المؤلفون: Pardo-Palacios, FJ, Wang, DJ, Reese, F, Diekhans, M, Carbonell-Sala, S, Williams, B, Loveland, JE, De María, M, Adams, MS, Balderrama-Gutierrez, G, Behera, AK, Martinez, JMG, Hunt, T, Lagarde, J, Liang, CE, Li, HR, Meade, MJ, Amador, DAM, Prjibelski, Andrey, Birol, I, Bostan, H, Brooks, AM, Çelik, MH, Chen, Y, Du, MRM, Felton, C, Göke, J, Hafezqorani, S, Herwig, R, Kawaji, H, Lee, JS, Li, JL, Lienhard, M, Mikheenko, A, Mulligan, D, Nip, KM, Pertea, M, Ritchie, ME, Sim, AD, Tang, AD, Wan, YK, Wang, CQ, Wong, Brandon Y., Yang, C, Barnes, I, Berry, AE, Capella-Gutierrez, S, Cousineau, A, Dhillon, N, Fernandez-Gonzalez, JM, Ferrández-Peral, L, Garcia-Reyero, N, Götz, S, Hernandez-Ferrer, C, Kondratova, L, Liu, Tianyuan, Martinez-Martin, A, Menor, C, Mestre-Tomás, J, Mudge, JM, Panayotova, NG, Paniagua, A, Repchevsky, D, Ren, XJ, Rouchka, E, Saint-John, B, Sapena, E, Sheynkman, L, Smith, ML, Suner, MM, Takahashi, H, Youngworth, IA, Carninci, P, Denslow, ND, Guigó, R, Hunter, ME, Maehr, R, Shen, Y, Tilgner, HU, Wold, BJ, Vollmers, C, Frankish, A, Au, KF, Sheynkman, GM, Mortazavi, A, Conesa, A, Brooks, AN

المساهمون: Department of Computer Science, Algorithmic Bioinformatics

مصطلحات موضوعية: Biochemistry, cell and molecular biology, Computer and information sciences

وصف الملف: application/pdf

Relation: We thank Lexogen, ONT and PacBio for helpful discussions. ONT provided partial support for flow cells and reagents. We thank T. Sasaki and D. Gilbert for providing the F121-9 hybrid mouse ES cells and K. M. Parsi for assistance with human H1-hES cells and H1-DE cells. We also thank M. Akeson and M. Jain for providing resources and technical advice for Nanopore sequencing. We thank J. Visser for contributing artwork that gives an overview of the LRGASP Consortium. The project is supported by the following grants: Pew Charitable Trust (A.N.B.), NIGMS R35GM138122 (A.N.B.), NHGRI R21HG011280 (A. Conesa, J.M.-T., A.M.-M., A.P. and L.F.-P.), Spanish Ministry of Science PID2020-119537RB-10 (A. Conesa and F.J.P.), NIGMS R35GM142647 (G.M.S.), NIGMS R35GM133569 (C.V.), NHGRI U41HG007234 (J. Lagarde, M.D., R.G., S.C.-S., J.E.L., J.M.G., T.H., I. Barnes, A.E.B., J.M.M. and A.F.), NHGRI F31HG010999 (A.D.T.) and UM1 HG009443 (A. Mortazavi and B.W.), NHGRI R01HG008759 and R01HG011469 (K.F.A., D.W. and H.L.), NHGRI R01HG007182 (I. Birol, K.M.N., S.H. and C.Y.), NHGRI UM1HG009402 (Y.S.), NHMRC Investigator Grant GNT2017257 (M.E.R.), Comunitat Valenciana Grant ACIF/2018/290 (F.J.P.), Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation (grant no. 2019-002443 to M.E.R.), an institutional fund from the Department of Biomedical Informatics, The Ohio State University (K.F.A., D.W. and H.L.), an institutional fund from the Department of Computational Medicine and Bioinformatics, University of Michigan (K.F.A., D.W. and H.L.), SPBU 73023672 (A.P.), AMED 22kk0305013h9903, 23kk0305024h0001 (H.K.), Wellcome Trust (WT222155/Z/20/Z) and European Molecular Biology Laboratory (A.F.). P.C. acknowledges the contribution of funds from MEXT (Ministry of Education, Culture, Sports, Science and Technology of Japan) to RIKEN. We acknowledge M. T. Walsh (University of Florida) and E. Schiller (Homosassa Springs Park) for providing archive Lorelei blood samples. We acknowledge the support of the Spanish Ministry of Science and Innovation to the EMBL partnership, Centro de Excelencia Severo Ochoa and CERCA Programme/Generalitat de Catalunya and the support of the German Federal Ministry of Education and Research with grant no. 161L0242A (M.L. and R.H.). The content of this paper is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. Any use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the US Government. The funders had no role in study design, data collection, analysis, decision to publish or preparation of the manuscript.; http://hdl.handle.net/10138/577347; 85195572484; 001240887500001

