المؤلفون: Katherine A. Kiwimagi, Justin H. Letendre, Benjamin H. Weinberg, Junmin Wang, Mingzhe Chen, Leandro Watanabe, Chris J. Myers, Jacob Beal, Wilson W. Wong, Ron Weiss

المصدر: Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2399-3642

URL الوصول: https://doaj.org/article/d4030bb1a2c34df186adb664ad87a908

المؤلفون: Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomáš Helikar, Stefan Hoops, Rahuman S Malik‐Sheriff, Stuart L Moodie, Ion I Moraru, Chris J Myers, Aurélien Naldi, Brett G Olivier, Sven Sahle, James C Schaff, Lucian P Smith, Maciej J Swat, Denis Thieffry, Leandro Watanabe, Darren J Wilkinson, Michael L Blinov, Kimberly Begley, James R Faeder, Harold F Gómez, Thomas M Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L Lister, Daniel Lucio, Eric Mjolsness, Carole J Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A Shaffer, Bruce E Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier‐Schellersheim, Herbert M Sauro, Bernhard Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C Doyle, Michael Hucka, SBML Level 3 Community members, Richard R Adams, Nicholas A Allen, Bastian R Angermann, Marco Antoniotti, Gary D Bader, Jan Červený, Mélanie Courtot, Chris D Cox, Piero Dalle Pezze, Emek Demir, William S Denney, Harish Dharuri, Julien Dorier, Dirk Drasdo, Ali Ebrahim, Johannes Eichner, Johan Elf, Lukas Endler, Chris T Evelo, Christoph Flamm, Ronan MT Fleming, Martina Fröhlich, Mihai Glont, Emanuel Gonçalves, Martin Golebiewski, Hovakim Grabski, Alex Gutteridge, Damon Hachmeister, Leonard A Harris, Benjamin D Heavner, Ron Henkel, William S Hlavacek, Bin Hu, Daniel R Hyduke, Hidde de Jong, Nick Juty, Peter D Karp, Jonathan R Karr, Douglas B Kell, Roland Keller, Ilya Kiselev, Steffen Klamt, Edda Klipp, Christian Knüpfer, Fedor Kolpakov, Falko Krause, Martina Kutmon, Camille Laibe, Conor Lawless, Lu Li, Leslie M Loew, Rainer Machne, Yukiko Matsuoka, Pedro Mendes, Huaiyu Mi, Florian Mittag, Pedro T Monteiro, Kedar Nath Natarajan, Poul MF Nielsen, Tramy Nguyen, Alida Palmisano, Jean‐Baptiste Pettit, Thomas Pfau, Robert D Phair, Tomas Radivoyevitch, Johann M Rohwer, Oliver A Ruebenacker, Julio Saez‐Rodriguez, Martin Scharm, Henning Schmidt, Falk Schreiber, Michael Schubert, Roman Schulte, Stuart C Sealfon, Kieran Smallbone, Sylvain Soliman, Melanie I Stefan, Devin P Sullivan, Koichi Takahashi, Bas Teusink, David Tolnay, Ibrahim Vazirabad, Axel von Kamp, Ulrike Wittig, Clemens Wrzodek, Finja Wrzodek, Ioannis Xenarios, Anna Zhukova, Jeremy Zucker

المصدر: Molecular Systems Biology, Vol 16, Iss 8, Pp 1-21 (2020)

مصطلحات موضوعية: computational modeling, file format, interoperability, reproducibility, systems biology, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/86e517962df24b21af078b7f951f7487

المؤلفون: Nicolas Rodriguez, Andreas Dräger, Mike Hucka, David Emanuel Vetter, Roman Schulte, Bhavye Jain, Christoph Blessing, Leandro Watanabe, tmHamm, Onur101010, Jakob Admard, MeikeAi, Ibrahim Vazirabad, Alexander Dörr, Piero Dalle Pezze, Clemens82, Lisa Falk, marine3, Wrzodek, Alex Thomas, thortiede, RolandKeller5, Florian Mittag, Jan Rudolph, Victor Kofia, Tramy Nguyen, Eugen Netz, LeaBuchweitz, Thomas Zajac

Relation: https://github.com/sbmlteam/jsbml/tree/jsbml-0.8-b2; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.5833873; oai:zenodo.org:5833873

الاتاحة: https://doi.org/10.5281/zenodo.5833873

المؤلفون: Nicolas Rodriguez, Andreas Dräger, Mike Hucka, David Emanuel Vetter, Roman Schulte, Bhavye Jain, Christoph Blessing, Leandro Watanabe, tmHamm, Onur101010, Jakob Admard, MeikeAi, Ibrahim Vazirabad, Alexander Dörr, Piero Dalle Pezze, Clemens82, Lisa Falk, marine3, Wrzodek, Alex Thomas, thortiede, RolandKeller5, Florian Mittag, Jan Rudolph, Victor Kofia, Tramy Nguyen, Eugen Netz, LeaBuchweitz, Thomas Zajac

