المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Patient_characteristics_/13723679

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s001

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Inflammatory_markers_in_blood_and_synovial_fluid_of_patients_/13723685

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s002

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Number_of_collected_isolates_per_patient_/13723688

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s003

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Antibiotic_susceptibility_in_i_S_epidermidis_i_infection_and_non-clonal_nose_isolates_/13723694

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s005

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/SNP_counts_within_infections_INF_isolates_/13723700

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s007

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/SNP_counts_within_nose_isolates_CloNo_isolates_na_not_applicable_/13723706

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s008

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/SNP_counts_between_INF_and_CloNo_isolates_/13723709

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s009

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Rearrangements_between_INF_and_CloNo_isolates_/13723712

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s010

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Intra-clonal_AckA_variants_/13723715

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s011

المؤلفون: Anna Both (5095271), Jiabin Huang (494272), Minyue Qi (9292673), Christian Lausmann (10105049), Samira Weißelberg (10105052), Henning Büttner (709971), Susanne Lezius (3207351), Antonio Virgilio Failla (144420), Martin Christner (408572), Marc Stegger (245293), Thorsten Gehrke (1808341), Sharmin Baig (9179097), Mustafa Citak (10105055), Malik Alawi (627959), Martin Aepfelbacher (240477), Holger Rohde (273755)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Evolutionary Biology, Ecology, Cancer, Science Policy, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, SCC mec element, infection environments, nosocomial infection, genotypic changes, gene loci, genotypic features, biofilm formation, within-host population heterogeneity, epidermidis populations, clonal lines, acetate kinase, within-host diversification shape, sequence type, Staphylococcus epidermidis populati., infection-supporting phenotypes, flexibly repurpose, SCC mec, colonizing S, infection-associated phenotypic, ST

Relation: https://figshare.com/articles/journal_contribution/Regulation_of_i_agr_i_-genes_and_i_psm_i_-genes_in_RNA-Seq_analysis_/13723718

الاتاحة: https://doi.org/10.1371/journal.ppat.1009304.s012

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/figure/Analysis_of_infection_conditions_/17045075

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s001

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/figure/Epigenetic_and_transcriptional_regulation_of_Rho_GTPase_pathway_genes_in_i_Y_enterocolitica_i_infected_macrophages_/17045087

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s005

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/dataset/Analysis_of_latent_enhancers_/17045102

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s010

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/figure/Analysis_of_association_between_histone_marks_and_gene_expression_/17045081

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s003

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/figure/Confirmation_of_ChIP-seq_and_RNA-seq_results_by_qPCR_/17045078

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s002

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/dataset/Analysis_of_enhancer_regions_in_E1-4_classes_/17045099

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s009

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/dataset/_i_Yersinia_enterocolitica_i_strains_used_in_the_study_/17045093

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s007

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/dataset/Metabolic_pathways_in_Prevention_profile_/17045111

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s013

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/dataset/Enriched_pathways_associated_with_trafficking_MAPK_signaling_Akt_signaling_and_cell_death_/17045138

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s022

المؤلفون: Indra Bekere (11726315), Jiabin Huang (494272), Marie Schnapp (2829599), Maren Rudolph (11726318), Laura Berneking (240470), Klaus Ruckdeschel (240475), Adam Grundhoff (121733), Thomas Günther (247952), Nicole Fischer (62348), Martin Aepfelbacher (240477)

مصطلحات موضوعية: Microbiology, Cell Biology, Genetics, Molecular Biology, Immunology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, seq analyses showed, reprogram gene expression, div >< p, corresponding gene expression, approximately 14500 loci, wide chromatin immunoprecipitation, alters chromatin states, rho gtpase regulation, associated molecular patterns, primary human macrophages, yersinia enterocolitica <, chromatin localization, yersinia <, human macrophages, enterocolitica <, varying degrees, underlying mechanisms, new level, new aspect, modulatory activities, largely unknown, investigated whether

Relation: https://figshare.com/articles/dataset/Analysis_of_Rho_GTPase_pathway_genes_in_promoter_and_enhancer_classes_/17045117

الاتاحة: https://doi.org/10.1371/journal.ppat.1010074.s015