المؤلفون: Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika S. Jain, Mirjana Efremova, Sarah A. Teichmann, Vaibhav Rajan, Xiuwei Zhang

المصدر: Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/c9a327a9fd914f9a8225b56b9fdade17

المؤلفون: Mika Sarkin Jain, Krzysztof Polanski, Cecilia Dominguez Conde, Xi Chen, Jongeun Park, Lira Mamanova, Andrew Knights, Rachel A. Botting, Emily Stephenson, Muzlifah Haniffa, Austen Lamacraft, Mirjana Efremova, Sarah A. Teichmann

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-26 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/dc71585380b14353bc70ba25b87a9a35

المؤلفون: Frank Penkava, Martin Del Castillo Velasco-Herrera, Matthew D. Young, Nicole Yager, Lilian N. Nwosu, Arthur G. Pratt, Alicia Lledo Lara, Charlotte Guzzo, Ash Maroof, Lira Mamanova, Suzanne Cole, Mirjana Efremova, Davide Simone, Andrew Filer, Chrysothemis C. Brown, Andrew L. Croxford, John D. Isaacs, Sarah Teichmann, Paul Bowness, Sam Behjati, M. Hussein Al-Mossawi

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/41e60fd553ac455d9a90df903aa0ed85

المؤلفون: Anastasia Prokopi, Christoph H Tripp, Bart Tummers, Florian Hornsteiner, Sarah Spoeck, Jeremy Chase Crawford, Derek R Clements, Mirjana Efremova, Katharina Hutter, Lydia Bellmann, Giuseppe Cappellano, Bruno L Cadilha, Daniela Ortner, Zlatko Trajanoski, Suzie Chen, Juliana Idoyaga, Douglas R Green, Patrizia Stoitzner

المصدر: Journal for ImmunoTherapy of Cancer, Vol 9, Iss 1 (2021)

مصطلحات موضوعية: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

وصف الملف: electronic resource

Relation: https://jitc.bmj.com/content/9/1/e000832.full; https://doaj.org/toc/2051-1426

URL الوصول: https://doaj.org/article/66831436d29b40f3abee1e0b88929637

المؤلفون: Liora Haim-Vilmovsky, Johan Henriksson, Jennifer A Walker, Zhichao Miao, Eviatar Natan, Gozde Kar, Simon Clare, Jillian L Barlow, Evelina Charidemou, Lira Mamanova, Xi Chen, Valentina Proserpio, Jhuma Pramanik, Steven Woodhouse, Anna V Protasio, Mirjana Efremova, Julian L Griffin, Matt Berriman, Gordon Dougan, Jasmin Fisher, John C Marioni, Andrew N J McKenzie, Sarah A Teichmann

المصدر: PLoS ONE, Vol 16, Iss 5, p e0251233 (2021)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/3d39463ca138487e88bb41bb5b120a66

المؤلفون: Sarah Davidson, Mirjana Efremova, Angela Riedel, Bidesh Mahata, Jhuma Pramanik, Jani Huuhtanen, Gozde Kar, Roser Vento-Tormo, Tzachi Hagai, Xi Chen, Muzlifah A. Haniffa, Jacqueline D. Shields, Sarah A. Teichmann

المصدر: Cell Reports, Vol 31, Iss 7, Pp - (2020)

مصطلحات موضوعية: melanoma, cancer-associated fibroblast, tumour microenvironment, single-cell sequencing, cell-cell communication, stroma, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124720305817; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/08831b1a045941c880024a9df8c08ebc

المؤلفون: Victoria Klepsch, Natascha Hermann-Kleiter, Patricia Do-Dinh, Bojana Jakic, Anne Offermann, Mirjana Efremova, Sieghart Sopper, Dietmar Rieder, Anne Krogsdam, Gabriele Gamerith, Sven Perner, Alexandar Tzankov, Zlatko Trajanoski, Dominik Wolf, Gottfried Baier

المصدر: Nature Communications, Vol 9, Iss 1, Pp 1-13 (2018)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/6708fd1e3e99478a95dc46aa8093f81c

المؤلفون: Mirjana Efremova, Dietmar Rieder, Victoria Klepsch, Pornpimol Charoentong, Francesca Finotello, Hubert Hackl, Natascha Hermann-Kleiter, Martin Löwer, Gottfried Baier, Anne Krogsdam, Zlatko Trajanoski

المصدر: Nature Communications, Vol 9, Iss 1, Pp 1-13 (2018)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/e257159229014b539553cb86455044f3

المؤلفون: Mirjana Efremova, Francesca Finotello, Dietmar Rieder, Zlatko Trajanoski

