المؤلفون: Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping

المصدر: Nature. 605(7909)

مصطلحات موضوعية: ENCODE Project Consortium, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/13j4f1fx
https://escholarship.org/content/qt13j4f1fx/qt13j4f1fx.pdf

المؤلفون: Keller, Cheryl, Wixom, Alexander, Heuston, Elisabeth, Giardine, Belinda, Hsiung, Chris, Long, Maria, Miller, Amber, Anderson, Stacie, Cockburn, April, Blobel, Gerd, Bodine, David, Hardison, Ross

المصدر: G3: Genes, Genomes, Genetics. 11(6)

مصطلحات موضوعية: CTCF, ChIP-seq, TAL1, chromatin immunoprecipitation, genomics, hematopoiesis, hematopoietic progenitors, reproducibility, sonication, Mice, Animals, Chromatin Immunoprecipitation Sequencing, Chromatin, Reproducibility of Results, Retrospective Studies, High-Throughput Nucleotide Sequencing, Sequence Analysis, DNA, Transcription Factors

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5j91n0k7
https://escholarship.org/content/qt5j91n0k7/qt5j91n0k7.pdf

المؤلفون: Xiang, Guanjue, He, Xi, Giardine, Belinda M, Isaac, Kathryn J, Taylor, Dylan J, McCoy, Rajiv C, Jansen, Camden, Keller, Cheryl A, Wixom, Alexander Q, Cockburn, April, Miller, Amber, Qi, Qian, He, Yanghua, Li, Yichao, Lichtenberg, Jens, Heuston, Elisabeth F, Anderson, Stacie M, Luan, Jing, Vermunt, Marit W, Yue, Feng, Sauria, Michael EG, Schatz, Michael C, Taylor, James, Göttgens, Berthold, Hughes, Jim R, Higgs, Douglas R, Weiss, Mitchell J, Cheng, Yong, Blobel, Gerd A, Bodine, David M, Zhang, Yu, Li, Qunhua, Mahony, Shaun, Hardison, Ross C

مصطلحات موضوعية: Animals, Mice, Humans, Epigenesis, Genetic, Epigenome, Species Specificity, Blood Cells, Regulatory Sequences, Nucleic Acid, Gene Expression Regulation, Epigenomics

وصف الملف: application/pdf

Relation: https://www.repository.cam.ac.uk/handle/1810/370131; https://doi.org/10.17863/CAM.109660

الاتاحة: https://www.repository.cam.ac.uk/handle/1810/370131
https://doi.org/10.17863/CAM.109660

المؤلفون: Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping

المصدر: Nature. 583(7818)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, 1.1 Normal biological development and functioning, Animals, Chromatin, DNA, DNA Footprinting, DNA Methylation, DNA Replication Timing, Databases, Genetic, Deoxyribonuclease I, Genome, Genome, Human, Genomics, Histones, Humans, Mice, Mice, Transgenic, Molecular Sequence Annotation, RNA-Binding Proteins, Registries, Regulatory Sequences, Nucleic Acid, Transcription, Genetic, Transposases, ENCODE Project Consortium, General Science & Technology

URL الوصول: https://escholarship.org/uc/item/5266s2w5

المؤلفون: ENCODE Project Consortium, Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping

المصدر: Nature. 583(7818)

مصطلحات موضوعية: ENCODE Project Consortium, Chromatin, Animals, Mice, Transgenic, Humans, Mice, Deoxyribonuclease I, Transposases, RNA-Binding Proteins, Histones, DNA, Registries, DNA Footprinting, Genomics, DNA Methylation, DNA Replication Timing, Transcription, Genetic, Regulatory Sequences, Nucleic Acid, Genome, Genome, Human, Databases, Genetic, Molecular Sequence Annotation, Human Genome, HIV/AIDS, Vaccine Related, Biotechnology, Genetics, Immunization, Vaccine Related (AIDS), Prevention, 1.1 Normal biological development and functioning, Generic health relevance, General Science & Technology

URL الوصول: https://escholarship.org/uc/item/5266s2w5

المؤلفون: Xiang, Guanjue, Giardine, Belinda, An, Lin, Sun, Chen, Keller, Cheryl A., Heuston, Elisabeth F., Anderson, Stacie M., Kirby, Martha, Bodine, David, Zhang, Yu, Hardison, Ross C.

