المؤلفون: Jessen V. Bredeson, Jessica B. Lyons, Ibukun O. Oniyinde, Nneka R. Okereke, Olufisayo Kolade, Ikenna Nnabue, Christian O. Nwadili, Eva Hřibová, Matthew Parker, Jeremiah Nwogha, Shengqiang Shu, Joseph Carlson, Robert Kariba, Samuel Muthemba, Katarzyna Knop, Geoffrey J. Barton, Anna V. Sherwood, Antonio Lopez-Montes, Robert Asiedu, Ramni Jamnadass, Alice Muchugi, David Goodstein, Chiedozie N. Egesi, Jonathan Featherston, Asrat Asfaw, Gordon G. Simpson, Jaroslav Doležel, Prasad S. Hendre, Allen Van Deynze, Pullikanti Lava Kumar, Jude E. Obidiegwu, Ranjana Bhattacharjee, Daniel S. Rokhsar

المصدر: Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/eb35eea4e0664d9da945b73fc5c47ae6

المؤلفون: Matthew T Parker, Beth K Soanes, Jelena Kusakina, Antoine Larrieu, Katarzyna Knop, Nisha Joy, Friedrich Breidenbach, Anna V Sherwood, Geoffrey J Barton, Sebastian M Fica, Brendan H Davies, Gordon G Simpson

المصدر: eLife, Vol 11 (2022)

مصطلحات موضوعية: splicing, epitranscriptome, m6A, flowering time, ambient temperature, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/78808; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/87994dd6570b469ebf3bf9d348881607

المؤلفون: Matthew T. Parker, Katarzyna Knop, Geoffrey J. Barton, Gordon G. Simpson

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)

مصطلحات موضوعية: Splicing, Long-read sequencing, Spliced alignment, RNA-seq, Gene expression, Transcriptome assembly, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/006bdd1da0bc45ca800a01910114042d

المؤلفون: Matthew T Parker, Katarzyna Knop, Vasiliki Zacharaki, Anna V Sherwood, Daniel Tomé, Xuhong Yu, Pascal GP Martin, Jim Beynon, Scott D Michaels, Geoffrey J Barton, Gordon G Simpson

المصدر: eLife, Vol 10 (2021)

مصطلحات موضوعية: NLR, nanopore, direct RNA sequencing, spen, m6A, alternative polyadenylation, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/65537; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/a93848093b644c9b91f021cb3118bfcf

المؤلفون: Matthew T. Parker (10217926), Katarzyna Knop (4989041), Geoffrey J. Barton (10217929), Gordon G. Simpson (10217932)

مصطلحات موضوعية: Genetics, Splicing, Long-read sequencing, Spliced alignment, RNA-seq, Gene expression, Transcriptome assembly, Machine learning, Nanopore sequencing

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_2passtools_two-pass_alignment_using_machine-learning-filtered_splice_junctions_increases_the_accuracy_of_intron_detection_in_long-read_RNA_sequencing/14140570

الاتاحة: https://doi.org/10.6084/m9.figshare.14140570.v1

المؤلفون: Matthew T. Parker (10217926), Katarzyna Knop (4989041), Geoffrey J. Barton (10217929), Gordon G. Simpson (10217932)

مصطلحات موضوعية: Genetics, Splicing, Long-read sequencing, Spliced alignment, RNA-seq, Gene expression, Transcriptome assembly, Machine learning, Nanopore sequencing

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_2passtools_two-pass_alignment_using_machine-learning-filtered_splice_junctions_increases_the_accuracy_of_intron_detection_in_long-read_RNA_sequencing/14140567

الاتاحة: https://doi.org/10.6084/m9.figshare.14140567.v1

المؤلفون: Matthew T Parker, Katarzyna Knop, Anna V Sherwood, Nicholas J Schurch, Katarzyna Mackinnon, Peter D Gould, Anthony JW Hall, Geoffrey J Barton, Gordon G Simpson

المصدر: eLife, Vol 9 (2020)

مصطلحات موضوعية: epitranscriptome, RNA, nanopore, polyadenylation, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/49658; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/234b39e8791343c79647b842a58df6c2

المؤلفون: Matthew T Parker, Beth K Soanes, Jelena Kusakina, Antoine Larrieu, Katarzyna Knop, Nisha Joy, Friedrich Breidenbach, Anna V Sherwood, Geoffrey J Barton, Sebastian M Fica, Brendan H Davies, Gordon G Simpson

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::6660e20ea2e0f16522a578694ed334a8
https://doi.org/10.7554/elife.78808.sa2

المؤلفون: Gordon G. Simpson, Katarzyna Knop, Matthew T. Parker

المصدر: The Biochemist. 42:26-30

مصطلحات موضوعية: RNA, Computational biology, Biology, Plant biology, General Biochemistry, Genetics and Molecular Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::1a2c04b39deac88902b52c43f01089e4
https://doi.org/10.1042/bio20200046

