المؤلفون: Agam, G., Gebhardt, C., Popara, M., Mächtel, R., Folz, J., Ambrose, B., Chamachi, N., Chung, S.Y., Craggs, T.D., de Boer, M., Grohmann, D., Ha, T., Hartmann, A., Hendrix, J., Hirschfeld, V., Hübner, C.G., Hugel, T., Kammerer, D., Kang, H.-S., Kapanidis, A.N., Krainer, G., Kramm, K., Lemke, E.A., Lerner, E., Margeat, E., Martens, K., Michaelis, J., Mitra, J., Moya Muñoz, G.G., Quast, R.B., Robb, N.C., Sattler, M., Schlierf, M., Schneider, J., Schröder, T., Sefer, A., Tan, P.S., Thurn, J., Tinnefeld, P., van Noort, J., Weiss, S., Wendler, N., Zijlstra, N., Barth, A., Seidel, C.A.M., Lamb, D.C., Cordes, T.

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/198312/1/Reliability%20and%20accuracy%20of%20single-molecule%20FRET%20studies%20for%20characterization%20of%20structural%20dynamics%20and%20distances%20in%20protei.pdf; Agam, G. orcid.org/0000-0003-1623-4920 , Gebhardt, C. orcid.org/0000-0002-5834-6579 , Popara, M. orcid.org/0000-0003-2626-6096 et al. (44 more authors) (2023) Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature Methods, 20. pp. 523-535. ISSN 1548-7091

الاتاحة: https://eprints.whiterose.ac.uk/198312/
https://eprints.whiterose.ac.uk/198312/1/Reliability%20and%20accuracy%20of%20single-molecule%20FRET%20studies%20for%20characterization%20of%20structural%20dynamics%20and%20distances%20in%20protei.pdf
https://doi.org/10.1038/s41592-023-01807-0

المؤلفون: Craggs, T.D., Sustarsic, M., Plochowietz, A., Mosayebi, M., Kaju, H., Cuthbert, A., Hohlbein, J., Domicevica, L., Biggin, P.C., Doye, J.P.K., Kapanidis, A.N.

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/170635/1/Substrate%20conformational%20dynamics%20facilitate%20structure-specific%20recognition%20of%20gapped%20DNA%20by%20DNA%20polymerase.pdf; Craggs, T.D. orcid.org/0000-0002-7121-0609 , Sustarsic, M., Plochowietz, A. et al. (8 more authors) (2019) Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase. Nucleic Acids Research, 47 (20). pp. 10788-10800. ISSN 0305-1048

الاتاحة: https://eprints.whiterose.ac.uk/170635/
https://eprints.whiterose.ac.uk/170635/1/Substrate%20conformational%20dynamics%20facilitate%20structure-specific%20recognition%20of%20gapped%20DNA%20by%20DNA%20polymerase.pdf

المؤلفون: Hellenkamp, B., Schmid, S., Doroshenko, O., Opanasyuk, O., Kühnemuth, R., Adariani, S.R., Barth, A., Birkedal, V., Bowen, M.E., Chen, H., Cordes, T., Eilert, T., Fijen, C., Götz, M., Gouridis, G., Gratton, E., Ha, T., Hanke, C.A., Hartmann, A., Hendrix, J., Hildebrandt, L.L., Hohlbein, J., Hübner, C.G., Kallis, E., Kapanidis, A.N., Kim, J.-Y., Krainer, G., Lamb, D.C., Lee, N.K., Lemke, E.A., Levesque, B., Levitus, M., McCann, J.J., Naredi-Rainer, N., Nettels, D., Ngo, T., Qiu, R., Röcker, C., Sanabria, H., Schlierf, M., Schuler, B., Seidel, H., Streit, L., Tinnefeld, P., Tyagi, S., Vandenberk, N., Weninger, K.R., Wünsch, B., Yanez-Orozco, I.S., Michaelis, J., Seidel, C.A.M., Craggs, T.D., Hugel, T.

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/124874/7/s41592-018-0085-0.pdf; Hellenkamp, B., Schmid, S., Doroshenko, O. et al. (50 more authors) (2018) Precision and accuracy of single-molecule FRET measurements - a multi-laboratory benchmark study. Nature Methods, 15. pp. 669-676. ISSN 1548-7091

الاتاحة: https://eprints.whiterose.ac.uk/124874/
https://eprints.whiterose.ac.uk/124874/7/s41592-018-0085-0.pdf

المؤلفون: Meli, M., Sustarsic, M., Craggs, T.D., Kapanidis, A.N., Colombo, G.

