المؤلفون: L. B. Almeida, Bilena, M. Bahrudeen, Mohamed N., Chauhan, Vatsala, Dash, Suchintak, Kandavalli, Vinodh, Hakkinen, Antti, Lloyd-Price, Jason, S. D. Cristina, Palma, Baptista, Ines S. C., Gupta, Abhishekh, Kesseli, Juha, Dufour, Eric, Smolander, Olli-Pekka, Nykter, Matti, Auvinen, Petri, Jacobs, Howard T., M. D. Oliveira, Samuel, S. Ribeiro, Andre

المصدر: Nucleic Acids Research. 50(12):6801-6819

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-485882
https://doi.org/10.1093/nar/gkac540
https://uu.diva-portal.org/smash/get/diva2:1699853/FULLTEXT01.pdf

المؤلفون: Quinn, Robert A, Melnik, Alexey V, Vrbanac, Alison, Fu, Ting, Patras, Kathryn A, Christy, Mitchell P, Bodai, Zsolt, Belda-Ferre, Pedro, Tripathi, Anupriya, Chung, Lawton K, Downes, Michael, Welch, Ryan D, Quinn, Melissa, Humphrey, Greg, Panitchpakdi, Morgan, Weldon, Kelly C, Aksenov, Alexander, da Silva, Ricardo, Avila-Pacheco, Julian, Clish, Clary, Bae, Sena, Mallick, Himel, Franzosa, Eric A, Lloyd-Price, Jason, Bussell, Robert, Thron, Taren, Nelson, Andrew T, Wang, Mingxun, Leszczynski, Eric, Vargas, Fernando, Gauglitz, Julia M, Meehan, Michael J, Gentry, Emily, Arthur, Timothy D, Komor, Alexis C, Poulsen, Orit, Boland, Brigid S, Chang, John T, Sandborn, William J, Lim, Meerana, Garg, Neha, Lumeng, Julie C, Xavier, Ramnik J, Kazmierczak, Barbara I, Jain, Ruchi, Egan, Marie, Rhee, Kyung E, Ferguson, David, Raffatellu, Manuela, Vlamakis, Hera, Haddad, Gabriel G, Siegel, Dionicio, Huttenhower, Curtis, Mazmanian, Sarkis K, Evans, Ronald M, Nizet, Victor, Knight, Rob, Dorrestein, Pieter C

المصدر: Nature. 579(7797)

مصطلحات موضوعية: Biological Sciences, Biomedical and Clinical Sciences, Chemical Sciences, Microbiology, Medical Biochemistry and Metabolomics, Liver Disease, Digestive Diseases, Microbiome, 2.1 Biological and endogenous factors, Oral and gastrointestinal, Animals, Bile Acids and Salts, Cholic Acid, Cystic Fibrosis, Germ-Free Life, Humans, Inflammatory Bowel Diseases, Metabolomics, Mice, Microbiota, Receptors, Cytoplasmic and Nuclear, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2hq1c13c
https://escholarship.org/content/qt2hq1c13c/qt2hq1c13c.pdf

المؤلفون: Thingholm, Louise, Rühlemann, Malte, Koch, Manja, Fuqua, Brie, Laucke, Guido, Boehm, Ruwen, Bang, Corinna, Franzosa, Eric, Hübenthal, Matthias, Rahnavard, Ali, Frost, Fabian, Lloyd-Price, Jason, Schirmer, Melanie, Lusis, Aldons, Vulpe, Chris, Lerch, Markus, Homuth, Georg, Kacprowski, Tim, Schmidt, Carsten, Nöthlings, Ute, Karlsen, Tom, Lieb, Wolfgang, Laudes, Matthias, Franke, Andre, Huttenhower, Curtis

المصدر: Cell Host & Microbe. 26(2)

مصطلحات موضوعية: dietary supplements, iron, magnesium, medication, metabolic disease, microbiome, nutrition, obesity, type 2 diabetes, Animals, Bacteria, Biodiversity, Diabetes Mellitus, Type 2, Diet, Dietary Supplements, Feces, Female, Gastrointestinal Microbiome, Germany, Humans, Iron, Magnesium, Male, Metabolic Diseases, Metagenomics, Mice, Mice, Inbred C57BL, Multivariate Analysis, Nutrition Assessment, Obesity, Serum