Relation: https://github.com/sbmlteam/jsbml/tree/jsbml-0.8-b1; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.5833874; oai:zenodo.org:5833874

الاتاحة: https://doi.org/10.5281/zenodo.5833874

المؤلفون: Nicolas Rodriguez, Andreas Dräger, Mike Hucka, David Emanuel Vetter, Roman Schulte, Bhavye Jain, Christoph Blessing, Leandro Watanabe, tmHamm, Onur101010, Jakob Admard, MeikeAi, Ibrahim Vazirabad, Alexander Dörr, Piero Dalle Pezze, Clemens82, Lisa Falk, marine3, Wrzodek, Alex Thomas, thortiede, RolandKeller5, Florian Mittag, Jan Rudolph, Victor Kofia, Tramy Nguyen, Eugen Netz, LeaBuchweitz, Thomas Zajac

Relation: https://github.com/sbmlteam/jsbml/tree/jsbml-1.6.1; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.5833365; oai:zenodo.org:5833365

الاتاحة: https://doi.org/10.5281/zenodo.5833365

المؤلفون: Chris J. Myers, Jacob Barhak, Leandro Watanabe

المصدر: SIMULATION. 95:895-930

مصطلحات موضوعية: 0301 basic medicine, Markup language, Computer science, Systems biology, Microsimulation, 02 engineering and technology, Disease, Markov model, Computer Graphics and Computer-Aided Design, Data science, 020202 computer hardware & architecture, 03 medical and health sciences, 030104 developmental biology, Modeling and Simulation, 0202 electrical engineering, electronic engineering, information engineering, SBML, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::68d7b355e640233502fec6a24ef83a11
https://doi.org/10.1177/0037549718793214

المؤلفون: Nicolas Rodriguez, Andreas Dräger, Mike Hucka, David Emanuel Vetter, Roman Schulte, Bhavye Jain, Christoph Blessing, Leandro Watanabe, tmHamm, Onur101010, Jakob Admard, MeikeAi, Ibrahim Vazirabad, Alexander Dörr, Piero Dalle Pezze, Clemens82, Lisa Falk, marine3, Wrzodek, Alex Thomas, thortiede, RolandKeller5, Florian Mittag, Jan Rudolph, Victor Kofia, Tramy Nguyen, Eugen Netz, LeaBuchweitz, Thomas Zajac

Relation: https://github.com/sbmlteam/jsbml/tree/v1.6; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.5789493; oai:zenodo.org:5789493

الاتاحة: https://doi.org/10.5281/zenodo.5789493

المؤلفون: Edda Klipp, Marco Antoniotti, Frank Bergmann, James C. Schaff, Peter D. Karp, Daniel Lucio, Kedar Nath Natarajan, Thomas M. Hamm, Leandro Watanabe, Henning Hermjakob, David Tolnay, John Wagner, Joerg Stelling, Alida Palmisano, Falk Schreiber, Yukiko Matsuoka, Harold F. Gómez, Huaiyu Mi, Carole J. Proctor, Ulrike Wittig, Neil Swainston, Jan Červený, Denis Thieffry, Piero Dalle Pezze, Julio Saez-Rodriguez, Maciej J. Swat, Bin Hu, Martina Kutmon, Thomas Pfau, Bas Teusink, Sarah M. Keating, Fedor A. Kolpakov, Andreas Dräger, Pedro Mendes, Martin Scharm, Emek Demir, Ioannis Xenarios, Christoph Flamm, Axel von Kamp, Darren J. Wilkinson, Nick Juty, Fengkai Zhang, Leonard A. Harris, Michael Schubert, Dagmar Waltemath, Lucian P. Smith, Steffen Klamt, Herbert M. Sauro, Ali Ebrahim, Wolfram Liebermeister, Christian Knüpfer, Nicolas Rodriguez, Tramy Nguyen, Naoki Tanimura, Christopher Cox, Stuart C. Sealfon, Nicholas Alexander Allen, Clemens Wrzodek, Bastian R. Angermann, Martin Meier-Schellersheim, Anna Zhukova, Jean-Baptiste Pettit, Hovakim Grabski, Devin P. Sullivan, Claudine Chaouiya, Michael L. Blinov, John Doyle, Ilya Kiselev, Roman Schulte, Alex Gutteridge, Mélanie Courtot, Eric Mjolsness, Finja Wrzodek, Rahuman S Malik-Sheriff, Ronan M. T. Fleming, Bruce E. Shapiro, Kimberly Begley, Leslie M. Loew, Colin S. Gillespie, Ibrahim Vazirabad, Michael Hucka, Akira Funahashi, Bernhard O. Palsson, Hamid Bolouri, Tomáš Helikar, Camille Laibe, William S. Denney, Chris T. Evelo, Florian Mittag, William S. Hlavacek, Ron Henkel, Harish Dharuri, Julien Dorier, Karthik Raman, Martina Fröhlich, Conor Lawless, Rainer Machné, Falko Krause, Damon Hachmeister, Matthias König, Clifford A. Shaffer, Benjamin D. Heavner, Douglas B. Kell, Jonathan R. Karr, Mihai Glont, Lukas Endler, Melanie I. Stefan, Robert Phair, Lu Li, Henning Schmidt, Dirk Drasdo, Johan Elf, Allyson L. Lister, Hiroaki Kitano, Richard R. Adams, Oliver A. Ruebenacker, Roland Keller, Sven Sahle, Ion I. Moraru, Gary D. Bader, Poul M. F. Nielsen, Johann M. Rohwer, Johannes Eichner, Daniel R. Hyduke, James R. Faeder, Stefan Hoops, Emanuel Gonçalves, Yuichiro Inagaki, Aurélien Naldi, Koichi Takahashi, Sylvain Soliman, Brett G. Olivier, Kieran Smallbone, Stuart L. Moodie, Pedro T. Monteiro, Chris J. Myers, Martin Golebiewski, Tomas Radivoyevitch, Jeremy Zucker, Hidde de Jong, Andrew Finney

