يعرض 1 - 20 نتائج من 20 نتيجة بحث عن '"Lee H. Harrison (10819098)"', وقت الاستعلام: 0.38s تنقيح النتائج
  1. 1
    Academic Journal
    ROC (receiver operating characteristic) curves for distinguishing isolate pairs based on each distance metric.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/ROC_receiver_operating_characteristic_curves_for_distinguishing_isolate_pairs_based_on_each_distance_metric_/14613669

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s012

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  2. 2
    Academic Journal
    Time-calibrated phylogeny of genomic cluster 1 (CC11, 1442 isolates, 1,160,070bp core genome alignment).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Time-calibrated_phylogeny_of_genomic_cluster_1_CC11_1442_isolates_1_160_070bp_core_genome_alignment_/14613648

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s005

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  3. 3
    Academic Journal
    Time-calibrated phylogeny of genomic cluster 9 (CC167, 105 isolates, 1,543,098bp core genome alignment).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Time-calibrated_phylogeny_of_genomic_cluster_9_CC167_105_isolates_1_543_098bp_core_genome_alignment_/14613660

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s009

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  4. 4
    Academic Journal
    Cumulative distribution of distances among outbreak isolates in the same clade, including a subset that was limited to the pairs that were collected within 6 months of each other.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Cumulative_distribution_of_distances_among_outbreak_isolates_in_the_same_clade_including_a_subset_that_was_limited_to_the_pairs_that_were_collected_within_6_months_of_each_other_/14613666

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s011

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  5. 5
    Academic Journal
    S8 Fig -

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/S8_Fig_-/14613663

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s010

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  6. 6
    Academic Journal
    Demographic history of cluster 8 partitions (CC103, shown in S6 Fig).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Demographic_history_of_cluster_8_partitions_CC103_shown_in_S6_Fig_/14613675

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s014

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  7. 7
    Academic Journal
    Demographic history of genomic cluster 5 partitions (CC32, shown in S5 Fig).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Demographic_history_of_genomic_cluster_5_partitions_CC32_shown_in_S5_Fig_/14613672

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s013

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  8. 8
    Academic Journal
    Time-calibrated phylogeny of genomic cluster 4 (CC269, 712 isolates, 1,045,137bp core genome alignment).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Time-calibrated_phylogeny_of_genomic_cluster_4_CC269_712_isolates_1_045_137bp_core_genome_alignment_/14613651

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s006

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  9. 9
    Academic Journal
    Time-calibrated phylogeny of genomic cluster 5 (CC32, 466 isolates, 1,277,833bp core genome alignment).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Time-calibrated_phylogeny_of_genomic_cluster_5_CC32_466_isolates_1_277_833bp_core_genome_alignment_/14613654

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s007

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  10. 10
    Academic Journal
    Time-calibrated phylogeny of genomic cluster 8 (CC103, 140 isolates, 1,597,249bp core genome alignment).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Time-calibrated_phylogeny_of_genomic_cluster_8_CC103_140_isolates_1_597_249bp_core_genome_alignment_/14613657

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s008

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  11. 11
    Academic Journal
    Relationship of phylogenetic distance to other genome distance metrics.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Relationship_of_phylogenetic_distance_to_other_genome_distance_metrics_/14613645

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s004

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  12. 12
    Academic Journal
    Violin plot showing the distribution of phylogenetic distances within genomic clusters.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/journal_contribution/Violin_plot_showing_the_distribution_of_phylogenetic_distances_within_genomic_clusters_/14613642

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s003

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  13. 13
    Threshold values for each distance metric based on percentile of comparisons within outbreak isolates from the same clade.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/dataset/Threshold_values_for_each_distance_metric_based_on_percentile_of_comparisons_within_outbreak_isolates_from_the_same_clade_/14613639

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s002

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  14. 14
    Image
    Time-calibrated phylogenetic tree of a CC32 US-specific clade that contains closely related isolates from four organization-based outbreaks (OB11: green; OB12: red; OB24: blue; OB25; yellow).

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/figure/Time-calibrated_phylogenetic_tree_of_a_CC32_US-specific_clade_that_contains_closely_related_isolates_from_four_organization-based_outbreaks_OB11_green_OB12_red_OB24_blue_OB25_yellow_/14613681

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.g002

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  15. 15
    Image
    Fig 1 -

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/figure/Fig_1_-/14613678

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.g001

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  16. 16
    Summary of outbreak clades identified in the phylogenetic trees.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/dataset/Summary_of_outbreak_clades_identified_in_the_phylogenetic_trees_/14613690

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.t002

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  17. 17
    Image
    Cumulative distribution of phylogenetic distances (substitutions per site) between pairs of US isolates.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/figure/Cumulative_distribution_of_phylogenetic_distances_substitutions_per_site_between_pairs_of_US_isolates_/14613684

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.g003

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  18. 18
    Summary of outbreaks examined in this study.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/dataset/Summary_of_outbreaks_examined_in_this_study_/14613687

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.t001

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  19. 19
    Effectiveness of outbreak-based thresholds at distinguishing among non-outbreak isolate pairs with the same serogroup, collected in the same state within 3 months of each other.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/dataset/Effectiveness_of_outbreak-based_thresholds_at_distinguishing_among_non-outbreak_isolate_pairs_with_the_same_serogroup_collected_in_the_same_state_within_3_months_of_each_other_/14613693

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.t003

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  20. 20
    Information on genome sequences used in this study.

    المؤلفون: Adam C. Retchless (5063606), Alex Chen (589137), How-Yi Chang (4908184), Amy E. Blain (10819095), Lucy A. McNamara (9635604), Mustapha M. Mustapha (5710538), Lee H. Harrison (10819098), Xin Wang (91924)

    مصطلحات موضوعية: Microbiology, Genetics, Biotechnology, Evolutionary Biology, Ecology, Marine Biology, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, USA, outbreak strains, genome distance thresholds, outbreak strain identification Meni., human-restricted bacterium Neisseri., CC, clonal, Neisseria meningitidis genomic dive., Interpreting genome distances, pathogen transmission, SNP

    Relation: https://figshare.com/articles/dataset/Information_on_genome_sequences_used_in_this_study_/14613636

    الاتاحة: https://doi.org/10.1371/journal.ppat.1009586.s001

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