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0b58s22n
https://escholarship.org/content/qt0b58s22n/qt0b58s22n.pdf

المؤلفون: Lloyd-Price, Jason, Arze, Cesar, Ananthakrishnan, Ashwin N, Schirmer, Melanie, Avila-Pacheco, Julian, Poon, Tiffany W, Andrews, Elizabeth, Ajami, Nadim J, Bonham, Kevin S, Brislawn, Colin J, Casero, David, Courtney, Holly, Gonzalez, Antonio, Graeber, Thomas G, Hall, A Brantley, Lake, Kathleen, Landers, Carol J, Mallick, Himel, Plichta, Damian R, Prasad, Mahadev, Rahnavard, Gholamali, Sauk, Jenny, Shungin, Dmitry, Vázquez-Baeza, Yoshiki, White, Richard A, Braun, Jonathan, Denson, Lee A, Jansson, Janet K, Knight, Rob, Kugathasan, Subra, McGovern, Dermot PB, Petrosino, Joseph F, Stappenbeck, Thaddeus S, Winter, Harland S, Clish, Clary B, Franzosa, Eric A, Vlamakis, Hera, Xavier, Ramnik J, Huttenhower, Curtis

المصدر: Nature. 569(7758)

مصطلحات موضوعية: Microbiology, Biological Sciences, Biomedical and Clinical Sciences, Medical Biochemistry and Metabolomics, Digestive Diseases, Microbiome, Human Genome, Inflammatory Bowel Disease, Crohn's Disease, Nutrition, Autoimmune Disease, Clinical Research, Genetics, 2.1 Biological and endogenous factors, Oral and gastrointestinal, Animals, Fungi, Gastrointestinal Microbiome, Health, Humans, Inflammatory Bowel Diseases, Phylogeny, Species Specificity, Transcriptome, Viruses, IBDMDB Investigators, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0cr648dz
https://escholarship.org/content/qt0cr648dz/qt0cr648dz.pdf

المؤلفون: L. B. Almeida, Bilena, M. Bahrudeen, Mohamed N., Chauhan, Vatsala, Dash, Suchintak, Kandavalli, Vinodh, Häkkinen, Antti, Lloyd-Price, Jason, S. D. Cristina, Palma, Baptista, Ines S. C., Gupta, Abhishekh, Kesseli, Juha, Dufour, Eric, Smolander, Olli-Pekka, Nykter, Matti, Auvinen, Petri, Jacobs, Howard T., M. D. Oliveira, Samuel, S. Ribeiro, Andre

المساهمون: Faculty Common Matters (Faculty of Medicine), CAN-PRO - Translational Cancer Medicine Program, ATG - Applied Tumor Genomics, Institute of Biotechnology, DNA Sequencing and Genomics

مصطلحات موضوعية: Escherichia-coli, Gene-expression, Regulatory mechanisms, Protein, Polymerase, Initiation, Growth, Order, Subunits, Molecule, 11832 Microbiology and virology, Genetics, developmental biology, physiology

وصف الملف: application/pdf

Relation: L. B. Almeida , B , M. Bahrudeen , M N , Chauhan , V , Dash , S , Kandavalli , V , Häkkinen , A , Lloyd-Price , J , S. D. Cristina , P , Baptista , I S C , Gupta , A , Kesseli , J , Dufour , E , Smolander , O-P , Nykter , M , Auvinen , P , Jacobs , H T , M. D. Oliveira , S & S. Ribeiro , A 2022 , ' The transcription factor network of E. coli steers global responses to shifts in RNAP concentration ' , Nucleic Acids Research , vol. 50 , no. 12 , pp. 6801-6819 . https://doi.org/10.1093/nar/gkac540; ORCID: /0000-0002-8081-1588/work/128031738; http://hdl.handle.net/10138/354114; f7832858-5cd8-4cff-a08e-ef3f3d28826c; 000815165900001