المساهمون: National Institutes of Health, National Human Genome Research Institute

المصدر: BMC Bioinformatics ; volume 24, issue 1 ; ISSN 1471-2105

الاتاحة: http://dx.doi.org/10.1186/s12859-023-05223-1
https://link.springer.com/content/pdf/10.1186/s12859-023-05223-1.pdf
https://link.springer.com/article/10.1186/s12859-023-05223-1/fulltext.html

المؤلفون: Vermunt, Marit W., Luan, Jing, Zhang, Zhe, Thrasher, A. Josephine, Huang, Anran, Saari, Megan S., Khandros, Eugene, Beagrie, Robert A., Zhang, Shiping, Vemulamada, Pranay, Brilleman, Matilda, Lee, Kiwon, Yano, Jennifer A., Giardine, Belinda M., Keller, Cheryl A., Hardison, Ross C., Blobel, Gerd A.

المساهمون: National Institutes of Health, American Heart Association, European Molecular Biology Organization, Children's Hospital of Philadelphia, Nederlandse Organisatie voor Wetenschappelijk Onderzoek

المصدر: Molecular Cell ; volume 83, issue 5, page 715-730.e6 ; ISSN 1097-2765

الاتاحة: http://dx.doi.org/10.1016/j.molcel.2023.02.006
https://api.elsevier.com/content/article/PII:S1097276523000850?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1097276523000850?httpAccept=text/plain

المؤلفون: Xiang, Guanjue, He, Xi, Giardine, Belinda M, Weaver, Kathryn J, Taylor, Dylan J, McCoy, Rajiv C, Jansen, Camden, Keller, Cheryl A, Wixom, Alexander Q, Cockburn, April, Miller, Amber, Qi, Qian, He, Yanghua, Li, Yichao, Lichtenberg, Jens, Heuston, Elisabeth F, Anderson, Stacie M, Luan, Jing, Vermunt, Marit W, Yue, Feng, Sauria, Michael EG, Schatz, Michael C, Taylor, James, Göttgens, Berthold, Hughes, Jim R, Higgs, Douglas R, Weiss, Mitchell J, Cheng, Yong, Blobel, Gerd A, Bodine, David, Zhang, Yu, Li, Qunhua, Mahony, Shaun, Hardison, Ross C

مصطلحات موضوعية: epigenetics, human, mouse

وصف الملف: application/pdf

Relation: https://repository.cshl.edu/id/eprint/41054/1/2023_Xiang_Cross-species_regulatory_landscapes_and_elements.pdf; Xiang, Guanjue, He, Xi, Giardine, Belinda M, Weaver, Kathryn J, Taylor, Dylan J, McCoy, Rajiv C, Jansen, Camden, Keller, Cheryl A, Wixom, Alexander Q, Cockburn, April, Miller, Amber, Qi, Qian, He, Yanghua, Li, Yichao, Lichtenberg, Jens, Heuston, Elisabeth F, Anderson, Stacie M, Luan, Jing, Vermunt, Marit W, Yue, Feng, Sauria, Michael EG, Schatz, Michael C, Taylor, James, Göttgens, Berthold, Hughes, Jim R, Higgs, Douglas R, Weiss, Mitchell J, Cheng, Yong, Blobel, Gerd A, Bodine, David, Zhang, Yu, Li, Qunhua, Mahony, Shaun, Hardison, Ross C (April 2023) Cross-species regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes. bioRxiv.

الاتاحة: https://repository.cshl.edu/id/eprint/41054/
https://repository.cshl.edu/id/eprint/41054/1/2023_Xiang_Cross-species_regulatory_landscapes_and_elements.pdf
https://www.ncbi.nlm.nih.gov/pubmed/37066352
https://doi.org/10.1101/2023.04.02.535219

المؤلفون: Koch, Hillary, Keller, Cheryl A., Xiang, Guanjue, Giardine, Belinda, Zhang, Feipeng, Wang, Yicheng, Hardison, Ross C., Li, Qunhua

المصدر: Nature Communications ; volume 13, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-022-34360-z
https://www.nature.com/articles/s41467-022-34360-z.pdf
https://www.nature.com/articles/s41467-022-34360-z

المؤلفون: Lam, Jessica C., Aboreden, Nicholas G., Midla, Susannah C., Wang, Siqing, Huang, Anran, Keller, Cheryl A., Giardine, Belinda, Henderson, Kate A., Hardison, Ross C., Zhang, Haoyue, Blobel, Gerd A.

