المؤلفون: Christina B. Azodi, Luke Zappia, Alicia Oshlack, Davis J. McCarthy

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-16 (2021)

مصطلحات موضوعية: Single-cell RNA-sequencing, Simulation, Software, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/f967b00b2e7e43a18172628e469a5e6f

المؤلفون: Luke Zappia, Fabian J. Theis

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-18 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/f5ca1e7ff8744bfbb069bcd39ac4e09a

المؤلفون: David S. Fischer, Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos, Sophie Tritschler, Olle Holmberg, Hananeh Aliee, Fabian J. Theis

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-21 (2021)

مصطلحات موضوعية: Single-cell genomics, Data zoo, Model zoo, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/42d3581d43904bdf861e73681f736824

المؤلفون: Shanika L. Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E. Ritchie, Quentin Gouil

المصدر: Genome Biology, Vol 21, Iss 1, Pp 1-16 (2020)

مصطلحات موضوعية: Long-read sequencing, Data analysis, PacBio, Oxford Nanopore, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/79ac667da73342cfbc0213536936419d

المؤلفون: Michael G. Leeming, Andrew P. Isaac, Luke Zappia, Richard A.J. O’Hair, William A. Donald, Bernard J. Pope

المصدر: SoftwareX, Vol 12, Iss , Pp 100559- (2020)

مصطلحات موضوعية: Liquid chromatography-mass spectrometry, Twin ions, Metabolites, Computer software, QA76.75-76.765

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352711019303796; https://doaj.org/toc/2352-7110

URL الوصول: https://doaj.org/article/9d262ac641b94230a8142455002a4fc9

المؤلفون: Alexander N. Combes, Luke Zappia, Pei Xuan Er, Alicia Oshlack, Melissa H. Little

المصدر: Genome Medicine, Vol 11, Iss 1, Pp 1-15 (2019)

مصطلحات موضوعية: Single-cell RNA sequencing, Human kidney organoids, Stem cell-derived models, Induced pluripotent cells, Organoids, Medicine, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s13073-019-0615-0; https://doaj.org/toc/1756-994X

URL الوصول: https://doaj.org/article/6ade7031b0f441068b1deadddbdacf8f

المؤلفون: Luke Zappia, Belinda Phipson, Alicia Oshlack

المصدر: Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)

مصطلحات موضوعية: Single-cell, RNA-seq, Simulation, Software, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-017-1305-0; https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/5d422a36cad040bead5549d96c85a0e2

المؤلفون: Kynan T Lawlor, Luke Zappia, James Lefevre, Joo-Seop Park, Nicholas A Hamilton, Alicia Oshlack, Melissa H Little, Alexander N Combes

المصدر: eLife, Vol 8 (2019)

مصطلحات موضوعية: kidney development, nephron progenitor, cell migration, single cell transcriptional profiling, Wnt4, stochastic induction, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/41156; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/346dcaa82adf4a93883b05f34c9ad703

المؤلفون: Luke Zappia, Belinda Phipson, Alicia Oshlack

المصدر: PLoS Computational Biology, Vol 14, Iss 6, p e1006245 (2018)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/3140af411481403cafe5e23596ab7fc9

المؤلفون: Belinda Phipson, Luke Zappia, Alicia Oshlack

المصدر: F1000Research, Vol 6 (2017)

مصطلحات موضوعية: Bioinformatics, Genomics, Methods for Diagnostic & Therapeutic Studies, Medicine, Science

وصف الملف: electronic resource

Relation: https://f1000research.com/articles/6-595/v1; https://doaj.org/toc/2046-1402

URL الوصول: https://doaj.org/article/4134471d22ac4476b762f880a5fbcd36

المؤلفون: Luke Zappia, Sabrina Richter, Ciro Ramírez-Suástegui, Weixu Wang, Oliver Dietrich, Amit Frishberg, Malte D. Luecken, Fabian J. Theis

مصطلحات موضوعية: Bioinformatics, Computational Biology, Single Cell, RNA sequencing, Feature Selection Methods

Relation: https://figshare.com/articles/journal_contribution/Feature_selection_methods_affect_the_performance_of_scRNA-seq_data_integration_and_querying_Registered_Reports_Stage_1_manuscript_/24995690

الاتاحة: https://doi.org/10.6084/m9.figshare.24995690.v1
https://figshare.com/articles/journal_contribution/Feature_selection_methods_affect_the_performance_of_scRNA-seq_data_integration_and_querying_Registered_Reports_Stage_1_manuscript_/24995690

المؤلفون: David S. Fischer (11333076), Leander Dony (11333079), Martin König (5122742), Abdul Moeed (11333082), Luke Zappia (4431637), Lukas Heumos (7526012), Sophie Tritschler (11333085), Olle Holmberg (11333088), Hananeh Aliee (11333091), Fabian J. Theis (11333094)

مصطلحات موضوعية: Genetics, Immunology, Cancer, Inorganic Chemistry, Science Policy, Hematology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Single-cell genomics, Data zoo, Model zoo

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_Sfaira_accelerates_data_and_model_reuse_in_single_cell_genomics/16442079