الاتاحة: http://hdl.handle.net/10138/354114

المؤلفون: Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A Brantley, Brady, Arthur, Creasy, Heather H, McCracken, Carrie, Giglio, Michelle G, McDonald, Daniel, Franzosa, Eric A, Knight, Rob, White, Owen, Huttenhower, Curtis

المصدر: Nature. 551(7679)

مصطلحات موضوعية: Biomedical and Clinical Sciences, Creative and Professional Writing, Creative Arts and Writing, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9wx152fk

المؤلفون: Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A Brantley, Brady, Arthur, Creasy, Heather H, McCracken, Carrie, Giglio, Michelle G, McDonald, Daniel, Franzosa, Eric A, Knight, Rob, White, Owen, Huttenhower, Curtis

المصدر: Nature. 550(7674)

مصطلحات موضوعية: Microbiology, Biological Sciences, Genetics, Human Genome, Clinical Research, Good Health and Well Being, Datasets as Topic, Humans, Metagenome, Microbiota, Molecular Sequence Annotation, National Institutes of Health (U.S.), Organ Specificity, Phylogeny, Spatio-Temporal Analysis, Time Factors, United States, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0zn5z1nc
https://escholarship.org/content/qt0zn5z1nc/qt0zn5z1nc.pdf

المؤلفون: Ghazi, Andrew R, Sucipto, Kathleen, Rahnavard, Ali, Franzosa, Eric A, McIver, Lauren J, Lloyd-Price, Jason, Schwager, Emma, Weingart, George, Moon, Yo Sup, Morgan, Xochitl C, Waldron, Levi, Huttenhower, Curtis

المساهمون: Army Research Office, National Science Foundation, National Institutes of Health

المصدر: Bioinformatics ; volume 38, issue Supplement_1, page i378-i385 ; ISSN 1367-4803 1367-4811

الاتاحة: http://dx.doi.org/10.1093/bioinformatics/btac232
https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_1/i378/49886995/btac232.pdf

المؤلفون: Ribeiro, Andre S., Kauffman, Stuart A., Lloyd-Price, Jason, Samuelsson, Björn, Socolar, Joshua E. S.

مصطلحات موضوعية: Quantitative Biology - Other Quantitative Biology, Quantitative Biology - Quantitative Methods

URL الوصول: http://arxiv.org/abs/0707.3642

المؤلفون: Kong, Lingjia, Lloyd-Price, Jason, Vatanen, Tommi, Seksik, Philippe, Beaugerie, Laurent, Simon, Tabassome, Vlamakis, Hera, Sokol, Harry, Xavier, Ramnik

المساهمون: Massachusetts Institute of Technology (MIT), Harvard Medical School Boston (HMS), University of Auckland Auckland, Centre de Recherche Saint-Antoine (CRSA), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU), CHU Saint-Antoine AP-HP, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU), FHU Paris Center for Microbiome Medicine (FHU PaCeMM)

المصدر: ISSN: 0016-5085.

مصطلحات موضوعية: CD, Crohn’s Disease, FMT, Fecal Microbiota Transplantation, Metagenomes, Relapse, [SDV]Life Sciences [q-bio]

Relation: info:eu-repo/semantics/altIdentifier/pmid/32860788; PUBMED: 32860788; PUBMEDCENTRAL: PMC7725862

الاتاحة: https://hal.sorbonne-universite.fr/hal-03030862
https://hal.sorbonne-universite.fr/hal-03030862v1/document
https://hal.sorbonne-universite.fr/hal-03030862v1/file/S0016508520351167.pdf
https://doi.org/10.1053/j.gastro.2020.08.045

المؤلفون: Nguyen, Long H., Ma, Wenjie, Wang, Dong D., Cao, Yin, Mallick, Himel, Gerbaba, Teklu K., Lloyd-Price, Jason, Abu-Ali, Galeb, Hall, A. Brantley, Sikavi, Daniel, Drew, David A., Mehta, Raaj S., Arze, Cesar, Joshi, Amit D., Yan, Yan, Branck, Tobyn, DuLong, Casey, Ivey, Kerry L., Ogino, Shuji, Rimm, Eric B., Song, Mingyang, Garrett, Wendy S., Izard, Jacques, Huttenhower, Curtis, Chan, Andrew T.