المساهمون: Keating, S, Waltemath, D, König, M, Zhang, F, Dräger, A, Chaouiya, C, Bergmann, F, Finney, A, Gillespie, C, Helikar, T, Hoops, S, Malik-Sheriff, R, Moodie, S, Moraru, I, Myers, C, Naldi, A, Olivier, B, Sahle, S, Schaff, J, Smith, L, Swat, M, Thieffry, D, Watanabe, L, Wilkinson, D, Blinov, M, Begley, K, Faeder, J, Gómez, H, Hamm, T, Inagaki, Y, Liebermeister, W, Lister, A, Lucio, D, Mjolsness, E, Proctor, C, Raman, K, Rodriguez, N, Shaffer, C, Shapiro, B, Stelling, J, Swainston, N, Tanimura, N, Wagner, J, Meier-Schellersheim, M, Sauro, H, Palsson, B, Bolouri, H, Kitano, H, Funahashi, A, Hermjakob, H, Doyle, J, Hucka, M, Adams, R, Allen, N, Angermann, B, Antoniotti, M, Bader, G, Červený, J, Courtot, M, Cox, C, Dalle Pezze, P, Demir, E, Denney, W, Dharuri, H, Dorier, J, Drasdo, D, Ebrahim, A, Eichner, J, Elf, J, Endler, L, Evelo, C, Flamm, C, Fleming, R, Fröhlich, M, Glont, M, Gonçalves, E, Golebiewski, M, Grabski, H, Gutteridge, A, Hachmeister, D, Harris, L, Heavner, B, Henkel, R, Hlavacek, W, Hu, B, Hyduke, D, Jong, H, Juty, N, Karp, P, Karr, J, Kell, D, Keller, R, Kiselev, I, Klamt, S, Klipp, E, Knüpfer, C, Kolpakov, F, Krause, F, Kutmon, M, Laibe, C, Lawless, C, Li, L, Loew, L, Machne, R, Matsuoka, Y, Mendes, P, Mi, H, Mittag, F, Monteiro, P, Natarajan, K, Nielsen, P, Nguyen, T, Palmisano, A, Jean-Baptiste, P, Pfau, T, Phair, R, Radivoyevitch, T, Rohwer, J, Ruebenacker, O, Saez-Rodriguez, J, Scharm, M, Schmidt, H, Schreiber, F, Schubert, M, Schulte, R, Sealfon, S, Smallbone, K, Soliman, S, Stefan, M, Sullivan, D, Takahashi, K, Teusink, B, Tolnay, D, Vazirabad, I, Kamp, A, Wittig, U, Wrzodek, C, Wrzodek, F, Xenarios, I, Zhukova, A, Zucker, J, European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Heidelberg University Hospital [Heidelberg], Swiss Institute of Bioinformatics [Lausanne] (SIB), Université de Lausanne = University of Lausanne (UNIL), European Molecular Biology Laboratory (EMBL), University of Connecticut (UCONN), National Institutes of Health [Bethesda] (NIH), Chercheur indépendant, Amazon Web Services [Seattle] (AWS), Università degli Studi di Milano-Bicocca = University of Milano-Bicocca (UNIMIB), University of Toronto, Masaryk University [Brno] (MUNI), Terry Fox Laboratory, BC Cancer Agency (BCCRC)-British Columbia Cancer Agency Research Centre, The University of Tennessee [Knoxville], The Babraham Institute [Cambridge, UK], Oregon Health and Science University [Portland] (OHSU), Human Predictions LLC, Illumina, Swiss-Prot Group, Swiss Institute of Bioinformatics [Genève] (SIB), Modelling and Analysis for Medical and Biological Applications (MAMBA), Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Jacques-Louis Lions (LJLL (UMR_7598)), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), University of California [San Diego] (UC San Diego), University of California (UC), Center for Bioinformatics (ZBIT), Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen, Uppsala University, Institut für Populationsgenetik [Vienna], Veterinärmedizinische Universität Wien, Maastricht University [Maastricht], Alpen-Adria-Universität Klagenfurt [Klagenfurt, Austria], Medizinische Universität Wien = Medical University of Vienna, German Cancer Research Center - Deutsches Krebsforschungszentrum [Heidelberg] (DKFZ), Heidelberg Institute for Theoretical Studies (HITS ), Russian-Armenian University (RAU), GlaxoSmithKline [Stevenage, UK] (GSK), GlaxoSmithKline [Headquarters, London, UK] (GSK), Microsoft Technology Licensing (MTL), Microsoft Corporation [Redmond, Wash.], Vanderbilt University School of Medicine [Nashville], University of Washington [Seattle], University of Rostock, Los Alamos National Laboratory (LANL), Lorentz Institute, Universiteit Leiden, Tegmine Therapeutics, Modeling, simulation, measurement, and control of bacterial regulatory networks (IBIS), Laboratoire Adaptation et pathogénie des micro-organismes [Grenoble] (LAPM), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut Jean Roget, SRI International [Menlo Park] (SRI), Icahn School of Medicine at Mount Sinai [New York] (MSSM), University of Liverpool, Universitätsklinikum Tübingen - University Hospital of Tübingen, Institute of Information and Computational Technologies (IICT), Max Planck Institute for Dynamics of Complex Technical Systems, Max-Planck-Gesellschaft, Max-Planck-Institut für Molekulare Genetik (MPIMG), Friedrich-Schiller-Universität = Friedrich Schiller University Jena [Jena, Germany], Humboldt University Of Berlin, Newcastle University [Newcastle], École polytechnique (X), Heinrich Heine Universität Düsseldorf = Heinrich Heine University [Düsseldorf], The Systems Biology Institute [Tokyo] (SBI), Centro de Quimica Estrutural (CQE), Instituto Superior Técnico, Universidade Técnica de Lisboa (IST), University of Southern California (USC), Instituto Gulbenkian de Ciência [Oeiras] (IGC), Fundação Calouste Gulbenkian, University of Southern Denmark (SDU), University of Auckland [Auckland], University of Utah, Virginia Tech [Blacksburg], University of Luxembourg [Luxembourg], Integrative Bioinformatics Inc [Mountain View], Cleveland Clinic, Stellenbosch University, Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Universität Heidelberg [Heidelberg] = Heidelberg University, Leibniz Institute of Plant Genetics and Crop Plant Research [Gatersleben] (IPK-Gatersleben), Laboratoire de Biologie du Développement de Villefranche sur mer (LBDV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Mount Sinai School of Medicine, Department of Psychiatry-Icahn School of Medicine at Mount Sinai [New York] (MSSM), University of Manchester [Manchester], Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), California Institute of Technology (CALTECH), Encodia Inc [San Diego], Shinshu University [Nagano], University of Amsterdam [Amsterdam] (UvA), Versiti Blood Center of Wisconsin, Greifswald University Hospital, Bioinformatique évolutive - Evolutionary Bioinformatics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Pacific Northwest National Laboratory (PNNL), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), Department of Bioengineering, University of California (UC)-University of California (UC), ANSYS, Virginia Polytechnic Institute and State University [Blacksburg], Eight Pillars Ltd, Center for Integrative Genomics - Institute of Bioinformatics, Génopode (CIG), Université de Lausanne = University of Lausanne (UNIL)-Université de Lausanne = University of Lausanne (UNIL), Universität Heidelberg, Bioquant, Applied Biomathematics [New York], SimCYP Ltd, Institut de biologie de l'ENS Paris (IBENS), Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), University of Utah School of Medicine [Salt Lake City], University of Pittsburgh School of Medicine, Pennsylvania Commonwealth System of Higher Education (PCSHE), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Mizuho Information and Research Institute, Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas] (MaIAGE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Oxford, Computer Science (North Carolina State University), North Carolina State University [Raleigh] (NC State), University of North Carolina System (UNC)-University of North Carolina System (UNC), University of California [Irvine] (UC Irvine), Indian Institute of Technology Madras (IIT Madras), California State University [Northridge] (CSUN), Biotechnology and Biological Sciences Research Council (BBSRC), IBM Research [Melbourne], Benaroya Research Institute [Seattle] (BRI), Okinawa Institute of Science and Technology Graduate University, Keio University, Department of Computing and Mathematical sciences, members, SBML Level 3 Community, Université de Lausanne (UNIL), Università degli Studi di Milano-Bicocca [Milano] (UNIMIB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), University of California, Universiteit Leiden [Leiden], Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Inria Grenoble - Rhône-Alpes, Humboldt University of Berlin, Universität Heidelberg [Heidelberg], Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Humboldt-Universität zu Berlin, University of California-University of California, Université de Lausanne (UNIL)-Université de Lausanne (UNIL), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), University of Oxford [Oxford], University of California [Irvine] (UCI), Biotechnology and Biological Sciences Research Council, Computer Science, Institut de biologie de l'ENS Paris (UMR 8197/1024) (IBENS), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris)