الاتاحة: https://doi.org/10.6084/m9.figshare.16442079.v1

المؤلفون: David S. Fischer (11333076), Leander Dony (11333079), Martin König (5122742), Abdul Moeed (11333082), Luke Zappia (4431637), Lukas Heumos (7526012), Sophie Tritschler (11333085), Olle Holmberg (11333088), Hananeh Aliee (11333091), Fabian J. Theis (11333094)

مصطلحات موضوعية: Genetics, Immunology, Cancer, Inorganic Chemistry, Science Policy, Hematology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Single-cell genomics, Data zoo, Model zoo

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Sfaira_accelerates_data_and_model_reuse_in_single_cell_genomics/16442082

الاتاحة: https://doi.org/10.6084/m9.figshare.16442082.v1

المؤلفون: Luke Zappia (4431637), Fabian J. Theis (11333094)

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Developmental Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, integrating multiple samples, database passing 1000, cataloged software tools, tools database, since 2016, ordering cells, making use, increased recognition, help accelerate, data shows, continuous trajectories, cell rna, analysis methods, also find

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Over_1000_tools_reveal_trends_in_the_single-cell_RNA-seq_analysis_landscape/16907372

الاتاحة: https://doi.org/10.6084/m9.figshare.16907372.v1

المؤلفون: Luke Zappia (4431637), Fabian J. Theis (11333094)

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Developmental Biology, Cancer, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, integrating multiple samples, database passing 1000, cataloged software tools, tools database, since 2016, ordering cells, making use, increased recognition, help accelerate, data shows, continuous trajectories, cell rna, analysis methods, also find

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_Over_1000_tools_reveal_trends_in_the_single-cell_RNA-seq_analysis_landscape/16907369

الاتاحة: https://doi.org/10.6084/m9.figshare.16907369.v1

المؤلفون: Christina B. Azodi (11023476), Luke Zappia (4431637), Alicia Oshlack (25139), Davis J. McCarthy (10670344)

مصطلحات موضوعية: Genetics, Single-cell RNA-sequencing, Simulation, Software

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_splatPop_simulating_population_scale_single-cell_RNA_sequencing_data/17210484

الاتاحة: https://doi.org/10.6084/m9.figshare.17210484.v1

المؤلفون: Christina B. Azodi (11023476), Luke Zappia (4431637), Alicia Oshlack (25139), Davis J. McCarthy (10670344)

مصطلحات موضوعية: Genetics, Single-cell RNA-sequencing, Simulation, Software

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_splatPop_simulating_population_scale_single-cell_RNA_sequencing_data/17210481

الاتاحة: https://doi.org/10.6084/m9.figshare.17210481.v1

المؤلفون: Luke Zappia, Nitesh Turaga, jwokaty, Robrecht Cannoodt, Christina Del Azodi, Hervé Pagès, Wenjie Wang, evanbiederstedt, Marcel Ramos Pérez, Valerie Obenchain, Allen Zhang, Dayne Filer, MD, PhD, Jeffrey Pullin, Wouter Saelens, lshep

Relation: https://github.com/Oshlack/splatter/tree/v1.30.0; https://doi.org/10.5281/zenodo.833573; https://doi.org/10.5281/zenodo.14198898; oai:zenodo.org:14198898

الاتاحة: https://doi.org/10.5281/zenodo.14198898

المؤلفون: Harshil Patel, Phil Ewels, Jonathan Manning, Maxime U Garcia, Alexander Peltzer, Rickard Hammarén, Olga Botvinnik, Adam Talbot, Gregor Sturm, nf-core bot, Matthias Zepper, Denis Moreno, Pranathi Vemuri, Mahesh Binzer-Panchal, Ezra Greenberg, silviamorins, Lorena Pantano, Robert Syme, Gavin Kelly, Friederike Hanssen, James A. Fellows Yates, Jose Espinosa-Carrasco, rfenouil, Luke Zappia, Chris Cheshire, Edmund Miller, marchoeppner, Peng Zhou, Sarah Guinchard, Gisela Gabernet

Relation: https://github.com/nf-core/rnaseq/tree/3.17.0; https://doi.org/10.5281/zenodo.1400710; https://doi.org/10.5281/zenodo.13986791; oai:zenodo.org:13986791

الاتاحة: https://doi.org/10.5281/zenodo.13986791

المؤلفون: Harshil Patel, Phil Ewels, Jonathan Manning, Maxime U Garcia, Alexander Peltzer, Rickard Hammarén, Olga Botvinnik, Adam Talbot, Gregor Sturm, nf-core bot, Matthias Zepper, Denis Moreno, Pranathi Vemuri, Mahesh Binzer-Panchal, Ezra Greenberg, silviamorins, Lorena Pantano, Robert Syme, Gavin Kelly, Friederike Hanssen, James A. Fellows Yates, Jose Espinosa-Carrasco, rfenouil, Luke Zappia, Chris Cheshire, Edmund Miller, marchoeppner, Peng Zhou, Sarah Guinchard, Gisela Gabernet

Relation: https://github.com/nf-core/rnaseq/tree/3.16.1; https://doi.org/10.5281/zenodo.1400710; https://doi.org/10.5281/zenodo.13940293; oai:zenodo.org:13940293

الاتاحة: https://doi.org/10.5281/zenodo.13940293