الاتاحة: http://hdl.handle.net/10138/577347

المؤلفون: Landshammer, A., Bolondi, A., Kretzmer, H., Much, C., Buschow, R., Rose, A., Wu, H., Mackowiak, S., Braendl, B., Gießelmann, P., Tornisiello, R., Mohan Parsi, K., Huey, J., Mielke, T., Meierhofer, D., Maehr, R., Hnisz, D., Michor, F., Rinn, J., Meissner, A.

المصدر: eLife

وصف الملف: application/pdf

Relation: http://hdl.handle.net/21.11116/0000-000C-9E59-F; http://hdl.handle.net/21.11116/0000-000C-9E5B-D

الاتاحة: http://hdl.handle.net/21.11116/0000-000C-9E59-F
http://hdl.handle.net/21.11116/0000-000C-9E5B-D

المؤلفون: Landshammer, A., Bolondi, A., Kretzmer, H., Much, C., Buschow, R., Rose, A., Wu, H., Mackowiak, S., Braendl, B., Giesselmann, P., Tornisiello, R., Mohan Parsi, K., Huey, J., Mielke, T., Meierhofer, D., Maehr, R., Hnisz, D., Michor, F., Rinn, J., Meissner, A.

المصدر: bioRxiv (Preprint Server)

وصف الملف: application/pdf

Relation: http://hdl.handle.net/21.11116/0000-000D-2D09-8; http://hdl.handle.net/21.11116/0000-000D-2D0B-6

الاتاحة: http://hdl.handle.net/21.11116/0000-000D-2D09-8
http://hdl.handle.net/21.11116/0000-000D-2D0B-6

المؤلفون: Magaletta, M.E., Lobo, M., Kernfeld, E.M., Aliee, H., Huey, J.D., Parsons, T.J., Theis, F.J., Maehr, R.

المصدر: Nat. Commun. 13:457 (2022)

وصف الملف: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/pmid/35075189; info:eu-repo/semantics/altIdentifier/wos/WOS:000747410500002; info:eu-repo/semantics/altIdentifier/isbn/2041-1723; info:eu-repo/semantics; https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=64195; urn:isbn:2041-1723; urn:issn:2041-1723

الاتاحة: https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=64195
https://doi.org/10.1038/s41467-022-28067-4

المؤلفون: Phillips, HM, Stothard, CA, Shaikh Qureshi, WM, Kousa, AI, Briones-Leon, JA, Khasawneh, RR, O'Loughlin, C, Sanders, R, Mazzotta, S, Dodds, R, Seidel, K, Bates, T, Nakatomi, M, Cockell, SJ, Schneider, JE, Mohun, TJ, Maehr, R, Kist, R, Peters, H, Bamforth, SD

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/151763/1/Phillips_Pax9%20interacts%20with%20Tbx1.pdf; Phillips, HM, Stothard, CA, Shaikh Qureshi, WM et al. (17 more authors) (2019) Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis. Development, 146 (18). dev177618. ISSN 0950-1991

الاتاحة: https://eprints.whiterose.ac.uk/151763/
https://eprints.whiterose.ac.uk/151763/1/Phillips_Pax9%20interacts%20with%20Tbx1.pdf

المؤلفون: Fischer, D.S., Fiedler, A., Kernfeld, E.M., Genga, R.M.J., Bastidas-Ponce, A., Bakhti, M., Lickert, H., Hasenauer, J., Maehr, R., Theis, F.J.