المصدر: Molecular Systems Biology
Molecular Systems Biology, 2020, 16 (8), pp.1-21. ⟨10.15252/msb.20199110⟩
Molecular systems biology, vol 16, iss 8
Molecular Systems Biology, EMBO Press, 2020, 16 (8), pp.1-21. ⟨10.15252/msb.20199110⟩
Keating, S M, Waltemath, D, König, M, Zhang, F, Dräger, A, Chaouiya, C, Bergmann, F T, Finney, A, Gillespie, C S, Helikar, T, Hoops, S, Malik-Sheriff, R S, Moodie, S L, Moraru, I I, Myers, C J, Naldi, A, Olivier, B G, Sahle, S, Schaff, J C, Smith, L P, Swat, M J, Thieffry, D, Watanabe, L, Wilkinson, D J, Blinov, M L, Begley, K, Faeder, J R, Gómez, H F, Hamm, T M, Inagaki, Y, Liebermeister, W, Lister, A L, Lucio, D, Mjolsness, E, Proctor, C J, Raman, K, Rodriguez, N, Shaffer, C A, Shapiro, B E, Stelling, J, Swainston, N, Tanimura, N, Wagner, J, Meier-Schellersheim, M, Sauro, H M, Palsson, B, Bolouri, H, Kitano, H, Funahashi, A, Hermjakob, H, Doyle, J C, Hucka, M, Adams, R R, Allen, N A, Angermann, B R, Antoniotti, M, Bader, G D, Červený, J, Courtot, M, Cox, C D, Dalle Pezze, P, Demir, E, Denney, W S, Dharuri, H, Dorier, J, Drasdo, D, Ebrahim, A, Eichner, J, Elf, J, Endler, L, Evelo, C T, Flamm, C, Fleming, R M T, Fröhlich, M, Glont, M, Gonçalves, E, Golebiewski, M, Grabski, H, Gutteridge, A, Hachmeister, D, Harris, L A, Heavner, B D, Henkel, R, Hlavacek, W S, Hu, B, Hyduke, D R, de Jong, H, Juty, N, Karp, P D, Karr, J R, Kell, D B, Keller, R, Kiselev, I, Klamt, S, Klipp, E, Knüpfer, C, Kolpakov, F, Krause, F, Kutmon, M, Laibe, C, Lawless, C, Li, L, Loew, L M, Machne, R, Matsuoka, Y, Mendes, P, Mi, H, Mittag, F, Monteiro, P T, Natarajan, K N, Nielsen, P M F, Nguyen, T, Palmisano, A, Pettit, J B, Pfau, T, Phair, R D, Radivoyevitch, T, Rohwer, J M, Ruebenacker, O A, Saez-Rodriguez, J, Scharm, M, Schmidt, H, Schreiber, F, Schubert, M, Schulte, R, Sealfon, S C, Smallbone, K, Soliman, S, Stefan, M I, Sullivan, D P, Takahashi, K, Teusink, B, Tolnay, D, Vazirabad, I, von Kamp, A, Wittig, U, Wrzodek, C, Wrzodek, F, Xenarios, I, Zhukova, A & Zucker, J 2020, ' SBML Level 3 : an extensible format for the exchange and reuse of biological models ', Molecular Systems Biology, vol. 16, no. 8, e9110, pp. 1-21 . https://doi.org/10.15252/msb.20199110
MOLECULAR SYSTEMS BIOLOGY
Molecular Systems Biology, Vol 16, Iss 8, Pp n/a-n/a (2020)

