المؤلفون: Marianne Bachmann Salvy, Luca Santuari, Emanuel Schmid-Siegert, Nikolaos Lykoskoufis, Ioannis Xenarios, Bulak Arpat

المصدر: mAbs, Vol 16, Iss 1 (2024)

مصطلحات موضوعية: Antibody discovery, long-read sequencing, PacBio, phage display, scFvs, Therapeutics. Pharmacology, RM1-950, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1942-0862; https://doaj.org/toc/1942-0870

URL الوصول: https://doaj.org/article/f85acb18d6bb4dca8286f8f0fd6b6991

المؤلفون: Luca Santuari, Marianne Bachmann Salvy, Ioannis Xenarios, Bulak Arpat

المصدر: Frontiers in Drug Discovery, Vol 4 (2024)

مصطلحات موضوعية: LLM, ALM (antibody language model), developability, inverse folding, deep learning, artificial intelligence, Therapeutics. Pharmacology, RM1-950

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fddsv.2024.1447867/full; https://doaj.org/toc/2674-0338

URL الوصول: https://doaj.org/article/a0b6669d453d4d6fb2f9ee963c3a01ee

المؤلفون: Ghazanfar Abbas Khan, Jules Deforges, Rodrigo S Reis, Yi-Fang Hsieh, Jonatan Montpetit, Wojciech Antosz, Luca Santuari, Christian S Hardtke, Klaus D Grasser, Yves Poirier

المصدر: PLoS Genetics, Vol 16, Iss 4, p e1008732 (2020)

مصطلحات موضوعية: Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

URL الوصول: https://doaj.org/article/de9b24e55b2f43aeb703628591f84efa

المؤلفون: Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard P. Kloosterman, Jeroen de Ridder

المصدر: PeerJ, Vol 8, p e8214 (2020)

مصطلحات موضوعية: Scientific workflow, Cancer genomics, Variant calling, Structural variants, High-performance computing, Cloud computing, Medicine, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://peerj.com/articles/8214.pdf; https://peerj.com/articles/8214/; https://doaj.org/toc/2167-8359

URL الوصول: https://doaj.org/article/be0b73b1c8184320a840c760a5771949

المؤلفون: Eavan Dorcey, Antia Rodriguez-Villalon, Paula Salinas, Luca Santuari, Sylvain Pradervand, Keith Harshman, Christian S Hardtke

المصدر: PLoS Genetics, Vol 8, Iss 4, p e1002652 (2012)

مصطلحات موضوعية: Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC3325215?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

URL الوصول: https://doaj.org/article/ea3d453543e24848a012c83a0f009716

المؤلفون: Ghazanfar Abbas Khan, Jules Deforges, Rodrigo S Reis, Yi-Fang Hsieh, Jonatan Montpetit, Wojciech Antosz, Luca Santuari, Christian S Hardtke, Klaus D Grasser, Yves Poirier

مصطلحات موضوعية: Uncategorized, Science & Technology, Life Sciences & Biomedicine, Genetics & Heredity, MESSENGER-RNA EXPORT, SMALL INTERFERING RNA, PHOSPHATE HOMEOSTASIS, GENE-EXPRESSION, PHO1, POLYADENYLATION, DEFICIENCY, REVEALS, DEGRADATION, POLYMERASE, Arabidopsis, Amino Acid Oxidoreductases, Arabidopsis Proteins, Gene Expression Regulation, Plant, Transcription Termination, Genetic, Developmental Biology

Relation: https://figshare.com/articles/journal_contribution/The_transcription_and_export_complex_THO_TREX_contributes_to_transcription_termination_in_plants/13670602

الاتاحة: https://doi.org/10.26181/60175a4b57bf5
https://figshare.com/articles/journal_contribution/The_transcription_and_export_complex_THO_TREX_contributes_to_transcription_termination_in_plants/13670602

المؤلفون: Jasmin K. Böhmer, Luca Santuari, Arnold Kuzniar

المساهمون: Jeroen de Ridder, Lars Ridder, Jaap van Minnen, Rena Bakhshi, Aletta Debernardi, Daphne van Beek, Ymke van den Berg, Maarten Kooyman, Coen Schrijvers

مصطلحات موضوعية: Data Processing Agreement, DPA, Data Management, Use Case, Supercomputer, Patient Data, Data Analysis, WGS, Whole Genome Sequencing, GDPR, SV caller, Cancer Research, machine learning, ML, deep learning, DL

