, P & Jørgensen, T J D 2012, ' Hydrogen/Deuterium Exchange Mass Spectrometry Reveals Specific Changes in the Local Flexibility of Plasminogen Activator Inhibitor 1 upon Binding to the Somatomedin B Domain of Vitronectin ', Biochemistry, vol. 51, no. 41, pp. 8256-8266 . https://doi.org/10.1021/bi3008998
مصطلحات موضوعية: Models, Molecular, biology, Chemistry, Mass spectrometry, Deuterium, Biochemistry, Cofactor, Mass Spectrometry, chemistry.chemical_compound, Crystallography, Somatomedin B, Somatomedins, Plasminogen activator inhibitor-1, Plasminogen Activator Inhibitor 1, biology.protein, Biophysics, Molecule, Hydrogen–deuterium exchange, Vitronectin, Hydrogen
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المؤلفون: Marie Sofie Yoo Larsen, Randi G. Syljuåsen, Kristian Helin, Morten Beck Trelle, Stine Jørgensen, Arne Nedergaard Kousholt, Claus Storgaard Sørensen, Morten Eskildsen, Lisbeth Hansen, Kasper Fugger, Ole N. Jensen
المصدر: Jørgensen, S, Eskildsen, M, Fugger, K, Hansen, L, Yoo Larsen, M S, Kousholt, A N, Syljuåsen, R G, Trelle, M B, Nørregaard Jensen, O, Helin, K & Sørensen, C S 2011, ' SET8 is degraded via PCNA-coupled CRL4(CDT2) ubiquitylation in S phase and after UV irradiation ', Journal of Cell Biology, vol. 192, no. 1, pp. 43-54 . https://doi.org/10.1083/jcb.201009076
The Journal of Cell Biologyمصطلحات موضوعية: Ultraviolet Rays, Ubiquitin-Protein Ligases, Molecular Sequence Data, Biology, Article, Cell Line, S Phase, Histone H4, Histone H1, Proliferating Cell Nuclear Antigen, Humans, Amino Acid Sequence, Mitosis, Research Articles, G1 Phase, Ubiquitination, Nuclear Proteins, Cell Biology, Histone-Lysine N-Methyltransferase, Cell cycle, Molecular biology, Chromatin, Cell biology, Proliferating cell nuclear antigen, Ubiquitin ligase, Histone methyltransferase, biology.protein, Protein Processing, Post-Translational, DNA Damage, Protein Binding
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المؤلفون: Ole N. Jensen, Adrian Cohen, Adriana M. Salcedo-Amaya, Morten Beck Trelle, Hendrik G. Stunnenberg
المصدر: Trelle, M B, Salcedo-Amaya, A M, Cohen, A, Stunneberg, H G & Jensen, O N 2009, ' Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum ', Journal of Proteome Research, vol. 8, no. 7, pp. 3439-3450 . https://doi.org/10.1021/pr9000898
Journal of Proteome Research, 8, 7, pp. 3439-3450
Journal of Proteome Research, 8, 3439-3450مصطلحات موضوعية: Proteomics, Molecular Sequence Data, Plasmodium falciparum, Arginine, Mass spectrometry, Biochemistry, Mass Spectrometry, Histones, parasitic diseases, medicine, Animals, Humans, Amino Acid Sequence, Epigenetics, Malaria, Falciparum, Molecular Biology, Peptide sequence, biology, Lysine, General Chemistry, Trypsin, biology.organism_classification, Molecular biology, Histone, Acetylation, biology.protein, Electrophoresis, Polyacrylamide Gel, Protein Processing, Post-Translational, Chromatography, Liquid, medicine.drug
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المؤلفون: Michael F. Moran, Michael Barrett Andersen, Ole Hørning, Peter A Nielsen, Ole Vorm, Thomas Kislinger, Morten Beck Trelle, Paul Taylor
المصدر: Journal of proteome research. 8(3)
مصطلحات موضوعية: chemistry.chemical_classification, Chromatography, Proteome, Chromatography liquid, Peptide, General Chemistry, Biology, Mass spectrometry, Tandem mass spectrometry, Proteomics, Biochemistry, Highly sensitive, Mice, chemistry, Tandem Mass Spectrometry, Animals, Nanotechnology, Protein identification, Myocytes, Cardiac, Cells, Cultured, Chromatography, Liquid