مصطلحات موضوعية: computational modeling, Medicine (General), Markup language, [SDV.BIO]Life Sciences [q-bio]/Biotechnology, INFORMATION, Interoperability, interoperability, Review, [SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC], ANNOTATION, 0302 clinical medicine, Software, file forma, Models, Biology (General), 0303 health sciences, Computational model, Applied Mathematics, Systems Biology, systems biology, File format, 3. Good health, Networking and Information Technology R&D, Networking and Information Technology R&D (NITRD), Computational Theory and Mathematics, SIMULATION, General Agricultural and Biological Sciences, STANDARDS, REPOSITORY, Information Systems, QH301-705.5, Bioinformatics, Systems biology, Software ecosystem, Reviews, Bioengineering, Methods & Resources, Biology, MARKUP LANGUAGE, Models, Biological, SBML Level 3 Community members, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, R5-920, Animals, Humans, SBML, reproducibility, 030304 developmental biology, ENVIRONMENT, General Immunology and Microbiology, file format, business.industry, Computational Biology, Biological, ONTOLOGY, Metabolism, Logistic Models, Biochemistry and Cell Biology, Other Biological Sciences, Software engineering, business, 030217 neurology & neurosurgery

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa48af775634bdfd1c248e236b20ef61
http://hdl.handle.net/10281/282956