Relation: https://www.research-software.nl/software/sv-callers; https://peerj.com/articles/8214/; https://zenodo.org/communities/nlesc; https://doi.org/10.5281/zenodo.4075236; https://doi.org/10.5281/zenodo.4075237; oai:zenodo.org:4075237

الاتاحة: https://doi.org/10.5281/zenodo.4075237

المؤلفون: Yves Poirier, Klaus D. Grasser, Jules Deforges, Luca Santuari, Rodrigo S. Reis, Ghazanfar Abbas Khan, Yi-Fang Hsieh, Wojciech Antosz, Christian S. Hardtke, Jonatan Montpetit

المصدر: PLoS Genetics
PLoS genetics, vol. 16, no. 4, pp. e1008732
PLoS Genetics, Vol 16, Iss 4, p e1008732 (2020)

مصطلحات موضوعية: Cancer Research, Small interfering RNA, Polyadenylation, Molecular biology, Arabidopsis, Gene Expression, Plant Science, QH426-470, Biochemistry, Amino Acid Oxidoreductases/genetics, Amino Acid Oxidoreductases/metabolism, Arabidopsis/genetics, Arabidopsis/metabolism, Arabidopsis Proteins/genetics, Arabidopsis Proteins/metabolism, Gene Expression Regulation, Plant, Transcription Termination, Genetic, Exon, 0302 clinical medicine, Sequencing techniques, Transcription (biology), Gene expression, Transcriptional Termination, Genetics (clinical), Uncategorized, Plant Growth and Development, 0303 health sciences, Messenger RNA, Eukaryota, RNA sequencing, Plants, Cell biology, Nucleic acids, Phenotypes, Terminator (genetics), Experimental Organism Systems, RNA splicing, Amino Acid Oxidoreductases, Research Article, Arabidopsis Thaliana, DNA transcription, Brassica, Biology, Research and Analysis Methods, 03 medical and health sciences, Model Organisms, Plant and Algal Models, Genetics, Gene Regulation, Gene, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, Biology and life sciences, Three prime untranslated region, Arabidopsis Proteins, Organisms, RNA, Molecular biology techniques, Animal Studies, Shoot Growth, 030217 neurology & neurosurgery, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b807ab1b9a228d67da8a8af279575011
https://doi.org/10.1101/2020.03.02.972356

المؤلفون: Luca Santuari, Christian S Hardtke

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/4c/a6/F1000_Biol_Rep_2010_Dec_8_2_85.tar.gz

وصف الملف: application/zip

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.294.452

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.294.452

المؤلفون: Arnold Kuzniar, Jason Maassen, Luca Santuari, Carl Shneider, Jeroen de Ridder, Wigard P. Kloosterman, Stefan Verhoeven

المصدر: eScience

مصطلحات موضوعية: 0301 basic medicine, Whole genome sequencing, Computer science, YAML, Genomics, Computational biology, computer.file_format, Genome, DNA sequencing, 03 medical and health sciences, 030104 developmental biology, Workflow, Scalability, computer, Reference genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::33f8a73128b8cc8cb2c6dcf8e30f8855
https://ir.cwi.nl/pub/29413

المؤلفون: M. Eric Schranz, Luuk Rutten, Rimi Repin, J.G.J. Hontelez, Elio Schijlen, Wei Liu, Defeng Shen, Robin van Velzen, Kana Miyata, Luca Santuari, Fengjiao Bu, Arjan van Zeijl, Sandra Smit, Trupti Sharma, Renze Heidstra, Rens Holmer, Yuda Purwana Roswanjaya, Titis A. K. Wardhani, Wouter Kohlen, J. Verver, René Geurts, Menno Schilthuizen, Marijke Hartog, Qingqin Cao, Ton Bisseling, Berivan Gungor, Joelle Jansen, Wei-Cai Yang, Johan van den Hoogen, Maryam Seifi Kalhor, Elena Fedorova

المصدر: Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America 115 (2018) 20
Proceedings of the National Academy of Sciences of the United States of America, 115(20), E4700-E4709