المصدر: Nat. Biotechnol. 37, 461-468 (2019)

وصف الملف: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/pmid/30936567; info:eu-repo/semantics/altIdentifier/wos/WOS:000463006000028; info:eu-repo/semantics/altIdentifier/isbn/1087-0156; info:eu-repo/semantics/; https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=55830; urn:isbn:1087-0156; urn:issn:0733-222X; urn:issn:1546-1696

الاتاحة: https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=55830
https://doi.org/10.1038/s41587-019-0088-0

المؤلفون: Fiebiger, E, Maehr, R, Villadangos, J, Weber, E, Erickson, A, Bikoff, E, Ploegh, HL, Lennon-Dumenil, AM

Relation: Fiebiger, E., Maehr, R., Villadangos, J., Weber, E., Erickson, A., Bikoff, E., Ploegh, H. L. & Lennon-Dumenil, A. M. (2002). Invariant chain controls the activity of extracellular cathepsin L. JOURNAL OF EXPERIMENTAL MEDICINE, 196 (9), pp.1263-1269. https://doi.org/10.1084/jem.20020762.; http://hdl.handle.net/11343/264758

الاتاحة: http://hdl.handle.net/11343/264758

المؤلفون: Genga, R., Kernfeld, E., Parsi, K., Parsons, T., Ziller, M., Maehr, R.

