المؤلفون: Paganini, Julian A., Kerkvliet, Jesse J., Vader, Lisa, Plantinga, Nienke L., Meneses, Rodrigo, Corander, Jukka, Willems, Rob J. L., Alonso, Sergio Arredondo, Schürch, Anita C.

المصدر: 2057-5858.

Relation: http://hdl.handle.net/10852/115093; 2255812; Microbial Genomics; 10; http://dx.doi.org/10.1099/mgen.0.001193

الاتاحة: http://hdl.handle.net/10852/115093
https://doi.org/10.1099/mgen.0.001193

المؤلفون: Kerkvliet, Jesse J., Bossers, Alex, Kers, Jannigje G., Meneses, Rodrigo, Willems, Rob, Schürch, Anita C.

المصدر: PeerJ 12 (2024) ; ISSN: 2167-8359

مصطلحات موضوعية: Bacteria, Bacterial, Computational biology, Drug resistance, Metagenomics, Plasmid

وصف الملف: application/pdf

Relation: https://edepot.wur.nl/650447

الاتاحة: https://research.wur.nl/en/publications/metagenomic-assembly-is-the-main-bottleneck-in-the-identification
https://doi.org/10.7717/peerj.16695

المؤلفون: Paganini, Julian A, Kerkvliet, Jesse J, Vader, Lisa, Plantinga, Nienke L, Meneses, Rodrigo, Corander, Jukka, Willems, Rob J L, Arredondo-Alonso, Sergio, Schürch, Anita C

المساهمون: MMB Research line 2, Infection & Immunity

مصطلحات موضوعية: Anti-Bacterial Agents/pharmacology, Drug Resistance, Microbial, Escherichia coli/genetics, High-Throughput Nucleotide Sequencing, Plasmids/genetics, WGS, assembly graph, Escherichia coli, plasmids, short reads, antibiotic resistance, bioinformatics, Illumina, Genetics, Molecular Biology, Epidemiology, Microbiology, Journal Article

وصف الملف: application/pdf

Relation: https://dspace.library.uu.nl/handle/1874/451361

الاتاحة: https://dspace.library.uu.nl/handle/1874/451361

المؤلفون: Paganini, Julian A., Kerkvliet, Jesse J., Vader, Lisa, Plantinga, Nienke L., Meneses, Rodrigo, Corander, Jukka, Willems, Rob J.L., Arredondo-Alonso, Sergio, Schürch, Anita C.

المساهمون: Helsinki Institute for Information Technology, Jukka Corander / Principal Investigator, Department of Mathematics and Statistics

مصطلحات موضوعية: antibiotic resistance, assembly graph, bioinformatics, Escherichia coli, Illumina, plasmids, short reads, WGS, Statistics and probability

وصف الملف: application/pdf

Relation: This work was partially supported by ZonMW (The Netherlands) [541 003 005 to A.C.S.], the Netherlands Centre of One Health (NCOH Complex systems and metagenomics) and by DiSSeMINATE (LSHM19138). This collaboration project is co-funded by the PPP Allowance made available by Health-Holland, Top Sector Life Sciences and Health, to stimulate public–private partnerships. This work was partially supported by the European Union Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions (grant No. 801133 to S.A.-A). This work was partially supported by ZonMW (The Netherlands) [541 003 005 to A.C.S.], the Netherlands Centre of One Health (NCOH Complex systems and metagenomics) and by DiSSeMINATE (LSHM19138). This collaboration project is co-funded by the PPP Allowance made available by Health~Holland, Top Sector Life Sciences and Health, to stimulate public–private partnerships. This work was partially supported by the European Union Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions (grant No. 801133 to S.A.-A).; Paganini , J A , Kerkvliet , J J , Vader , L , Plantinga , N L , Meneses , R , Corander , J , Willems , R J L , Arredondo-Alonso , S & Schürch , A C 2024 , ' PlasmidEC and gplas2 : an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli ' , Microbial Genomics , vol. 10 , no. 2 , 001193 . https://doi.org/10.1099/mgen.0.001193; http://hdl.handle.net/10138/574034; bf2ada74-54a0-4913-a197-d82eb0d15e8c; 85185688030; 001206004700004

الاتاحة: http://hdl.handle.net/10138/574034

المؤلفون: MMB Research line 2, Infection & Immunity, Paganini, Julian A, Kerkvliet, Jesse J, Vader, Lisa, Plantinga, Nienke L, Meneses, Rodrigo, Corander, Jukka, Willems, Rob J L, Arredondo-Alonso, Sergio, Schürch, Anita C

URL: https://doi.org/10.1099/mgen.0.001193
http://hdl.handle.net/1874/451361
http://www.scopus.com/inward/record.url?scp=85185688030&partnerID=8YFLogxK
2057-5858
Microbial genomics
10
2
001193

المؤلفون: IRAS OH Epidemiology Microbial Agents, IRAS – One Health Microbial, Kerkvliet, Jesse J., Bossers, Alex, Kers, Jannigje G., Meneses, Rodrigo, Willems, Rob J L, Schürch, Anita C.

URL: https://doi.org/10.7717/peerj.16695
http://hdl.handle.net/1874/438092
https://dspace.library.uu.nl/handle/1874/438092
http://www.scopus.com/inward/record.url?scp=85184306715&partnerID=8YFLogxK
2167-8359
PeerJ
12
e16695