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Frankia, Plant Developmental Biology, Plant Biology, Sequence Homology, comparative genomics, Plant Root Nodulation, 01 natural sciences, Nod factor, Phylogeny, Plant Proteins, Genetics, Multidisciplinary, biology, copy number variation, food and beverages, Fabaceae, Genomics, Biological Sciences, Biological Evolution, Biosystematiek, symbiosis, Medicago truncatula, Phenotype, PNAS Plus, Nitrogen fixation, Rhizobium, Laboratory of Molecular Biology, Root Nodules, Plant, Bioinformatics, Evolution, Nitrogen, Rhizobia, BIOS Applied Bioinformatics, 03 medical and health sciences, Symbiosis, Nitrogen Fixation, Bioinformatica, evolution, Laboratorium voor Moleculaire Biologie, Amino Acid Sequence, Comparative genomics, Copy number variation, fungi, Biological nitrogen fixation, biological nitrogen fixation, 15. Life on land, biology.organism_classification, Laboratorium voor Phytopathologie, 030104 developmental biology, Laboratory of Phytopathology, Biosystematics, EPS, 010606 plant biology & botany

وصف الملف: application/pdf; application/octet-stream

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f03136c9a702ec73257e365a026b10f8
https://doi.org/10.1073/pnas.1721395115

المؤلفون: Rimi Repin, M. Seifi Kalhor, Rens Holmer, Elio Schijlen, Luca Santuari, A.H.J. Bisseling, Fengjiao Bu, Elena Fedorova, René Geurts, J.W.G. Verver, Liu W, A.L. van Zeijl, Berivan Gungor, Sandra Smit, Defeng Shen, Marijke Hartog, Yuda Purwana Roswanjaya, D.J. van den Hoogen, R. van Velzen, L.J.J. Rutten, Titis A. K. Wardhani, Wouter Kohlen, Trupti Sharma, Renze Heidstra, Menno Schilthuizen, J. Hontelez, Kana Miyata, Joelle Jansen, Wei-Cai Yang, M.E. Schranz, Qingqin Cao

مصطلحات موضوعية: Genetics, Symbiosis, Frankia, Botany, Nitrogen fixation, Rhizobium, Rosales, Biology, biology.organism_classification, Gene, Genome, Legume

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b877c506ec2250cf62ae0e833398fae0

المؤلفون: John K. McKay, Christian S. Hardtke, James H. Richards, Luca Santuari, Thomas E. Juenger, Saunak Sen, Leah J. DeRose-Wilson, David B. Lowry, Tierney L. Logan

المصدر: The Plant Cell. 25:3266-3279

مصطلحات موضوعية: Quantitative Trait Loci, Population, Arabidopsis, Gene Expression, Genomics, Plant Science, Environment, Biology, Genome, Gene Expression Regulation, Plant, Stress, Physiological, Gene density, Genetic variation, Promoter Regions, Genetic, education, Gene, Genetic Association Studies, Research Articles, Genetics, Regulation of gene expression, education.field_of_study, Chromosome Mapping, Genetic Variation, Water, Cell Biology, Droughts, Phenotype, Expression quantitative trait loci, Genome, Plant

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be0e11eeb79c2c72e693dee3242dbf39
https://doi.org/10.1105/tpc.113.115352

المؤلفون: Hirokazu Tanaka, Yuki Matsuura, Christian S. Hardtke, Tatsuo Kakimoto, Maciek Adamowski, Hirotaka Kouno, Luca Santuari, Saeko Kitakura, Jiří Friml, Kohei Arima

المصدر: Plant and Cell Physiology 58 (2017) 10
Plant and Cell Physiology, 58(10), 1801-1811

مصطلحات موضوعية: 0301 basic medicine, Auxin efflux, ADP ribosylation factor, Physiology, Endosome, Green Fluorescent Proteins, Endocytic cycle, Arabidopsis, Plant Developmental Biology, Endosomes, Plant Science, ARF GEF, Biology, environment and public health, 03 medical and health sciences, symbols.namesake, chemistry.chemical_compound, PIN-FORMED1, Guanine Nucleotide Exchange Factors, Auxin, Cloning, Molecular, Alleles, Brefeldin A, ADP-Ribosylation Factors, Arabidopsis Proteins, Cell Membrane, Cell Biology, General Medicine, Golgi apparatus, Cell Compartmentation, Cell biology, Protein Transport, Phenotype, 030104 developmental biology, Trans-Golgi network, Membrane protein, chemistry, Codon, Nonsense, Seedlings, symbols, Guanine nucleotide exchange factor, EPS, trans-Golgi Network