المصدر: CELL REPORTS

Relation: http://hdl.handle.net/21.11116/0000-0009-8011-2

الاتاحة: http://hdl.handle.net/21.11116/0000-0009-8011-2

المؤلفون: Dekker J., Belmont A. S., Guttman M., Leshyk V. O., Lis J. T., Lomvardas S., Mirny L. A., O'shea C. C., Park P. J., Ren B., Ritland Politz J. C., Shendure J., Zhong S., van den Berg A., Heckert A. B., Bertero A., Bortnick A., Kukalev A., Moore A., Pombo A., Hansen A. S., Chiariello A., Sali A., Stephens A., Nand A., Valton A. -L., Goloborodko A., He A., van Steensel B., Webb B., Roscoe B., Li B., Chait B., Anthony Blau C., Annunziatella C., Ware C., Wei C. L., Leemans C., Disteche C., Jarjour C., Thieme C., Murry C., Barcia C. T., Trapnell C., Murre C., Peric-Hupkes D., Simon D., Bartlett D., Gao D., Plewczynski D., Gilbert D., Gorkin D., McSwiggen D., Lin D., Aghamirzaie D., Banigan E., Finn E., Sontheimer E., Cadete F. T., Alber F., Mast F., Filippova G., Yardimci G. G., Fudenberg G., Loof G., Bonora G., Pegoraro G., Caglio G., Polles G., Ozadam H., Shin H., Pliner H., Reinecke H., Li H., Tjong H., Fang H., Marie-Nelly H., Belaghzal H., Brandao H., Zhao H., Cisse I., Jung I., Tasan I., Juric I., Owen Andrews J., Schreiber J., Spille J. -H., Zimmerman J., Dixon J., Ma J., Xu J., Sima J., Gibcus J., Nuebler J., Aitchison J., Marko J., Lam J., Bardales Mendieta J. A., Mulia J. C. R., Cayford J., Cook K., Mitzelfelt K., Parsi K. M., Klein K., Brueckner L., Zhang L., Pabon L., Chen L., Carpp L., Yang L., Pei L., Sander M., Imakaev M., Nicodemi M., Schueler M., Falk M., Denholtz M., Libbrecht M., Bolukbasi M. F., Zhen M., Yu M., Rout M., Hu M., Mir M., Armani N., Hua N., Kubo N., Abdennur N., Krietenstein N., Khanna N., Dudko O., Rando O., Luo O., Chaturvedi P., Blainey P., Fields P., Wang P., Li Q., Casellas R., Gudla R., Maehr R., Kempfer R., Beagrie R., Biggs R., Fang R., Qiu R., Genga R. M. J., Srivatsan S., Kumar S., Wolfe S., Shaffer S., Kim S., Shachar S., Bianco S., Jain S., Sasaki T., Isoda T., Misteli T., van Schaik T., Liu T., Hsieh T. -H., Ramani V., Agarwal V., Dileep V., Chandra V., Winick-Ng W., Li W., Noble W., Darzacq X., Zhou X. J., Deng X., Xiong X., Yang X., Yang Y., Zhang Y., Kou Y., Zhou Y., Ruan Y., Chen Y., Wang Y., Qiu Y., Duan Z., Tang Z., Ozer A., Cote A., Tanay A., Chow A., Omer A. D., Raj A., Hwang A., Dudley C., Bartman C., Danko C., Varnai C., Aiden E. L., Blobel G., Lin H., Phillips-Cremins J., Wang J., Ray J., Dunagin M., Arrastia M., Lai M., Curtis M., Kushner M., Pham M., Wang M., Yang M., Durand N. C., Ollikainen N., Munn P., Fraser P., Ismagilov R., Hsu S., Bhardwaj S., Quinodoz S., Nagano T., Amarante T., Zipfel W., Baran Y., Lubling Y., Wang Z., Palla A., Muimbey-Wahula A., Vertii A., Moradian A., Larabell C., Brangwynne C., Lindsay C., Sanders D., Scalzo D., Cannavo E., McDermott G., Ma H., Moresco J., Ritland J., Rinn J., Yates J., Zhu J. L., Roth K., Gerace L., Tait L., Brown L., Zhu L., Kordon M., Groudine M., Gros M. L., Escamilla M., Sweredoski M., Kaufman P., Maas P., Barutcu R., Amin R., Baboo S., Debartolome S. M., Hess S., Pederson T., Szempruch T., Walkup W., Sun X., Shin Y., Senecal A., Hansen A., Barentine A., Spakowitz A., Gustavsson A. -K., Tangara A., Rieger B., Nijmeijer B., Lim B., English B., Barton C., Kenworthy C., Carroll C., Boassa D., Baddeley D., Grunwald D., Birney E., Chuang F., Castillon G., Wang H., Grabmayr H., Chen H., Ou H., Ellenberg J., Liphardt J., Soroczynski J., Biswas J., Yao J., Yin J., Bewersdorf J., Ries J., Bardales J., Roberti J., Zaret K., Chung K., Lam K., Qi L. S., Schmitt L., Barinov L., Tu L. -C., Yang L. -L., Tian L., Cai L., Ellisman M., Mackey M., Haberl M., Huisman M., Clark M., Levo M., Levine M., Walther N., Oedegaard O., Guo P., Zheng Q., Holland Cheng R., Ghosh R., Ramachandra R., Coleman R., Singer R., Liu R., Walden R., Phan S., Quanming S., Ganguly S., Alexander S., Peltier S., Fukaya T., Deerinck T., Gregor T., Fitzgerald T., Moerner W., Li Y., Takei Y., Izumiya Y., Lin Y., Frankenstein Z., Kling C., Rivera C., Zheng H., Rivera K. Z., Hebert L., Rivas-Astroza M., Wu Q., Calandrelli R., Subramaniam S., Chien S., Chen W., Cao X., Yan Z., Balashov A., Schroeder A., Alver B. H., Vitzthum C., Nam C., Li D., Purushotham D., Pehrsson E. C., Yue F., Lekschas F., Pfister H., Strobelt H., Jang H. S., Luber J., Hwang J., Walsh J., Johnson J., Nubler J., Kirli K., Choudhary M. N. K., Gehlenborg N., Kerpedjiev P., Kharchenko P. V., Sears R. L., Lee S., Wang S., Yang T., Hu T. X., Wang T., Hou Y.