المصدر: Frontiers in Immunology, Vol 8 (2017)

مصطلحات موضوعية: next-generation sequencing, immunoediting, tumor heterogeneity, somatic mutations, cancer vaccines, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fimmu.2017.01679/full; https://doaj.org/toc/1664-3224

URL الوصول: https://doaj.org/article/e6a3123a285e40ec9f0fd1ae9852094d

المؤلفون: Mika Sarkin Jain (11860898), Krzysztof Polanski (792922), Cecilia Dominguez Conde (11860901), Xi Chen (35903), Jongeun Park (11860904), Lira Mamanova (10818877), Andrew Knights (11860907), Rachel A. Botting (11860910), Emily Stephenson (11860913), Muzlifah Haniffa (669689), Austen Lamacraft (11860916), Mirjana Efremova (11860919), Sarah A. Teichmann (10818886)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Developmental Biology, Cancer, Inorganic Chemistry, Infectious Diseases, Plant Biology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, transcription factor expression, outperforms current approaches, enables quantitative comparison, binding site accessibility, new thymus dataset, integrate cells along, chromatin accessibility, temporal trajectory, spatial data, revealing patterns, rapidly growing, novel algorithm, many fields, linear mapping, leverages features, extremely scalable

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_MultiMAP_dimensionality_reduction_and_integration_of_multimodal_data/17304971

الاتاحة: https://doi.org/10.6084/m9.figshare.17304971.v1

المؤلفون: Mika Sarkin Jain (11860898), Krzysztof Polanski (792922), Cecilia Dominguez Conde (11860901), Xi Chen (35903), Jongeun Park (11860904), Lira Mamanova (10818877), Andrew Knights (11860907), Rachel A. Botting (11860910), Emily Stephenson (11860913), Muzlifah Haniffa (669689), Austen Lamacraft (11860916), Mirjana Efremova (11860919), Sarah A. Teichmann (10818886)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Developmental Biology, Cancer, Inorganic Chemistry, Infectious Diseases, Plant Biology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, transcription factor expression, outperforms current approaches, enables quantitative comparison, binding site accessibility, new thymus dataset, integrate cells along, chromatin accessibility, temporal trajectory, spatial data, revealing patterns, rapidly growing, novel algorithm, many fields, linear mapping, leverages features, extremely scalable

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_MultiMAP_dimensionality_reduction_and_integration_of_multimodal_data/17304968

الاتاحة: https://doi.org/10.6084/m9.figshare.17304968.v1

المؤلفون: Mika Sarkin Jain (11860898), Krzysztof Polanski (792922), Cecilia Dominguez Conde (11860901), Xi Chen (35903), Jongeun Park (11860904), Lira Mamanova (10818877), Andrew Knights (11860907), Rachel A. Botting (11860910), Emily Stephenson (11860913), Muzlifah Haniffa (669689), Austen Lamacraft (11860916), Mirjana Efremova (11860919), Sarah A. Teichmann (10818886)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Developmental Biology, Cancer, Inorganic Chemistry, Infectious Diseases, Plant Biology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, transcription factor expression, outperforms current approaches, enables quantitative comparison, binding site accessibility, new thymus dataset, integrate cells along, chromatin accessibility, temporal trajectory, spatial data, revealing patterns, rapidly growing, novel algorithm, many fields, linear mapping, leverages features, extremely scalable

Relation: https://figshare.com/articles/journal_contribution/Additional_file_3_of_MultiMAP_dimensionality_reduction_and_integration_of_multimodal_data/17304977

الاتاحة: https://doi.org/10.6084/m9.figshare.17304977.v1

المؤلفون: Liora Haim-Vilmovsky (6285965), Johan Henriksson (462482), Jennifer A. Walker (10818871), Zhichao Miao (838497), Eviatar Natan (9041100), Gozde Kar (256068), Simon Clare (125268), Jillian L. Barlow (7775987), Evelina Charidemou (10818874), Lira Mamanova (10818877), Xi Chen (35903), Valentina Proserpio (10818880), Jhuma Pramanik (5894651), Steven Woodhouse (3490688), Anna V. Protasio (7617119), Mirjana Efremova (10818883), Julian L. Griffin (152780), Matt Berriman (9251), Gordon Dougan (30395), Jasmin Fisher (29195), John C. Marioni (8027027), Andrew N. J. McKenzie (7682945), Sarah A. Teichmann (10818886)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Immunology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, CD 4-conditional Rora, ILC 2, Treg cells, Th 2 cells, IL -33, RORA-reporter mouse, lung inflammation, Nippostrongylus brasiliensis infection, Mapping Rora expression, vivo type 2 infection models, knockout mouse, stimulation screen, transcription factor Rora, CCL 7