المؤلفون: Matthew T, Parker, Beth K, Soanes, Jelena, Kusakina, Antoine, Larrieu, Katarzyna, Knop, Nisha, Joy, Friedrich, Breidenbach, Anna V, Sherwood, Geoffrey J, Barton, Sebastian M, Fica, Brendan H, Davies, Gordon G, Simpson

المصدر: eLife. 11

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::b38a9b4173f9a104a40bdace3b7a9551
https://pubmed.ncbi.nlm.nih.gov/36409063

المؤلفون: Jessen V., Bredeson, Jessica B., Lyons, Ibukun O., Oniyinde, Nneka R., Okereke, Olufisayo, Kolade, Ikenna, Nnabue, Christian O., Nwadili, Eva, Hřibová, Matthew, Parker, Jeremiah, Nwogha, Shengqiang, Shu, Joseph, Carlson, Robert, Kariba, Samuel, Muthemba, Katarzyna, Knop, Geoffrey J., Barton, Anna V., Sherwood, Antonio, Lopez-Montes, Robert, Asiedu, Ramni, Jamnadass, Alice, Muchugi, David, Goodstein, Chiedozie N., Egesi, Jonathan, Featherston, Asrat, Asfaw, Gordon G., Simpson, Jaroslav, Doležel, Prasad S., Hendre, Allen, Van Deynze, Pullikanti Lava, Kumar, Jude E., Obidiegwu, Ranjana, Bhattacharjee, Daniel S., Rokhsar

مصطلحات الفهرس: Journal Article, VoR

URL: http://id.nii.ac.jp/1394/00002372/
https://oist.repo.nii.ac.jp/?action=repository_action_common_download&item_id=2633&item_no=1&attribute_id=22&file_no=1
https://doi.org/10.1038/s41467-022-29114-w
https://doi.org/10.1038/s41467-022-29114-w

المؤلفون: Pascal G. P. Martin, Gordon G. Simpson, Katarzyna Knop, Xuhong Yu, Scott D. Michaels, Daniel F. A. Tomé, Vasiliki Zacharaki, Jim Beynon, Geoffrey J. Barton, Matthew T. Parker, Anna V. Sherwood

المصدر: bioRxiv
BioRxiv
eLife, Vol 10 (2021)

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Polyadenylation, QH301-705.5, Science, spen, Computational biology, Plant disease resistance, 01 natural sciences, Genome, General Biochemistry, Genetics and Molecular Biology, NLR, 03 medical and health sciences, Immune system, Gene expression, Arabidopsis thaliana, nanopore, Biology (General), Evolutionary dynamics, Gene, 030304 developmental biology, 0303 health sciences, direct RNA sequencing, General Immunology and Microbiology, biology, General Neuroscience, alternative polyadenylation, fungi, RNA, m6A, General Medicine, Gene Annotation, biology.organism_classification, 030104 developmental biology, Medicine, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be398b2f7fa67ca33eeece24cd52a4d6
https://doi.org/10.7554/elife.65537

المؤلفون: Jessica B. Lyons, Joseph W. Carlson, Eva Hřibová, Ranjana Bhattacharjee, Nwadili Co, Van Deynze A, Okereke Nr, Alice Muchugi, Matthew T. Parker, Hendre Ps, Muthemba S, Jaroslav Doležel, Kariba R, Jonathan Featherston, Olufisayo Kolade, P.L. Kumar, Gordon G. Simpson, Ramni Jamnadass, Shengquiang Shu, Robert Asiedu, Chiedozie Egesi, Katarzyna Knop, Jude Obidiegwu, Oniyinde Io, Daniel S. Rokhsar, Geoffrey J. Barton, Nwogha J, David Goodstein, Sherwood Av, Antonio Lopez-Montes, Jessen V. Bredeson, Asrat Asfaw, Nnabue I

مصطلحات موضوعية: Whole genome sequencing, Evolutionary biology, media_common.quotation_subject, Introgression, Sequence assembly, Biology, Quantitative trait locus, Domestication, Inbreeding, Genome, Adaptability, media_common

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::2cd1df117d41ac4d8ae9a0f17b1141f1
https://doi.org/10.1101/2021.04.14.439117

المؤلفون: Pascal G. P. Martin, Xuhong Yu, Gordon G. Simpson, Vasiliki Zacharaki, Daniel F. A. Tomé, Matthew T. Parker, Jim Beynon, Katarzyna Knop, Anna V. Sherwood, Geoffrey J. Barton, Scott D. Michaels

مصطلحات موضوعية: biology, Arabidopsis thaliana, biology.organism_classification, Gene, Cell biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::98754f7ce83828651ce5bff7b80377db
https://doi.org/10.7554/elife.65537.sa2