المساهمون: American Cancer Society, National Institute of Food and Agriculture, Massachusetts General Hospital, Crohn's and Colitis Foundation, National Institutes of Health, Dana-Farber Cancer Institute, Starr Foundation, Cancer Research UK

المصدر: Gastroenterology ; volume 158, issue 5, page 1313-1325 ; ISSN 0016-5085

الاتاحة: http://dx.doi.org/10.1053/j.gastro.2019.12.029
https://api.elsevier.com/content/article/PII:S0016508520300093?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0016508520300093?httpAccept=text/plain

المؤلفون: Yan, Yan, Drew, David A., Markowitz, Arnold, Lloyd-Price, Jason, Abu-Ali, Galeb, Nguyen, Long H., Tran, Christina, Chung, Daniel C., Gilpin, Katherine K., Meixell, Dana, Parziale, Melanie, Schuck, Madeline, Patel, Zalak, Richter, James M., Kelsey, Peter B., Garrett, Wendy S., Chan, Andrew T., Stadler, Zsofia K., Huttenhower, Curtis

المساهمون: Starr Foundation

المصدر: Cell Host & Microbe ; volume 27, issue 4, page 585-600.e4 ; ISSN 1931-3128

الاتاحة: http://dx.doi.org/10.1016/j.chom.2020.03.005
https://api.elsevier.com/content/article/PII:S1931312820301694?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1931312820301694?httpAccept=text/plain

المؤلفون: Oliveira, Samuel M.D., Goncalves, Nadia S.M., Kandavalli, Vinodh K., Neeli-Venkata, Ramakanth, Reyelt, Jan, Fonseca, Jose M, Lloyd-Price, Jason, Kranz, Harald, Martins, Leonardo, Ribeiro, Andre S

المساهمون: Tampere University, BioMediTech, Research group: Laboratory of Biosystem Dynamics-LBD

مصطلحات موضوعية: 217 Medical engineering

وصف الملف: fulltext

Relation: 4486; Sole: 49821589; Wos: 000461151800070; https://trepo.tuni.fi/handle/10024/126899

الاتاحة: https://trepo.tuni.fi/handle/10024/126899
https://doi.org/10.1038/s41598-019-39618-z

المؤلفون: Tripathi, Shailesh, Lloyd-Price, Jason, Ribeiro, Andre, Yli-Harja, Olli, Dehmer, Matthias, Emmert-Streib, Frank

المساهمون: Tampere University, BioMediTech, Faculty of Biomedical Sciences and Engineering, Signal Processing, Research group: Laboratory of Biosystem Dynamics-LBD, Research group: Computational Systems Biology, Research group: Computational Medicine and Statistical Learning Laboratory (CMSL), Research group: Predictive Society and Data Analytics (PSDA)

مصطلحات موضوعية: 113 Computer and information sciences

وصف الملف: fulltext

Relation: 325; 18; https://trepo.tuni.fi/handle/10024/126195

الاتاحة: https://trepo.tuni.fi/handle/10024/126195
https://doi.org/10.1186/s12859-017-1731-8

المؤلفون: Oliveira, Samuel M D, Häkkinen, Antti, Lloyd-Price, Jason, Tran, Huy, Kandavalli, Vinodh, Ribeiro, Andre S.

المساهمون: Tampere University, Department of Signal Processing, Research group: Laboratory of Biosystem Dynamics-LBD

مصطلحات موضوعية: 113 Computer and information sciences

وصف الملف: fulltext

Relation: 1005174; 10; 12; PubMedCentral: PMC5085040; https://trepo.tuni.fi/handle/10024/125906; http://dx.doi.org/10.1371/journal.pcbi.1005174

الاتاحة: https://trepo.tuni.fi/handle/10024/125906
https://doi.org/10.1371/journal.pcbi.1005174

المؤلفون: Chowdhury, Sharif, Lloyd-Price, Jason, Smolander, Olli-Pekka, Baici, Wayne C. V., Hughes, Timothy R., Yli-Harja, Olli, Chua, Gordon, Ribeiro, Andre S.

