نتائج البحث - "Lamoureux, Cameron"

المصدر: Qiu , S , Wan , X , Liang , Y , Lamoureux , C , Akbari , A , Palsson , B O & Zielinski , D C 2024 , ' Inferred regulons are consistent with regulator binding sequences in E. coli ' , PLOS Computational Biology , vol. 20 , no. 1 , e1011824 . https://doi.org/10.1371/journal.pcbi.1011824

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/f2be4c2a-8377-4dfd-b0d7-e32b314fb3be

الاتاحة: https://orbit.dtu.dk/en/publications/f2be4c2a-8377-4dfd-b0d7-e32b314fb3be
https://doi.org/10.1371/journal.pcbi.1011824
https://backend.orbit.dtu.dk/ws/files/358195387/journal.pcbi.1011824.pdf

View record in BASE

7

Academic Journal

Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase.

المؤلفون: Hyun Gyu Lim, Ye Gao, Rychel, Kevin, Lamoureux, Cameron, Lou, Xuwen A., Palsson, Bernhard O.

المصدر: MSystems; Jan2025, Vol. 10 Issue 1, p1-17, 17p

Full Text Finder

8

Academic Journal

A multi-scale expression and regulation knowledge base for Escherichia coli

المؤلفون: Lamoureux, Cameron R., Decker, Katherine T., Sastry, Anand V., Rychel, Kevin, Gao, Ye, McConn, John Luke, Zielinski, Daniel C., Palsson, Bernhard O.

المصدر: Lamoureux , C R , Decker , K T , Sastry , A V , Rychel , K , Gao , Y , McConn , J L , Zielinski , D C & Palsson , B O 2023 , ' A multi-scale expression and regulation knowledge base for Escherichia coli ' , Nucleic Acids Research , vol. 51 , no. 19 , gkad750 , pp. 10176-10193 . https://doi.org/10.1093/nar/gkad750

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/352ff50b-749e-457e-9789-6e6bb69038c0

الاتاحة: https://orbit.dtu.dk/en/publications/352ff50b-749e-457e-9789-6e6bb69038c0
https://doi.org/10.1093/nar/gkad750
https://backend.orbit.dtu.dk/ws/files/341098812/gkad750.pdf

View record in BASE

9

Academic Journal

Machine learning uncovers the Pseudomonas syringae transcriptome in microbial communities and during infection

المؤلفون: Bajpe, Heera, Rychel, Kevin, Lamoureux, Cameron R., Sastry, Anand V., Palsson, Bernhard O.

المصدر: Bajpe , H , Rychel , K , Lamoureux , C R , Sastry , A V & Palsson , B O 2023 , ' Machine learning uncovers the Pseudomonas syringae transcriptome in microbial communities and during infection ' , mSystems , vol. 8 , no. 5 , e00437-23 . https://doi.org/10.1128/msystems.00437-23

مصطلحات موضوعية: Pseudomonas syringae, Independent component analysis, Transcriptomics, Gene regulation, Data mining, Microbial interactions

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/a17c2f12-4b6b-4624-bb7f-263f85008cf2

الاتاحة: https://orbit.dtu.dk/en/publications/a17c2f12-4b6b-4624-bb7f-263f85008cf2
https://doi.org/10.1128/msystems.00437-23
https://backend.orbit.dtu.dk/ws/files/340605834/bajpe-et-al-2023-machine-learning-uncovers-the-pseudomonas-syringae-transcriptome-in-microbial-communities-and-during.pdf

View record in BASE

10

Academic Journal

Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins

المؤلفون: Hirose, Yujiro, Poudel, Saugat, Sastry, Anand V., Rychel, Kevin, Lamoureux, Cameron R., Szubin, Richard, Zielinski, Daniel C., Lim, Hyun Gyu, Menon, Nitasha D., Bergsten, Helena, Uchiyama, Satoshi, Hanada, Tomoki, Kawabata, Shigetada, Palsson, Bernhard O., Nizet, Victor

المساهمون: Zhang, Xiao-Hua, Japan Agency for Medical Research and Development, MEXT | Japan Society for the Promotion of Science

المصدر: mSystems ; volume 8, issue 3 ; ISSN 2379-5077

الاتاحة: http://dx.doi.org/10.1128/msystems.00247-23
https://journals.asm.org/doi/pdf/10.1128/msystems.00247-23

View record in BASE

11

Multi-scale analysis of sequence and regulatory information in Escherichia coli

المؤلفون: Lamoureux, Cameron

مصطلحات موضوعية: Bioinformatics, Systematic biology, Microbiology, Escherichia coli, Genomics, Machine learning, Multiple sequence alignment, RNA-seq, Transcriptional regulatory network

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/65c6w2x2

View record in eScholarship

12

Academic Journal

iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia.

المؤلفون: Sastry, Anand V., Yuan, Yuan, Poudel, Saugat, Rychel, Kevin, Yoo, Reo, Lamoureux, Cameron R., Li, Gaoyuan, Burrows, Joshua T., Chauhan, Siddharth, Haiman, Zachary B., Al Bulushi, Tahani, Seif, Yara, Palsson, Bernhard O., Zielinski, Daniel C.