المؤلفون: Matthew T, Parker, Katarzyna, Knop, Vasiliki, Zacharaki, Anna V, Sherwood, Daniel, Tomé, Xuhong, Yu, Pascal Gp, Martin, Jim, Beynon, Scott D, Michaels, Geoffrey J, Barton, Gordon G, Simpson

المصدر: eLife. 10

مصطلحات موضوعية: Arabidopsis Proteins, Gene Expression Regulation, Plant, Transcription Termination, Genetic, Arabidopsis, RNA-Binding Proteins, NLR Proteins, RNA, Messenger, Genes, Plant

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::1cb3353547003189dd7f9f5b8e03eab9
https://pubmed.ncbi.nlm.nih.gov/33904405

المؤلفون: Gordon G. Simpson, Katarzyna Knop, Matthew T. Parker, Geoffrey J. Barton

المصدر: bioRxiv
BioRxiv

مصطلحات موضوعية: Transcriptome, 0303 health sciences, 03 medical and health sciences, 0302 clinical medicine, Transcription (biology), Computer science, Intron, RNA, splice, Computational biology, Genome, 030217 neurology & neurosurgery, 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5740b0fdf71ab088877f1e0d8904dd4a
https://doi.org/10.1101/2020.05.27.118679

المؤلفون: Wojciech M. Karlowski, Agnieszka Rasinska, Aleksandra Bialkowska, Patrycja Plewka, Katarzyna Knop, Przemyslaw Nuc, Agnieszka Thompson, Artur Jarmolowski, Zofia Szweykowska-Kulinska, Maciej Szymanski

المصدر: RNA Biology. :1-13

مصطلحات موضوعية: 0301 basic medicine, Genetics, RNA, Untranslated, Transcription, Genetic, Arabidopsis Proteins, Arabidopsis, Intron, RNA, RNA polymerase II, Cell Biology, Biology, RNA polymerase III, Long non-coding RNA, 03 medical and health sciences, 030104 developmental biology, RNA, Transfer, RNA, Plant, Transfer RNA, RNA splicing, biology.protein, Nucleic Acid Conformation, RNA Polymerase II, Molecular Biology, Gene

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c54bddb38aca6c336a17711bc35f290e
https://doi.org/10.1080/15476286.2018.1445404

المؤلفون: Katarzyna Knop, Geoffrey J. Barton, Katarzyna Mackinnon, Matthew T. Parker, Nicholas J. Schurch, Anthony Hall, Gordon G. Simpson, Peter D. Gould, Anna V. Sherwood

المصدر: eLife
eLife, Vol 9 (2020)

مصطلحات موضوعية: RNA Caps, 0301 basic medicine, Untranslated region, Adenosine, RNA, Untranslated, Polyadenylation, QH301-705.5, Science, RNA Splicing, Arabidopsis, Computational biology, Biology, Methylation, General Biochemistry, Genetics and Molecular Biology, Nanopores, 03 medical and health sciences, 0302 clinical medicine, epitranscriptome, Gene expression, RNA, Messenger, Biology (General), nanopore, polyadenylation, RNA Processing, Post-Transcriptional, Regulation of gene expression, Messenger RNA, General Immunology and Microbiology, Sequence Analysis, RNA, Gene Expression Profiling, General Neuroscience, RNA, General Medicine, Chromosomes and Gene Expression, 030104 developmental biology, RNA, Plant, A. thaliana, RNA splicing, Medicine, MRNA methylation, Poly A, 030217 neurology & neurosurgery, Research Article, Computational and Systems Biology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72cbb8f5b89cd506621df1728e1aa717
https://ueaeprints.uea.ac.uk/id/eprint/79284/

المؤلفون: Peter D. Gould, Geoffrey J. Barton, Katarzyna Mackinnon, Gordon G. Simpson, Nicholas J. Schurch, Katarzyna Knop, Anna V. Sherwood, Anthony Hall, Matthew T. Parker

مصطلحات موضوعية: Nanopore, Messenger RNA, biology, Chemistry, Arabidopsis, RNA, biology.organism_classification, Cell biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::8ef7d6238eeca00a4789c88b12ab5696
https://doi.org/10.7554/elife.49658.sa2

المؤلفون: Nicholas J. Schurch, Gordon G. Simpson, Geoffrey J. Barton, Peter D. Gould, Anna V. Sherwood, Katarzyna Knop, Katarzyna Mackinnon, Matthew T. Parker, Anthony Hall

مصطلحات موضوعية: Untranslated region, Regulation of gene expression, Messenger RNA, chemistry.chemical_compound, chemistry, Arabidopsis, RNA splicing, RNA, Computational biology, MRNA methylation, Biology, N6-Methyladenosine, biology.organism_classification

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a3fb8a12815369fbfdf6b06a56ec70cf