المساهمون: Institute of Biotechnology

مصطلحات موضوعية: REGULATORY NETWORKS, DYNAMICS, EXPRESSION, CELLS, TIME, CRITICALITY, MODELS

وصف الملف: application/pdf

Relation: Work supported by the Academy of Finland, the Tampere Information Science and Engineering Graduate School and the Finnish Funding Agency for Technology and Innovation.; Chowdhury , S , Lloyd-Price , J , Smolander , O-P , Baici , W C V , Hughes , T R , Yli-Harja , O , Chua , G & Ribeiro , A S 2010 , ' Information propagation within the Genetic Network of Saccharomyces cerevisiae ' , BMC Systems Biology , vol. 4 , 143 . https://doi.org/10.1186/1752-0509-4-143; 77958140978; 64bb0869-f9f2-4cd4-a489-f288932fbe3a; http://hdl.handle.net/10138/164359; 000284000300001

الاتاحة: http://hdl.handle.net/10138/164359

المؤلفون: Lloyd-Price, Jason, Abu-Ali, Galeb, Huttenhower, Curtis

المصدر: Genome Medicine ; volume 8, issue 1 ; ISSN 1756-994X

الاتاحة: http://dx.doi.org/10.1186/s13073-016-0307-y
http://link.springer.com/content/pdf/10.1186/s13073-016-0307-y

المؤلفون: Lloyd-Price, Jason, Startceva, Sofia, Kandavalli, Vinodh, Chandraseelan, Jerome G., Goncalves, Nadia, Oliveira, Samuel M. D., Häkkinen, Antti, Ribeiro, Andre S.

المساهمون: Academy of Finland, Centre of International Mobility, Jenny and Antti Wihuri Foundation, Tampere University of Technology President's Graduate Programme

المصدر: DNA Research ; volume 23, issue 3, page 203-214 ; ISSN 1340-2838 1756-1663

الاتاحة: http://dx.doi.org/10.1093/dnares/dsw009
http://academic.oup.com/dnaresearch/article-pdf/23/3/203/17463027/dsw009.pdf

المؤلفون: L.B. Almeida, Bilena, N.M. Bahrudeen, Mohamed, Chauhan, Vatsala, Dash, Suchintak, Kandavalli, Vinodh, Häkkinen, Antti, Lloyd-Price, Jason, S.D. Palma, Cristina, S.C. Baptista, Ines, Gupta, Abhishekh, Kesseli, Juha, Dufour, Eric, Smolander, Olli-Pekka, Nykter, Matti, Auvinen, Petri, T. Jacobs, Howard, M.D. Oliveira, Samuel, S. Ribeiro, Andre

مصطلحات موضوعية: Gene Regulatory Networks, Genome-wide perturbations, Transcription, Short- and mid-term responses, TF regulatory effects

Relation: https://doi.org/10.1093/nar/gkac540; https://zenodo.org/communities/dryad; https://doi.org/10.5061/dryad.wh70rxwnp; oai:zenodo.org:6841560

الاتاحة: https://doi.org/10.5061/dryad.wh70rxwnp

المؤلفون: Oliveira, Samuel M. D., Neeli‐Venkata, Ramakanth, Goncalves, Nadia S. M., Santinha, João A., Martins, Leonardo, Tran, Huy, Mäkelä, Jarno, Gupta, Abhishekh, Barandas, Marilia, Häkkinen, Antti, Lloyd‐Price, Jason, Fonseca, José M., Ribeiro, Andre S.

المساهمون: Academy of Finland, Portuguese Foundation for Science and Technology, Jenny and Antti Wihuri Foundation (AH), TUT President's grant, Finnish Cultural Foundation

المصدر: Molecular Microbiology ; volume 99, issue 4, page 686-699 ; ISSN 0950-382X 1365-2958

الاتاحة: http://dx.doi.org/10.1111/mmi.13257
https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fmmi.13257
https://onlinelibrary.wiley.com/doi/pdf/10.1111/mmi.13257