المساهمون: Dekker J., Belmont A.S., Guttman M., Leshyk V.O., Lis J.T., Lomvardas S., Mirny L.A., O'shea C.C., Park P.J., Ren B., Ritland Politz J.C., Shendure J., Zhong S., van den Berg A., Heckert A.B., Bertero A., Bortnick A., Kukalev A., Moore A., Pombo A., Hansen A.S., Chiariello A., Sali A., Stephens A., Nand A., Valton A.-L., Goloborodko A., He A., van Steensel B., Webb B., Roscoe B., Li B., Chait B., Anthony Blau C., Annunziatella C., Ware C., Wei C.L., Leemans C., Disteche C., Jarjour C., Thieme C., Murry C., Barcia C.T., Trapnell C., Murre C., Peric-Hupkes D., Simon D., Bartlett D., Gao D., Plewczynski D., Gilbert D., Gorkin D., McSwiggen D., Lin D., Aghamirzaie D., Banigan E., Finn E., Sontheimer E., Cadete F.T., Alber F., Mast F., Filippova G., Yardimci G.G., Fudenberg G., Loof G., Bonora G., Pegoraro G., Caglio G., Polles G., Ozadam H., Shin H., Pliner H., Reinecke H., Li H., Tjong H., Fang H., Marie-Nelly H., Belaghzal H., Brandao H., Zhao H., Cisse I., Jung I., Tasan I., Juric I., Owen Andrews J., Schreiber J., Spille J.-H., Zimmerman J., Dixon J., Ma J., Xu J., Sima J., Gibcus J., Nuebler J., Aitchison J., Marko J., Lam J., Bardales Mendieta J.A., Mulia J.C.R., Cayford J.

Relation: info:eu-repo/semantics/altIdentifier/pmid/29168505; info:eu-repo/semantics/altIdentifier/wos/WOS:000418029500052; volume:552; issue:7684; firstpage:278; lastpage:278; numberofpages:1; journal:NATURE; http://hdl.handle.net/2318/1804583; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85038240951

الاتاحة: http://hdl.handle.net/2318/1804583
https://doi.org/10.1038/nature24667

المؤلفون: Kocks, C, Maehr, R, Overkleeft, H, Wang, E, Iyer, L, Lennon-Dumenil, A, Ploegh, H, Kessler, B

Relation: https://ora.ox.ac.uk/objects/uuid:cb0cc888-319b-4fc8-996c-c0aa51263c93; https://doi.org/10.1074/mcp.M300067-MCP200

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المؤلفون: van Swieten, P, Maehr, R, van den Nieuwendijk, A, Kessler, B, Reich, M, Wong, C, Kalbacher, H, Leeuwenburgh, M, Driessen, C, van der Marel, G, Ploegh, H, Overkleeft, H

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الاتاحة: https://doi.org/10.1016/j.bmcl.2004.04.046
https://ora.ox.ac.uk/objects/uuid:9192229b-bfe2-47fa-b6e6-d7a5c315131f

المؤلفون: Mähr, R.

المصدر: Mähr , R 2005 , ' Proteolysis in the class II MHC-restricted antigen presentation pathway ' , PhD .