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/106747/1/DNA%20Polymerase%20Conformational%20Dynamics%20and%20the%20Role%20of%20Fidelity-Conferring%20Residues%3A%20Insights%20from%20Computational%20Simulations.pdf; Meli, M., Sustarsic, M., Craggs, T.D. et al. (2 more authors) (2016) DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations. Frontiers in Molecular Biosciences, 3.

الاتاحة: https://eprints.whiterose.ac.uk/106747/
https://eprints.whiterose.ac.uk/106747/1/DNA%20Polymerase%20Conformational%20Dynamics%20and%20the%20Role%20of%20Fidelity-Conferring%20Residues%3A%20Insights%20from%20Computational%20Simulations.pdf
https://doi.org/10.3389/fmolb.2016.00020

المؤلفون: Duchi, D., Bauer, D.L.V., Fernandez, L., Evans, G., Robb, N., Hwang, L.C., Gryte, K., Tomescu, A., Zawadzki, P., Morichaud, Z., Brodolin, K., Kapanidis, A.N.

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/110665/1/1-s2.0-S1097276516304257-main.pdf; Duchi, D., Bauer, D.L.V., Fernandez, L. et al. (9 more authors) (2016) RNA Polymerase Pausing during Initial Transcription. Molecular Cell, 63 (6). pp. 939-950. ISSN 1097-2765

الاتاحة: https://eprints.whiterose.ac.uk/110665/
https://eprints.whiterose.ac.uk/110665/1/1-s2.0-S1097276516304257-main.pdf
https://doi.org/10.1016/j.molcel.2016.08.011

المؤلفون: Hohlbein, J., Aigrain, L., Craggs, T.D., Bermek, O., Potapova, O., Shoolizadeh, P., Grindley, N.D.F., Joyce, C.M., Kapanidis, A.N.

وصف الملف: text

Relation: https://eprints.whiterose.ac.uk/125120/1/Conformational%20landscapes%20of%20DNA%20polymerase%20I%20and%20mutator%20derivatives%20establish%20fidelity%20checkpoints%20for%20nucleotide%20insertion.pdf; Hohlbein, J., Aigrain, L., Craggs, T.D. et al. (6 more authors) (2013) Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion. Nature Communications, 4. 2131. ISSN 2041-1723

الاتاحة: https://eprints.whiterose.ac.uk/125120/
https://eprints.whiterose.ac.uk/125120/1/Conformational%20landscapes%20of%20DNA%20polymerase%20I%20and%20mutator%20derivatives%20establish%20fidelity%20checkpoints%20for%20nucleotide%20insertion.pdf
https://doi.org/10.1038/ncomms3131

المؤلفون: Robb N.C., Taylor J.M., Kent A., Pambos O.J., Gilboa B., Evangelidou M., Mentis A.-F.A., Kapanidis A.N.

المصدر: Scientific Reports ; https://www.scopus.com/inward/record.uri?eid=2-s2.0-85074727804&doi=10.1038%2fs41598-019-52759-5&partnerID=40&md5=43e7bcc22ba113add87128820b81ac6b

مصطلحات موضوعية: calcium chloride, DNA, isolation and purification, metabolism, staining, time factor, virus, Staining and Labeling, Time Factors, Viruses, Nature Publishing Group

Relation: http://hdl.handle.net/11615/78525

الاتاحة: http://hdl.handle.net/11615/78525
https://doi.org/10.1038/s41598-019-52759-5

المؤلفون: Hohlbein, J., Kapanidis, A.N.

المصدر: Methods in Enzymology ; ISBN: 9780128092675

مصطلحات موضوعية: Confocal microscopy, DNA polymerase, Single-molecule Förster resonance energy transfer

وصف الملف: application/pdf

Relation: https://edepot.wur.nl/397926

الاتاحة: https://research.wur.nl/en/publications/probing-the-conformational-landscape-of-dna-polymerases-using-dif
https://doi.org/10.1016/bs.mie.2016.08.023

المؤلفون: Harding, P.J., Attrill, H., Ross, S., Koeppe, J.R., Kapanidis, A.N., Watts, A.

المصدر: Biochemical Society Transactions ; volume 35, issue 4, page 760-763 ; ISSN 0300-5127 1470-8752

الاتاحة: http://dx.doi.org/10.1042/bst0350760
https://portlandpress.com/biochemsoctrans/article-pdf/35/4/760/541854/bst0350760.pdf

المؤلفون: Hohlbein, J.C., Aigrain, L., Craggs, T.D., Bermek, O., Potapova, O., Shoolizadeh, P., Grindley, N.D.F., Joyce, C.M., Kapanidis, A.N.