Relation: https://figshare.com/articles/journal_contribution/Collection_of_supplementary_S1_S5_Figs_/14613049

الاتاحة: https://doi.org/10.1371/journal.pone.0251233.s001

المؤلفون: Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika Sarkin Jain, Mirjana Efremova, Sarah Teichmann, Vaibhav Rajan, Xiuwei Zhang

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::61e70030da7988bcc8879f2c99fdbd67
https://doi.org/10.21203/rs.3.rs-2022586/v1

المؤلفون: Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika S Jain, Mirjana Efremova, Sarah A Teichmann, Vaibhav Rajan, Xiuwei Zhang

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::09d1b6623d580f7c4d51586608b7dc27
https://doi.org/10.1101/2022.05.17.492336

المؤلفون: Megan Perrett, Lucy Pickard, Emil Kumar, Giuseppe Palladino, Faraz Khan, Carina Edmondson, Connor Knight, Edward Poynton, Janet Matthews, Shamzah Araf, Andrew James Clear, Maria Calaminici, John G. Gribben, Hamish King, Mirjana Efremova, Jun Wang, Jessica Okosun

المصدر: Blood. 140:748-749

مصطلحات موضوعية: Immunology, Cell Biology, Hematology, Biochemistry

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::27d860ca31e2e0a76d7fba67535c5d10
https://doi.org/10.1182/blood-2022-159995

المؤلفون: Nicola K. Wilson, Michal Slyper, David Dixon, Gary Reynolds, Emily Stephenson, Berthold Göttgens, Irene Roberts, Petra Balogh, Anindita Roy, Bo Li, Monika S. Kowalczyk, Aviv Regev, Nicole Mende, Hamish W King, Iwo Kucinski, Laura Jardine, Mirjana Efremova, Meghan Acres, Orr Ashenberg, Caroline Shrubsole, Thomas Creasey, Dave Horsfall, Mika Sarkin Jain, Simone Webb, Elizabeth Poyner, Steven Lisgo, Rachel Queen, Kerstin B. Meyer, Kirsty Ambridge, John E. Lawrence, Natalina Elliott, Elena Prigmore, Jaume Bacardit, Rachel A. Botting, Danielle Dionne, Muzlifah Haniffa, Justin Engelbert, Marcin Tabaka, Rafiqul Hussain, Myriam L. R. Haltalli, Christopher D. Carey, Thomas Ness, Bayanne Olabi, Deborah J. Henderson, Daniel Maunder, Elisa Laurenti, Keir Pickard, Orit Rozenblatt-Rosen, Rowen Coulthard, Jim McGrath, Sam Behjati, Issac Goh, David McDonald, Sorcha O’Byrne, Timothy L. Tickle, Emma Dann, Claire G. Jones, Sarah A. Teichmann, Caitlin Murnane, Dorin-Mirel Popescu, Jonathan Coxhead, Mariana Quiroga Londoño, Michael W. Mather, Andrew Filby

المساهمون: Webb, Simone [0000-0003-3058-8952], Goh, Issac [0000-0002-6397-3518], Quiroga Londoño, Mariana [0000-0003-2352-0773], Mather, Michael [0000-0001-7972-7111], Botting, Rachel A [0000-0001-9595-4605], Horsfall, Dave [0000-0002-8086-812X], Mende, Nicole [0000-0002-5078-2333], Dann, Emma [0000-0002-7400-7438], King, Hamish [0000-0001-5972-8926], Kucinski, Iwo [0000-0002-9385-0359], Haltalli, Myriam LR [0000-0002-0886-4466], Meyer, Kerstin B [0000-0001-5906-1498], Efremova, Mirjana [0000-0002-8107-9974], Creasey, Thomas [0000-0001-8536-5428], Bacardit, Jaume [0000-0002-2692-7205], Coxhead, Jonathan [0000-0002-6128-9560], Tickle, Timothy L [0000-0002-6592-6272], Rozenblatt-Rosen, Orit [0000-0001-6313-3570], Regev, Aviv [0000-0003-3293-3158], Behjati, Sam [0000-0002-6600-7665], Laurenti, Elisa [0000-0002-9917-9092], Wilson, Nicola K [0000-0003-0865-7333], Roy, Anindita [0000-0001-8607-5748], Göttgens, Berthold [0000-0001-6302-5705], Teichmann, Sarah A [0000-0002-6294-6366], Haniffa, Muzlifah [0000-0002-3927-2084], Apollo - University of Cambridge Repository