المؤلفون: Sarah M, Keating, Dagmar, Waltemath, Matthias, König, Fengkai, Zhang, Andreas, Dräger, Claudine, Chaouiya, Frank T, Bergmann, Andrew, Finney, Colin S, Gillespie, Tomáš, Helikar, Stefan, Hoops, Rahuman S, Malik‐Sheriff, Stuart L, Moodie, Ion I, Moraru, Chris J, Myers, Aurélien, Naldi, Brett G, Olivier, Sven, Sahle, James C, Schaff, Lucian P, Smith, Maciej J, Swat, Denis, Thieffry, Leandro, Watanabe, Darren J, Wilkinson, Michael L, Blinov, Kimberly, Begley, James R, Faeder, Harold F, Gómez, Thomas M, Hamm, Yuichiro, Inagaki, Wolfram, Liebermeister, Allyson L, Lister, Daniel, Lucio, Eric, Mjolsness, Carole J, Proctor, Karthik, Raman, Nicolas, Rodriguez, Clifford A, Shaffer, Bruce E, Shapiro, Joerg, Stelling, Neil, Swainston, Naoki, Tanimura, John, Wagner, Martin, Meier‐Schellersheim, Herbert M, Sauro, Bernhard, Palsson, Hamid, Bolouri, Hiroaki, Kitano, Akira, Funahashi, Henning, Hermjakob, John C, Doyle, Michael, Hucka, Richard R, Adams, Nicholas A, Allen, Bastian R, Angermann, Marco, Antoniotti, Gary D, Bader, Jan, Červený, Mélanie, Courtot, Chris D, Cox, Piero, Dalle Pezze, Emek, Demir, William S, Denney, Harish, Dharuri, Julien, Dorier, Dirk, Drasdo, Ali, Ebrahim, Johannes, Eichner, Johan, Elf, Lukas, Endler, Chris T, Evelo, Christoph, Flamm, Ronan MT, Fleming, Martina, Fröhlich, Mihai, Glont, Emanuel, Gonçalves, Martin, Golebiewski, Hovakim, Grabski, Alex, Gutteridge, Damon, Hachmeister, Leonard A, Harris, Benjamin D, Heavner, Ron, Henkel, William S, Hlavacek, Bin, Hu, Daniel R, Hyduke, Hidde, Jong, Nick, Juty, Peter D, Karp, Jonathan R, Karr, Douglas B, Kell, Roland, Keller, Ilya, Kiselev, Steffen, Klamt, Edda, Klipp, Christian, Knüpfer, Fedor, Kolpakov, Falko, Krause, Martina, Kutmon, Camille, Laibe, Conor, Lawless, Lu, Li, Leslie M, Loew, Rainer, Machne, Yukiko, Matsuoka, Pedro, Mendes, Huaiyu, Mi, Florian, Mittag, Pedro T, Monteiro, Kedar Nath, Natarajan, Poul MF, Nielsen, Tramy, Nguyen, Alida, Palmisano, Jean‐Baptiste, Pettit, Thomas, Pfau, Robert D, Phair, Tomas, Radivoyevitch, Johann M, Rohwer, Oliver A, Ruebenacker, Julio, Saez‐Rodriguez, Martin, Scharm, Henning, Schmidt, Falk, Schreiber, Michael, Schubert, Roman, Schulte, Stuart C, Sealfon, Kieran, Smallbone, Sylvain, Soliman, Melanie I, Stefan, Devin P, Sullivan, Koichi, Takahashi, Bas, Teusink, David, Tolnay, Ibrahim, Vazirabad, Axel, Kamp, Ulrike, Wittig, Clemens, Wrzodek, Finja, Wrzodek, Ioannis, Xenarios, Takahiro G, Yamada, Anna, Zhukova, Jeremy, Zucker

مصطلحات الفهرس: computational modeling, file forma, interoperability, reproducibility, systems biology, Journal Article, VoR

URL: http://id.nii.ac.jp/1394/00001674/
https://oist.repo.nii.ac.jp/?action=repository_action_common_download&item_id=1857&item_no=1&attribute_id=22&file_no=1
https://doi.org/10.15252/msb.20199110
32845085
https://doi.org/10.15252/msb.20199110

المؤلفون: Nicolas Rodriguez, Andreas Dräger, DEVetter, Mike Hucka, Roman Schulte, Bhavye Jain, Christoph Blessing, Leandro Watanabe, tmHamm, Jakob Matthes, MeikeAi, Onur101010, Ibrahim Vazirabad, Alexander Dörr, Piero Dalle Pezze, Clemens82, Lisa Falk, marine3, Wrzodek, Alex Thomas, thortiede, RolandKeller5, The Sentry, Victor, Jan Rudolph, Tramy Nguyen, Thomas Zajac, LeaBuchweitz, Eugen Netz, Harold Gomez

Relation: https://github.com/sbmlteam/jsbml/tree/v1.5-zenodo; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.3751775; oai:zenodo.org:3751775