المصدر: ISSN: 2041-1723

مصطلحات الفهرس: active-site, alternating-laser excitation, dynamics, escherichia-coli, klenow fragment, mechanism, photon distribution, probability-distribution analysis, resonance energy-transfer, single-molecule fret, Article/Letter to editor

URL: https://edepot.wur.nl/265184
https://edepot.wur.nl/265184

المؤلفون: McGinn, S., Bauer, D., Brefort, T., Dong, L., El-Sagheer, A., Elsharawy, A., Evans, G., Falk-Sörqvist, E., Forster, M., Fredriksson, S., Freeman, P., Freitag, C., Fritzsche, J., Gibson, S., Gullberg, M., Gut, M., Heath, S., Heath-Brun, I., Heron, A.J., Hohlbein, J., Ke, R., Lancaster, O., Le Reste, L., Maglia, G., Marie, R., Mauger, F., Mertes, F., Mignardi, M., Moens, L., Oostmeijer, J., Out, R., Pedersen, J.N., Persson, F., Picaud, V., Rotem, D., Schracke, N., Sengenes, J., Stähler, P.F., Stade, B., Stoddart, D., Teng, X., Veal, C.D., Zahra, N., Bayley, H., Beier, M., Brown, T., Dekker, C., Ekström, B., Flyvbjerg, H., Franke, A., Guenther, S., Kapanidis, A.N., Kaye, J., Kristensen, A., Lehrach, H., Mangion, J., Sauer, S., Schyns, E., Tost, J., van Helvoort, J.M.L.M., van der Zaag, P.J., Tegenfeldt, J.O., Brookes, A.J., Mir, K., Nilsson, M., Willcocks, J.P., Gut, I.G.

مصطلحات موضوعية: Technology Platforms

Relation: New technologies for DNA analysis - a review of the READNA project. McGinn, S. and Bauer, D. and Brefort, T. and Dong, L. and El-Sagheer, A. and Elsharawy, A. and Evans, G. and Falk-Sörqvist, E. and Forster, M. and Fredriksson, S. and Freeman, P. and Freitag, C. and Fritzsche, J. and Gibson, S. and Gullberg, M. and Gut, M. and Heath, S. and Heath-Brun, I. and Heron, A.J. and Hohlbein, J. and Ke, R. and Lancaster, O. and Le Reste, L. and Maglia, G. and Marie, R. and Mauger, F. and Mertes, F. and Mignardi, M. and Moens, L. and Oostmeijer, J. and Out, R. and Pedersen, J.N. and Persson, F. and Picaud, V. and Rotem, D. and Schracke, N. and Sengenes, J. and Stähler, P.F. and Stade, B. and Stoddart, D. and Teng, X. and Veal, C.D. and Zahra, N. and Bayley, H. and Beier, M. and Brown, T. and Dekker, C. and Ekström, B. and Flyvbjerg, H. and Franke, A. and Guenther, S. and Kapanidis, A.N. and Kaye, J. and Kristensen, A. and Lehrach, H. and Mangion, J. and Sauer, S. and Schyns, E. and Tost, J. and van Helvoort, J.M.L.M. and van der Zaag, P.J. and Tegenfeldt, J.O. and Brookes, A.J. and Mir, K. and Nilsson, M. and Willcocks, J.P. and Gut, I.G. New Biotechnology 33 (3): 311-330. 25 May 2016

الاتاحة: http://edoc.mdc-berlin.de/17619/
https://edoc.mdc-berlin.de/17619/
https://doi.org/10.1016/j.nbt.2015.10.003

المؤلفون: Duchi, D., Bauer, D.L.V., Fernandez, L., Evans, G., Robb, N., Hwang, L.C., Gryte, K., Tomescu, A., Zawadzki, P., Morichaud, Z., Brodolin, K., Kapanidis, A.N.

المصدر: Molecular Cell

مصطلحات موضوعية: Time Factors, Base Sequence, Transcription, Genetic, Escherichia coli Proteins, promoter escape, DNA-Directed RNA Polymerases, Cell Biology, single-molecule FRET, Single Molecule Imaging, Article, RNA, Bacterial, DNA scrunching, Lac Operon, RNA polymerase, initial transcription, Escherichia coli, Fluorescence Resonance Energy Transfer, transcriptional pausing, RNA, Messenger, Rifampin, Promoter Regions, Genetic, Molecular Biology, Nucleic Acid Synthesis Inhibitors

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::73f2fcd10922d85ca652586653900bea
http://ora.ox.ac.uk/objects/uuid: