المؤلفون: Hank Bass (589028)

مصطلحات موضوعية: Plant Biology, Epigenetics (incl. Genome Methylation and Epigenomics), Genomics, maize, chromatin accessibility profiles, MOA-seq, motif discovery

Relation: https://figshare.com/articles/online_resource/S7_File_PDF_summary_catalog_files_for_the_OLIGO_motifs_found_with_RSAT_under_MOA-seq_footprints_MFs_frenter_peaks_/13012622

الاتاحة: https://doi.org/10.6084/m9.figshare.13012622.v1

المؤلفون: Hank Bass (589028)

مصطلحات موضوعية: Plant Biology, Epigenetics (incl. Genome Methylation and Epigenomics), Genomics, maize, chromatin accessibility profiles, MOA-seq

Relation: https://figshare.com/articles/online_resource/S6_File_PDF_summary_catalog_files_for_the_DYAD_motifs_found_with_RSAT_under_MOA-seq_footprints_MFs_frenter_peaks_/13012616

الاتاحة: https://doi.org/10.6084/m9.figshare.13012616.v1

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/Bigwig_file_of_read-normalized_MOA_coverage_for_B73v3_/15159786

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s009

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/PDF_MOA-seq_bench_protocol_/15159783

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s008

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/Bigwig_file_of_MFs_coverage_for_B73v3_/15159789

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s010

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/PDF_summary_catalog_files_for_the_OLIGO_motifs_found_with_RSAT_under_MOA-seq_footprints_MFs_frenter_peaks_/15159804

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s014

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/MOA_earshoot_MFs_rep2_bigwig_file_for_B73v5_/15159825

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s019

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/MOA_earshoot_COVERAGE_combined_bigwig_file_for_B73v5_/15159819

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s017

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/MOA_earshoot_COVERAGE_rep1_bigwig_file_for_B73v5_/15159813

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s015

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/PDF_summary_catalog_files_for_the_DYAD_motifs_found_with_RSAT_under_MOA-seq_footprints_MFs_frenter_peaks_/15159801

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s013

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/Bigwig_file_of_MOA-seq_normalized_coverage_for_1-2cm_B_sized_earshoots_/15159798

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s012

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/MOA_earshoot_MFs_rep1_bigwig_file_for_B73v5_/15159822

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s018

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/MOA_earshoot_COVERAGE_rep2_bigwig_file_for_B73v5_/15159816

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s016

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/MOA_earshoot_MFs_combined_bigwig_file_for_B73v5_/15159828

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s020

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/B73_MNase_Control_fragment_centers_bigwig_file_for_B73v5_/15159834

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s022

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/B73_MNase_Control_COVERAGE_bigwig_file_for_B73v5_/15159831

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s021

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/RSAT_report_for_75_DYAD_motifs_found_at_MFs_frenters_iSegBC7_peaks_/15159852

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s028

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/Zipped_BED_files_of_iSeg_peaks_bigbed_files_for_MNase_CONTROL_coverage_COV_and_MFs_FRENTERs_on_maize_B73v5_/15159873

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s032

المؤلفون: Savannah D. Savadel (11268888), Thomas Hartwig (166051), Zachary M. Turpin (10153019), Daniel L. Vera (3175611), Pei-Yau Lung (5090393), Xin Sui (211430), Max Blank (11268891), Wolf B. Frommer (111268), Jonathan H. Dennis (8729079), Jinfeng Zhang (22473), Hank W. Bass (268466)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Genetics, Ecology, Cancer, Hematology, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, binding motifs genome-wide, sequence motif families, M Nase-defined cistrome, binding sites, TEOSINTE BRANCHED 1. Importantly, MF, MOA, maize ear Elucidating, ATAC-seq ACRs intersected, FASCIATED, DNA, chromatin interaction sites, MOA-seq, TF-binding sites, KNOTTED, putatively-occupied binding sites, 215 motif families

Relation: https://figshare.com/articles/journal_contribution/RSAT_report_for_140_OLIGO_motifs_found_at_MFs_frenters_iSegBC7_peaks_/15159855

الاتاحة: https://doi.org/10.1371/journal.pgen.1009689.s029

المؤلفون: Hank Bass (589028)

مصطلحات موضوعية: Plant Biology, Epigenetics (incl. Genome Methylation and Epigenomics), Genomics, MOA-seq, maize, chromatin, chromatin accessibility profiles, MNase-seq data

Relation: https://figshare.com/articles/online_resource/S2_File_Bigwig_file_of_read-normalized_MOA_coverage_for_B73v3/13012529

الاتاحة: https://doi.org/10.6084/m9.figshare.13012529.v1