المصدر: PLoS Computational Biology; 10/23/2024, Vol. 20 Issue 10, p1-15, 15p

مصطلحات موضوعية: INDEPENDENT component analysis, GENE regulatory networks, GENE expression, TRANSCRIPTION factors, RNA polymerases

Full Text Finder

13

Academic Journal

Machine Learning of All Mycobacterium tuberculosis H37Rv RNAseq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection

المؤلفون: Yoo, Reo, Rychel, Kevin, Poudel, Saugat, Al-Bulushi, Tahani, Yuan, Yuan, Chauhan, Siddharth, Lamoureux, Cameron, Palsson, Bernhard O., Sastry, Anand

المصدر: Yoo , R , Rychel , K , Poudel , S , Al-Bulushi , T , Yuan , Y , Chauhan , S , Lamoureux , C , Palsson , B O & Sastry , A 2022 , ' Machine Learning of All Mycobacterium tuberculosis H37Rv RNAseq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection ' , mSphere , vol. 7 , no. 2 . https://doi.org/10.1128/msphere.00033-22

مصطلحات موضوعية: Gene regulation, Independent component analysis, Machine learning, Mycobacterium tuberculosis, Transcriptomics, /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being, name=SDG 3 - Good Health and Well-being

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/733eebfb-0578-492a-a4b5-79aadd59466a

الاتاحة: https://orbit.dtu.dk/en/publications/733eebfb-0578-492a-a4b5-79aadd59466a
https://doi.org/10.1128/msphere.00033-22
https://backend.orbit.dtu.dk/ws/files/298010468/msphere.00033_22.pdf

View record in BASE

14

Academic Journal

Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius

المؤلفون: Chauhan, Siddharth M., Poudel, Saugat, Rychel, Kevin, Lamoureux, Cameron, Yoo, Reo, Al Bulushi, Tahani, Yuan, Yuan, Palsson, Bernhard O., Sastry, Anand V.

المصدر: Chauhan , S M , Poudel , S , Rychel , K , Lamoureux , C , Yoo , R , Al Bulushi , T , Yuan , Y , Palsson , B O & Sastry , A V 2021 , ' Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius ' , Frontiers in Microbiology , vol. 12 , 753521 . https://doi.org/10.3389/fmicb.2021.753521

مصطلحات موضوعية: Archaea, Independent component analysis (ICA), Machine learning, Regulon discovery, Systems biology, Thermophile, Transcriptional regulation, Transcriptional regulatory network (TRN)

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/d8aa07b8-b6e8-49d8-a5a8-71c3a7a72511

الاتاحة: https://orbit.dtu.dk/en/publications/d8aa07b8-b6e8-49d8-a5a8-71c3a7a72511
https://doi.org/10.3389/fmicb.2021.753521
https://backend.orbit.dtu.dk/ws/files/267295539/fmicb_12_753521.pdf

View record in BASE

15

Academic Journal

Optimal dimensionality selection for independent component analysis of transcriptomic data

المؤلفون: McConn, John Luke, Lamoureux, Cameron R., Poudel, Saugat, Palsson, Bernhard O., Sastry, Anand V.

المساهمون: Novo Nordisk Fonden, National Institute of Allergy and Infectious Diseases

المصدر: BMC Bioinformatics ; volume 22, issue 1 ; ISSN 1471-2105

الاتاحة: http://dx.doi.org/10.1186/s12859-021-04497-7
https://link.springer.com/content/pdf/10.1186/s12859-021-04497-7.pdf
https://link.springer.com/article/10.1186/s12859-021-04497-7/fulltext.html

View record in BASE

16

Academic Journal

The Bitome: digitized genomic features reveal fundamental genome organization

المؤلفون: Lamoureux, Cameron R., Choudhary, Kumari Sonal, King, Zachary A., Sandberg, Troy E., Gao, Ye, Sastry, Anand V., Phaneuf, Patrick V., Choe, Donghui, Cho, Byung-Kwan, Palsson, Bernhard O.

المصدر: Lamoureux , C R , Choudhary , K S , King , Z A , Sandberg , T E , Gao , Y , Sastry , A V , Phaneuf , P V , Choe , D , Cho , B-K & Palsson , B O 2020 , ' The Bitome: digitized genomic features reveal fundamental genome organization ' , Nucleic Acids Research , vol. 48 , no. 18 , gkaa774 , pp. 10157-10163 . https://doi.org/10.1093/nar/gkaa774

وصف الملف: application/pdf

Relation: https://orbit.dtu.dk/en/publications/13470ca5-ebbf-4112-a78b-a8feee0d7a0a

الاتاحة: https://orbit.dtu.dk/en/publications/13470ca5-ebbf-4112-a78b-a8feee0d7a0a
https://doi.org/10.1093/nar/gkaa774
https://backend.orbit.dtu.dk/ws/files/236393945/gkaa774.pdf

View record in BASE