وصف الملف: application/pdf; application/octet-stream

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d5e321967c1c9b2013775bdc74b7b8b2
https://research.wur.nl/en/publications/ben3big2-arf-gef-is-involved-in-brefeldin-a-sensitive-trafficking

المؤلفون: Christian S. Hardtke, Luca Santuari, Naden T. Krogan, Thomas Berleth, Emanuele Scacchi, Paula Salinas, Laura Ragni, Bojan Gujas

المصدر: Proceedings of the National Academy of Sciences of the United States of America

مصطلحات موضوعية: 0106 biological sciences, Auxin efflux, Cytokinins, Time Factors, Cellular differentiation, Blotting, Western, Green Fluorescent Proteins, Meristem, Arabidopsis, Meristem growth, 01 natural sciences, Plant Roots, 03 medical and health sciences, Plant Growth Regulators, Auxin, Gene Expression Regulation, Plant, 030304 developmental biology, Glucuronidase, Genetics, chemistry.chemical_classification, 0303 health sciences, Multidisciplinary, Microscopy, Confocal, biology, Indoleacetic Acids, Arabidopsis Proteins, Reverse Transcriptase Polymerase Chain Reaction, fungi, Root meristem growth, Gene Expression Regulation, Developmental, Nuclear Proteins, food and beverages, Biological Sciences, biology.organism_classification, Plants, Genetically Modified, Cell biology, DNA-Binding Proteins, chemistry, Mutation, Developmental biology, 010606 plant biology & botany, Transcription Factors

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47b257a1e869c7825a1eb70bd8a561b2

المؤلفون: Ben Scheres, Kenzo Nakamura, Gabino F. Sanchez-Perez, Renze Heidstra, Lidija Berke, Luca Santuari, Dongping Bao, Berend Snel, Inez Terpstra, Kenichiro Maeo, Maartje Gorte, Ari Pekka Mähönen, Ondřej Novák, Dick de Ridder, Edwin Cuppen, Akie Shimotohno, Marijn Luijten, Bas Rutjens, Wolfgang Lukowitz, Karin Ljung, Viola Willemsen, Ales Pencik, Ewart de Bruijn, Sebastiaan van Heesch, Kalika Prasad, Johanna L.P.M. Timmermans-Hereijgers

المساهمون: Sub Bioinformatics, Theoretical Biology and Bioinformatics

المصدر: The Plant Cell, 28(12), 2937-2951
The Plant Cell, 28(12), 2937. American Society of Plant Biologists
The Plant Cell 28 (2016) 12
Plant Cell, 28(12), 2937. American Society of Plant Biologists

مصطلحات موضوعية: 0301 basic medicine, congenital, hereditary, and neonatal diseases and abnormalities, Bioinformatics, Cellular differentiation, Cell, Gene regulatory network, Arabidopsis, Plant Developmental Biology, Plant Science, Biology, Plant Roots, 03 medical and health sciences, BIOS Applied Bioinformatics, Gene Expression Regulation, Plant, Bioinformatica, medicine, Journal Article, Life Science, Gene Regulatory Networks, Transcription factor, Research Articles, Regulation of gene expression, Cell growth, Arabidopsis Proteins, Cell Differentiation, Cell Biology, biology.organism_classification, humanities, Biosystematiek, Cell biology, 030104 developmental biology, medicine.anatomical_structure, Biosystematics, Stem cell, EPS, Transcription Factors

وصف الملف: application/octet-stream; image/pdf; application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::50da2995b96e1bab4722076aaa428232
https://research.wur.nl/en/publications/the-plethora-gene-regulatory-network-guides-growth-and-cell-diffe

المؤلفون: Miguel González-Guzmán, Amelia Amiguet-Vercher, Luca Santuari, Pedro L. Rodriguez, Stephen Depuydt, Christian S. Hardtke

المصدر: The New phytologist
RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
instname