المصدر: Nature

مصطلحات موضوعية: Myeloid, Lymphocyte, Bone Marrow Cells, Biology, Article, Fetus, Erythroid Cells, Bone Marrow, medicine, Humans, Myeloid Cells, Progenitor cell, B-Lymphocytes, Multidisciplinary, Immunity, Endothelial Cells, Dendritic cell, Dendritic Cells, Hematopoiesis, Eosinophils, Haematopoiesis, medicine.anatomical_structure, Cord blood, Immune System, Immunology, Bone marrow, Down Syndrome, Stromal Cells, Granulocytes

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::616a4b608e777594fb92efca1fe30968
https://doi.org/10.1038/s41586-021-03929-x

المؤلفون: Mirjana Efremova, Roser Vento-Tormo, Miquel Vento-Tormo, Sarah A. Teichmann

المصدر: Nature Protocols. 15:1484-1506

مصطلحات موضوعية: 0303 health sciences, Cell signaling, Computer science, Protein subunit, Computational genomics, Computational biology, Telecommunications network, General Biochemistry, Genetics and Molecular Biology, Visualization, 03 medical and health sciences, Crosstalk (biology), 0302 clinical medicine, User interface, Receptor, 030217 neurology & neurosurgery, 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::8a8ba28300514edf85d287610c75fdbe
https://doi.org/10.1038/s41596-020-0292-x

المؤلفون: Mirjana Efremova, Sarah A. Teichmann

المصدر: Nature Methods. 17:14-17

مصطلحات موضوعية: 0303 health sciences, Modalities, Computer science, Gene regulatory network, Cell Biology, Computational biology, Epigenome, Omics, Biochemistry, Genome, Developmental dynamics, Omics data, 03 medical and health sciences, Profiling (information science), Molecular Biology, 030304 developmental biology, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::377f496ae41e0b8637744c8a401b3e05
https://doi.org/10.1038/s41592-019-0692-4

المؤلفون: Mirjana Efremova, Ross Dobie, Jonathan A. Fallowfield, Prakash Ramachandran, Stephen J. Wigmore, John P. Iredale, Ewen M Harrison, Kylie P. Matchett, John C. Marioni, David R. Mole, Christopher J. Weston, John A. Marwick, John R. Wilson-Kanamori, Roser Vento-Tormo, Philip N. Newsome, Sarah A. Teichmann, Neil C. Henderson, Neil O. Carragher, Richard S Taylor, Jordan R. Portman, Elena Dora, N T Luu, Frank Tacke, Chris P. Ponting, Jeffrey W. Pollard, Beth E. P. Henderson, Timothy J. Kendall, M Brice

المساهمون: Marioni, John [0000-0001-9092-0852], Teichmann, Sarah [0000-0002-6294-6366], Apollo - University of Cambridge Repository

المصدر: Nature
Ramachandran, P, Dobie, R, Wilson-Kanamori, J R, Dora, E F, Henderson, B E P, Luu, N T, Portman, J R, Matchett, K P, Brice, M, Marwick, J A, Taylor, R S, Efremova, M, Vento-Tormo, R, Carragher, N O, Kendall, T J, Fallowfield, J A, Harrison, E M, Mole, D J, Wigmore, S J, Newsome, P N, Weston, C J, Iredale, J P, Tacke, F, Pollard, J W, Ponting, C P, Marioni, J C, Teichmann, S A & Henderson, N C 2019, ' Resolving the fibrotic niche of human liver cirrhosis at single-cell level ', Nature, vol. 575, no. 7783, pp. 512–518 . https://doi.org/10.1038/s41586-019-1631-3

مصطلحات موضوعية: Male, Liver Cirrhosis, Cell type, Cirrhosis, Receptor, Platelet-Derived Growth Factor alpha, Liver cytology, Notch signaling pathway, Receptors, Cell Surface, Biology, Tetraspanin 29, Article, Transcriptome, 03 medical and health sciences, Mice, 0302 clinical medicine, Single-cell analysis, Fibrosis, medicine, Hepatic Stellate Cells, Animals, Humans, Cell Lineage, Receptors, Immunologic, 030304 developmental biology, 0303 health sciences, Multidisciplinary, Membrane Glycoproteins, Sequence Analysis, RNA, Macrophages, Mesenchymal stem cell, Transendothelial and Transepithelial Migration, Endothelial Cells, Membrane Proteins, medicine.disease, 3. Good health, Phenotype, Liver, 030220 oncology & carcinogenesis, Case-Control Studies, Cancer research, Hepatocytes, Female, Single-Cell Analysis, Duffy Blood-Group System

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd3362c457a2a6d54f3fadf6498190b2
http://europepmc.org/articles/PMC6876711