الاتاحة: https://doi.org/10.5281/zenodo.3751775

المؤلفون: Nicolas Rodriguez, Andreas Dräger, Mike Hucka, Roman Schulte, Leandro Watanabe, tmHamm, Jakob Matthes, Ibrahim Vazirabad, a-doerr, Piero Dalle Pezze, Clemens82, Tramy Nguyen, The Sentry, Alex Thomas, Jan Rudolph, Victor Kofia, Lisa Falk, Thomas Zajac, Eugen Netz, LeaBuchweitz, Harold Gomez, Alexander Peltzer, Sebastian Nagel, Katrin Leinweber

Relation: https://github.com/sbmlteam/jsbml/tree/jsbml-1.4; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.1346189; oai:zenodo.org:1346189

الاتاحة: https://doi.org/10.5281/zenodo.1346189

المؤلفون: Nicolas Rodriguez, Lisa Falk, Akira Funahashi, Thomas M. Hamm, Michael Hucka, Victor Kofia, Jakob Matthes, Florian Mittag, Eugen Netz, Piero Dalle Pezze, Jan D. Rudolph, Roman Schulte, Alex Thomas, Ibrahim Y. Vazirabad, Leandro Watanabe, Clemens Wrzodek, Finja Wrzodek, Thomas J. Zajac, Andreas Dräger

المساهمون: Maike Aichele, Alexander Diamantikos, Alexander Dörr, Marine Dumousseau, Johannes Eichner, Sebastian Fröhlich, Harold Gómez, Stephanie Hoffmann, Roland Keller, Sebastian Nagel, Alexander Peltzer, Simon Schäfer, Sarah Rachel Müller vom Hagen

مصطلحات موضوعية: SBML, Systems Biology, Java, Library, Parser library, Modeling, API

Relation: 964

الاتاحة: https://doi.org/10.5281/zenodo.595308

المؤلفون: Matthias König, Leandro Watanabe

Relation: https://github.com/matthiaskoenig/dfba/tree/v0.3.2; https://doi.org/10.5281/zenodo.1038148; https://doi.org/10.5281/zenodo.1045526; oai:zenodo.org:1045526

الاتاحة: https://doi.org/10.5281/zenodo.1045526

المؤلفون: Matthias König, Leandro Watanabe

Relation: https://github.com/matthiaskoenig/dfba/tree/v0.3.0; https://doi.org/10.5281/zenodo.1038148; https://doi.org/10.5281/zenodo.1038149; oai:zenodo.org:1038149

الاتاحة: https://doi.org/10.5281/zenodo.1038149

المؤلفون: Nicolas Rodriguez, Andreas Dräger, Mike Hucka, Roman Schulte, Leandro Watanabe, Ibrahim Vazirabad, a-doerr, Piero Dalle Pezze, Clemens82, Tramy Nguyen, tmHamm, The Sentry, Alex Thomas, Victor Kofia, Jakob Matthes, Jan Rudolph, Lisa Falk, Eugen Netz, Thomas Zajac, Harold Gomez, Alexander Peltzer, Sebastian Nagel

Relation: https://github.com/sbmlteam/jsbml/tree/jsbml-1.3; https://doi.org/10.5281/zenodo.595308; https://doi.org/10.5281/zenodo.1115543; oai:zenodo.org:1115543

الاتاحة: https://doi.org/10.5281/zenodo.1115543

المؤلفون: Matthias König, Leandro Watanabe

Relation: https://github.com/matthiaskoenig/dfba/tree/v0.3.1; https://doi.org/10.5281/zenodo.1038148; https://doi.org/10.5281/zenodo.1045436; oai:zenodo.org:1045436

الاتاحة: https://doi.org/10.5281/zenodo.1045436

المؤلفون: Chris J. Myers, Leandro Watanabe

المصدر: ACS synthetic biology. 5(8)

مصطلحات موضوعية: 0301 basic medicine, Structure (mathematical logic), education.field_of_study, Markup language, Theoretical computer science, Computer science, Systems biology, Systems Biology, Population, Biomedical Engineering, 02 engineering and technology, General Medicine, Biochemistry, Genetics and Molecular Biology (miscellaneous), Models, Biological, 020202 computer hardware & architecture, Variety (cybernetics), 03 medical and health sciences, 030104 developmental biology, Chromosome (genetic algorithm), 0202 electrical engineering, electronic engineering, information engineering, Programming Languages, SBML, education, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::afb0a7cee5ed907c82c8f3a0ccdcb630
https://pubmed.ncbi.nlm.nih.gov/26912276