مصطلحات موضوعية: 0106 biological sciences, Nonsynonymous substitution, Arabidopsis thaliana, Physiology, Phosphatase, Population, Quantitative Trait Loci, Arabidopsis, IBO, Germination, Plant Science, Quantitative trait locus, Biology, 01 natural sciences, 03 medical and health sciences, chemistry.chemical_compound, Gene Expression Regulation, Plant, Genetic variation, BIOQUIMICA Y BIOLOGIA MOLECULAR, Phosphoprotein Phosphatases, Quantitative trait locus (QTL), Amino Acid Sequence, Amino Acids, education, Abscisic acid, 030304 developmental biology, Genetics, 0303 health sciences, education.field_of_study, Arabidopsis Proteins, Seed dormancy, MICROBIOLOGIA, Abscisic acid (ABA), Phosphatase 2C (PP2C), Plant Dormancy, Adaptation, Physiological, Protein Phosphatase 2C, chemistry, Biochemistry, Seeds, Natural variation, 010606 plant biology & botany, Abscisic Acid, Signal Transduction

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::337f90935b578a7ceb58b2ba72f2a7a1
https://pubmed.ncbi.nlm.nih.gov/25490966

المؤلفون: Edward E. Farmer, Luca Santuari, Aurore Chételat, Debora Gasperini, Stéphanie Stolz, Ivan F. Acosta

مصطلحات موضوعية: food.ingredient, Mutant, Arabidopsis, Repressor, Flowers, Real-Time Polymerase Chain Reaction, Plant Roots, food, Arabidopsis thaliana, Jasmonate, Transcription factor, DNA Primers, Analysis of Variance, Multidisciplinary, biology, Arabidopsis Proteins, Gene Expression Profiling, food and beverages, High-Throughput Nucleotide Sequencing, Nuclear Proteins, Biological Sciences, biology.organism_classification, Molecular biology, Repressor Proteins, Gene Components, Seedlings, Signal transduction, Cotyledon, Signal Transduction

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::efe3e096431465d78737e887241b7e46
https://europepmc.org/articles/PMC3780868/

المؤلفون: Paula Salinas, Teva Vernoux, Esther M. N. Dohmann, Emanuele Scacchi, Luca Santuari, Géraldine Brunoud, Antia Rodriguez-Villalon, Christian S. Hardtke, Richard S. Smith

المساهمون: Department of Plant Molecular Biology, Université de Lausanne (UNIL), Reproduction et développement des plantes (RDP), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Délégation à l'évaluation, Institut National de la Recherche Agronomique (INRA), Institute of Plant Sciences, University of Bern, We would like to thank the Swiss Institute of Bioinformatics and the Lausanne Cellular Imaging Facility for technical support. This work was supported by Swiss National Science Foundation grant 31003A_129783 (C.S.H.), the SystemsX 'Plant Growth in a Changing Environment' network (C.S.H. and R.S.S.), the BRAVISSIMO Marie Curie Initial Training Network (E.S.), and European Molecular Biology Organization long-term postdoctoral fellowships (A.R.-V. and E.M.N.D.)., Université de Lausanne = University of Lausanne (UNIL), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL)

المصدر: Current Biology-CB
Current Biology-CB, Elsevier, 2011, 21 (22), pp.1918-1923. ⟨10.1016/j.cub.2011.10.002⟩
Current biology : CB
Current Biology-CB, 2011, 21 (22), pp.1918-1923. ⟨10.1016/j.cub.2011.10.002⟩

مصطلحات موضوعية: 0106 biological sciences, biochemistry and molecular biology, arabidopsis proteins, [SDV]Life Sciences [q-bio], Arabidopsis, Regulator, Meristem growth, Endocytosis, Models, Biological, Plant Roots, 01 natural sciences, meristem, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, Gene Expression Regulation, Plant, Auxin, Botany, plant growth regulators, cell biology, endocytosis, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, Computer Simulation, heterocyclic compounds, 030304 developmental biology, Cell Nucleus, chemistry.chemical_classification, 0303 health sciences, Agricultural and Biological Sciences(all), biology, Biochemistry, Genetics and Molecular Biology(all), Cell Membrane, fungi, Root meristem growth, food and beverages, Meristem, biology.organism_classification, Cell biology, chemistry, Polar auxin transport, General Agricultural and Biological Sciences, indoleacetic acids, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4486dfae15d0d68cd284ed0c7c968ab9
https://hal.inrae.fr/hal-02644248

المؤلفون: Christian S. Hardtke, Luca Santuari

المصدر: F1000 Biology Reports

مصطلحات موضوعية: biology, Evolutionary biology, business.industry, Genetic variation, Arabidopsis thaliana, Review Article, Plant biology, biology.organism_classification, business, Gene, Genome, Genome variation, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f9ce610254cf0598188cd8b87087310
https://doi.org/10.3410/b2-85