المصدر: Nature Genetics; September 2024, Vol. 56 Issue: 9 p1938-1952, 15p

المؤلفون: Dogan, Nergiz, Wu, Weisheng, Morrissey, Christapher, Chen, Kuan-Bei, Stonestrom, Aaron, Long, Maria, Keller, Cheryl, Cheng, Yong, Jain, Deepti, Visel, Axel, Pennacchio, Len, Weiss, Mitchell, Blobel, Gerd, Hardison, Ross

مصطلحات موضوعية: Enhancer assay, Functional genomics, GATA1, Gene regulation, Histone modifications, TAL1

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8mb3s7f7
https://escholarship.org/content/qt8mb3s7f7/qt8mb3s7f7.pdf

المؤلفون: Cheng, Yong, Ma, Zhihai, Kim, Bong-Hyun, Wu, Weisheng, Cayting, Philip, Boyle, Alan, Sundaram, Vasavi, Xing, Xiaoyun, Dogan, Nergiz, Li, Jingjing, Euskirchen, Ghia, Lin, Shin, Lin, Yiing, Visel, Axel, Kawli, Trupti, Yang, Xinqiong, Patacsil, Dorrelyn, Keller, Cheryl, Giardine, Belinda, Kundaje, Anshul, Wang, Ting, Pennacchio, Len, Weng, Zhiping, Hardison, Ross, Snyder, Michael

المصدر: Nature: New biology. 515(7527)

مصطلحات موضوعية: Animals, Cell Line, Chromatin, Conserved Sequence, Enhancer Elements, Genetic, Genome, Genomics, Humans, Mice, Polymorphism, Single Nucleotide, Regulatory Sequences, Nucleic Acid, Transcription Factors

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5066h1n9
https://escholarship.org/content/qt5066h1n9/qt5066h1n9.pdf

المؤلفون: Grevet, Jeremy D., Lan, Xianjiang, Hamagami, Nicole, Edwards, Christopher R., Sankaranarayanan, Laavanya, Ji, Xinjun, Bhardwaj, Saurabh K., Face, Carolyne J., Posocco, David F., Abdulmalik, Osheiza, Keller, Cheryl A., Giardine, Belinda, Sidoli, Simone, Garcia, Ben A., Chou, Stella T., Liebhaber, Stephen A., Hardison, Ross C., Shi, Junwei, Blobel, Gerd A.

المصدر: Science, 2018 Jul . 361(6399), 285-290.

URL الوصول: https://www.jstor.org/stable/26498996

المؤلفون: Aboreden, Nicholas G, Lam, Jessica C, Goel, Viraat Y, Wang, Siqing, Wang, Xiaokang, Midla, Susannah C, Quijano, Alma, Keller, Cheryl A, Giardine, Belinda M, Hardison, Ross C, Zhang, Haoyue, Hansen, Anders S, Blobel, Gerd A

المصدر: Mol Cell ; ISSN:1097-4164

مصطلحات موضوعية: chromatin architecture, enhancer, LDB1, looping, CTCF, cohesin, YY1, cell cycle, hub, LMO2

Relation: https://doi.org/10.1016/j.molcel.2024.11.037; https://pubmed.ncbi.nlm.nih.gov/39721581

الاتاحة: https://doi.org/10.1016/j.molcel.2024.11.037
https://pubmed.ncbi.nlm.nih.gov/39721581

المؤلفون: Zhang, Haoyue, Lam, Jessica, Zhang, Di, Lan, Yemin, Vermunt, Marit W., Keller, Cheryl A., Giardine, Belinda, Hardison, Ross C., Blobel, Gerd A.