المؤلفون: Vasundra Touré, Matteo Cantarelli, Argyris Zardilis, Bertrand Moreau, Arthur P. Goldberg, Milenko Tokic, Pınar Pir, Dagmar Waltemath, Kieran Smallbone, Jens Hahn, Kambiz Baghalian, Daewon Lee, Naveen K. Aranganathan, Vijayalakshmi Chelliah, Arne T. Bittig, Namrata Tomar, Anna Zhukova, Florian Wendland, Marcus Krantz, Yan Zhu, Mahesh C. Sharma, Wolfram Liebermeister, Frank Bergmann, Joseph Cursons, Rafael S. Costa, Matthias König, Leandro Watanabe, Pedro Mendes, Natalie J. Stanford, James T. Yurkovich, Falk Schreiber, Harold F. Gómez, J. Kyle Medley, Martin Scharm, Vincent Knight-Schrijver, Denis Kazakiewicz, Ilya Kiselev, Jannis Uhlendorf, Daniel Alejandro Priego-Espinosa, Chris J. Myers, Sucheendra K. Palaniappan, Hojjat Naderi-Meshkin, Michael Hucka, Thawfeek M. Varusai, Nikita Mandrik, Markus Wolfien, Begum Alaybeyoglu, Paulo E. Pinto Burke, Daniel Federico Hernandez Gardiol, Audald Lloret-Villas, Tom Theile, Tuure Hameri, Christian Knüpfer, Jonathan R. Karr, Je-Hoon Song, Yin Hoon Chew, Tobias Czauderna

المصدر: IEEE transactions on bio-medical engineering

مصطلحات موضوعية: Male, 0301 basic medicine, Standards, Markup language, Computer science, Systems biology, Cytological Techniques, 0206 medical engineering, Biomedical Engineering, 02 engineering and technology, Models, Biological, Article, Education, Computational science, 03 medical and health sciences, Whole-cell modeling, Software, Humans, Computer Simulation, Community standards, business.industry, Systems Biology, Computational Biology, 3. Good health, 030104 developmental biology, computational biology, education, simulation, standards, systems biology, whole-cell (WC) modeling, Female, ddc:004, Whole cell, Software engineering, business, Simulation, 020602 bioinformatics

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d98a6b1a1a6703599a5ab9a1f9682138

المؤلفون: Sebastian Fröhlich, Andreas Dräger, Alex Thomas, Alexander Diamantikos, Clemens Wrzodek, Jakob Matthes, Bernhard O. Palsson, Roland Keller, Chris J. Myers, Nathan E. Lewis, Finja Wrzodek, Johannes Eichner, Eugen Netz, Michael Hucka, Harold F. Gómez, Leandro Watanabe, Florian Mittag, Jan Daniel Rudolph, Victor Kofia, Nicolas Rodriguez, Ibrahim Vazirabad, Nicolas Le Novère

المصدر: Rodriguez, N, Thomas, A, Watanabe, L, Vazirabad, I Y, Kofia, V, Gómez, H F, Mittag, F, Matthes, J, Rudolph, J, Wrzodek, F, Netz, E, Diamantikos, A, Eichner, J, Keller, R, Wrzodek, C, Fröhlich, S, Lewis, N, Myers, C J, Le Novère, N, Palsson, B, Hucka, M & Dräger, A 2015, ' JSBML 1.0: providing a smorgasbord of options to encode systems biology models ', Bioinformatics, vol. 31, no. 20, pp. 3383-6 . https://doi.org/10.1093/bioinformatics/btv341
Bioinformatics (Oxford, England), vol 31, iss 20
Bioinformatics

مصطلحات موضوعية: Statistics and Probability, Source code, Markup language, Java, Computer science, Bioinformatics, media_common.quotation_subject, 0206 medical engineering, 02 engineering and technology, Models, Biological, Biochemistry, Mathematical Sciences, World Wide Web, 03 medical and health sciences, Software, Documentation, Models, Information and Computing Sciences, Systems Biology Ontology, Computer Simulation, SBML, Molecular Biology, 030304 developmental biology, computer.programming_language, media_common, 0303 health sciences, business.industry, Systems Biology, BioModels Database, Biological Sciences, Biological, Applications Notes, Computer Science Applications, Computational Mathematics, Networking and Information Technology R&D, Computational Theory and Mathematics, Programming Languages, Software engineering, business, computer, 020602 bioinformatics

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f03d40eaec84d0ef3c2596076384c245
https://orbit.dtu.dk/en/publications/139c6c8a-b634-4f79-a667-1e92fd79adc1

المؤلفون: Leandro Watanabe, Chris J. Myers

المصدر: Frontiers in Bioengineering and Biotechnology
Frontiers in Bioengineering and Biotechnology, Vol 2 (2014)

مصطلحات موضوعية: Histology, Computer science, Process (engineering), lcsh:Biotechnology, Population, Biomedical Engineering, Bioengineering, Flattening, SBML, genetic circuits, discrete-event simulation, lcsh:TP248.13-248.65, Stochastic simulation, Methods Article, Discrete event simulation, education, Electronic circuit, education.field_of_study, Hierarchy (mathematics), Bioengineering and Biotechnology, stochastic simulation, hierarchical simulation, Algorithm, population modeling, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1885daed55ed47d52bed6b196ae0409b
https://doi.org/10.3389/fbioe.2014.00055