الاتاحة: https://research.vu.nl/en/publications/1bcc185e-7907-4e40-8765-56d7973b72b5
https://hdl.handle.net/1871.1/1bcc185e-7907-4e40-8765-56d7973b72b5

المؤلفون: Kearns NA, Genga RMJ, Ziller M, Kapina K, Peters H, Brehm MA, Meissner A, Maehr R

المصدر: Stem Cell Research, 01-11-2013

Relation: https://eprints.ncl.ac.uk/194421

الاتاحة: https://eprints.ncl.ac.uk/194421

المؤلفون: Maehr, R

المصدر: Clinical Pharmacology & Therapeutics ; volume 89, issue 5, page 750-753 ; ISSN 0009-9236 1532-6535

الاتاحة: http://dx.doi.org/10.1038/clpt.2011.1

المؤلفون: Niakan, K. K., Ji, H., Maehr, R., Vokes, S. A., Rodolfa, K. T., Sherwood, Richard Irving, Yamaki, M., Dimos, J. T., Chen, A. E., Melton, Douglas A., McMahon, Andrew P., Eggan, Kevin Carl

مصطلحات موضوعية: differentiation, self-renewal, transcriptional network, primitive endoderm, stem cell, Sox17

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Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2811832/; Genes & Development; Quick submit: 2013-07-10T09:51:47-04:00; Niakan, K. K., H. Ji, R. Maehr, S. A. Vokes, K. T. Rodolfa, Richard I. Sherwood, M. Yamaki, et al. 2010. Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal. Genes & Development 24(3): 312-326.; http://nrs.harvard.edu/urn-3:HUL.InstRepos:11190324

الاتاحة: http://nrs.harvard.edu/urn-3:HUL.InstRepos:11190324
https://doi.org/10.1101/gad.1833510

المؤلفون: Savarese, John J., Lien, Cynthia A., Belmont, Matthew R., Maehr, R. Brandt, Wastila, William B.

المصدر: Muscle Relaxants ; page 335-341 ; ISBN 9784431668985 9784431668961

الاتاحة: http://dx.doi.org/10.1007/978-4-431-66896-1_49
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المؤلفون: Maehr, R, Mintern, JD, Herman, E, Lennon-Dumenil, AM, Mathis, D, Benoist, C, Ploegh, HL

مصطلحات موضوعية: Cellular Immunology, Immune System and Allergy

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الاتاحة: http://hdl.handle.net/11343/26505
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المؤلفون: Lennon-Dumenil, A.M., Bakker, A.H., Maehr, R., Fiebiger, E., Overkleeft, H.S., Rosemblatt, M., Ploegh, H.L., Lagaudriere-Gesbert, C.

المصدر: Journal of Experimental Medicine

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Relation: lucris-id: 6667369; https://hdl.handle.net/1887/74244

الاتاحة: https://hdl.handle.net/1887/74244
https://doi.org/10.1084/jem.20020327

المؤلفون: Phillips HM, Stothard CA, Shaikh Qureshi WM, Kousa AI, BrionesLeon JA, Khasawneh RR, Sanders R, O'Loughlin C, Mazzotta S, Dodds R, Seidel K, Bates T, Nakatomi M, Cockell SJ, Schneider JE, Mohun TJ, Maehr R, Kist R, Peters H, Bamforth SD

المصدر: Development

وصف الملف: application/pdf

Relation: https://eprints.ncl.ac.uk/259620; https://eprints.ncl.ac.uk/fulltext.aspx?url=259620/59EACE9E-EF86-485A-9406-19215AAC8A8E.pdf&pub_id=259620; https://eprints.ncl.ac.uk/fulltext.aspx?url=259620/A95F3EE3-79D7-4E95-8BB0-54FF62FA6FD0.pdf&pub_id=259620

الاتاحة: https://eprints.ncl.ac.uk/259620

المؤلفون: Belmont, Matthew R., Maehr, R. Brandt, Wastila, William B., Savarese, John J.

المصدر: Anesthesiology Clinics of North America ; volume 11, issue 2, page 251-282 ; ISSN 0889-8537

الاتاحة: http://dx.doi.org/10.1016/s0889-8537(21)00781-1
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