المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/journal_contribution/S1_File_-/14574531

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.s001

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/journal_contribution/S1_Raw_images_-/14574534

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.s002

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Compressed_archives_of_processed_MFRE-Seq_FASTA_files_from_which_motifs_in_Tables_5_and_6_were_derived_/14574540

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.s004

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Compressed_archives_of_processed_MFRE-Seq_FASTA_files_from_which_motifs_in_Tables_5_and_6_were_derived_/14574537

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.s003

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Compressed_archives_of_processed_MFRE-Seq_FASTA_files_from_which_motifs_in_Tables_5_and_6_were_derived_/14574543

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.s005

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Compressed_archives_of_processed_MFRE-Seq_FASTA_files_from_which_motifs_in_Tables_5_and_6_were_derived_/14574546

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.s006

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/figure/MFRE_cleavage_and_formation_of_library_inserts_/14574549

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.g001

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/figure/Overview_of_MFRE-Seq_/14574552

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.g002

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/figure/Diagnostic_statistics_from_Illumina_sequencing_of_FspEI-digested_i_E_i_i_coli_i_K-12_DHB4_/14574561

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.g004

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/figure/Example_of_theoretical_fragment_types_generated_by_MFRE_digestion_/14574558

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.g003

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/figure/Bar_graph_of_random_read_analysis_/14574564

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.g005

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Table_1_-/14574567

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t001

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Flank_length_analysis_of_all_reference-matching_motif-containing_reads_derived_from_Illumina_DHB4_run_/14574573

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t003

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Replicate_experiment_statistics_i_E_i_i_coli_i_DHB4_genomic_DNA_/14574570

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t002

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Flank_length_analysis_of_base-filtered_reference-matching_motif-containing_reads_derived_from_Illumina_DHB4_run_/14574576

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t004

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Motifs_determined_using_the_Illumina_MiSeq_platform_sup_a_sup_/14574582

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t006

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Comparison_of_real_sequence_reads_with_theoretical_digest_fragments_of_i_E_i_i_coli_i_DHB4_sup_a_sup_/14574579

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t005

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Motifs_determined_using_the_Ion_Torrent_platform_sup_a_sup_/14574585

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t007

المؤلفون: Brian P. Anton (422971), Alexey Fomenkov (450750), Victoria Wu (291871), Richard J. Roberts (8946)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, MFRE, library preparation procedures, N 6-methyladenine, MFRE-Seq, bisulfite sequencing, MspJI restriction fragments Single-., methyltransferase, 5- methylcytosine sites, DNA sequences, prokaryotic 5- methylcytosine methy., 5- methylcytosine, Ion Torrent sequencing platforms, prokaryotic methylomes, sequence contexts, method, archaeal genomic DNA preparations, Genome-wide identification

Relation: https://figshare.com/articles/dataset/Read_data_for_M_AvaVIII_sup_a_sup_/14574588

الاتاحة: https://doi.org/10.1371/journal.pone.0247541.t008