المساهمون: U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases

المصدر: Nature Communications ; volume 12, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-021-25418-5
https://www.nature.com/articles/s41467-021-25418-5.pdf
https://www.nature.com/articles/s41467-021-25418-5

المؤلفون: Keller, Cheryl A, Wixom, Alexander Q, Heuston, Elisabeth F, Giardine, Belinda, Hsiung, Chris C -S, Long, Maria R, Miller, Amber, Anderson, Stacie M, Cockburn, April, Blobel, Gerd A, Bodine, David M, Hardison, Ross C

المساهمون: Andrews, B J, National Institutes of Health, NIDDK, NHGRI

المصدر: G3 Genes|Genomes|Genetics ; volume 11, issue 6 ; ISSN 2160-1836

مصطلحات موضوعية: Genetics (clinical), Genetics, Molecular Biology

الاتاحة: http://dx.doi.org/10.1093/g3journal/jkab101
http://academic.oup.com/g3journal/advance-article-pdf/doi/10.1093/g3journal/jkab101/38120540/jkab101.pdf
http://academic.oup.com/g3journal/article-pdf/11/6/jkab101/40518261/jkab101.pdf

المؤلفون: Lan, Xianjiang, Ren, Ren, Feng, Ruopeng, Ly, Lana C., Lan, Yemin, Zhang, Zhe, Aboreden, Nicholas, Qin, Kunhua, Horton, John R., Grevet, Jeremy D., Mayuranathan, Thiyagaraj, Abdulmalik, Osheiza, Keller, Cheryl A., Giardine, Belinda, Hardison, Ross C., Crossley, Merlin, Weiss, Mitchell J., Cheng, Xiaodong, Shi, Junwei, Blobel, Gerd A.

المساهمون: Foundation for the National Institutes of Health, Cancer Prevention and Research Institute of Texas

المصدر: Molecular Cell ; volume 81, issue 2, page 239-254.e8 ; ISSN 1097-2765

الاتاحة: http://dx.doi.org/10.1016/j.molcel.2020.11.006
https://api.elsevier.com/content/article/PII:S109727652030784X?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S109727652030784X?httpAccept=text/plain

المؤلفون: Luan, Jing, Xiang, Guanjue, Gómez-García, Pablo Aurelio, Tome, Jacob M., Zhang, Zhe, Vermunt, Marit W., Zhang, Haoyue, Huang, Anran, Keller, Cheryl A., Giardine, Belinda M., Zhang, Yu, Lan, Yemin, Lis, John T., Lakadamyali, Melike, Hardison, Ross C., Blobel, Gerd A.

المساهمون: NIH

المصدر: Cell Reports ; volume 34, issue 8, page 108783 ; ISSN 2211-1247

الاتاحة: http://dx.doi.org/10.1016/j.celrep.2021.108783
https://api.elsevier.com/content/article/PII:S2211124721000966?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2211124721000966?httpAccept=text/plain

المؤلفون: Xiang, Guanjue, Keller, Cheryl A, Giardine, Belinda, An, Lin, Li, Qunhua, Zhang, Yu, Hardison, Ross C

المساهمون: National Institutes of Health

المصدر: Nucleic Acids Research ; volume 48, issue 8, page e43-e43 ; ISSN 0305-1048 1362-4962

الاتاحة: http://dx.doi.org/10.1093/nar/gkaa105
http://academic.oup.com/nar/article-pdf/48/8/e43/33150651/gkaa105.pdf

المؤلفون: Hardison, Ross C., Zhang, Yu, Keller, Cheryl A., Xiang, Guanjue, Heuston, Elisabeth F., An, Lin, Lichtenberg, Jens, Giardine, Belinda M., Bodine, David, Mahony, Shaun, Li, Qunhua, Yue, Feng, Weiss, Mitchell J., Blobel, Gerd A., Taylor, James, Hughes, Jim, Higgs, Douglas R., Göttgens, Berthold

المساهمون: National Cancer Institute, National Institute of Diabetes and Digestive and Kidney Diseases, National Institute of General Medical Sciences

المصدر: IUBMB Life ; volume 72, issue 1, page 27-38 ; ISSN 1521-6543 1521-6551

الاتاحة: http://dx.doi.org/10.1002/iub.2195
https://onlinelibrary.wiley.com/doi/pdf/10.1002/iub.2195
https://onlinelibrary.wiley.com/doi/full-xml/10.1002/iub.2195
https://iubmb.onlinelibrary.wiley.com/doi/pdf/10.1002/iub.2195