المؤلفون: Julian Matschinske, Julian Späth, Mohammad Bakhtiari, Niklas Probul, Mohammad Mahdi Kazemi Majdabadi, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Anne Hartebrodt, Balazs-Attila Orban, Sándor-József Fejér, Olga Zolotareva, Supratim Das, Linda Baumbach, Josch K Pauling, Olivera Tomašević, Béla Bihari, Marcus Bloice, Nina C Donner, Walid Fdhila, Tobias Frisch, Anne-Christin Hauschild, Dominik Heider, Andreas Holzinger, Walter Hötzendorfer, Jan Hospes, Tim Kacprowski, Markus Kastelitz, Markus List, Rudolf Mayer, Mónika Moga, Heimo Müller, Anastasia Pustozerova, Richard Röttger, Christina C Saak, Anna Saranti, Harald H H W Schmidt, Christof Tschohl, Nina K Wenke, Jan Baumbach

المصدر: Journal of Medical Internet Research, Vol 25, p e42621 (2023)

مصطلحات موضوعية: Computer applications to medicine. Medical informatics, R858-859.7, Public aspects of medicine, RA1-1270

وصف الملف: electronic resource

Relation: https://www.jmir.org/2023/1/e42621; https://doaj.org/toc/1438-8871

URL الوصول: https://doaj.org/article/291c28483a50402ea7629f652a71d7c5

المؤلفون: Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Julian Matschinske, Tobias Frisch, Markus List, Julian Späth, Stefan Weiss, Uwe Völker, Esa Pitkänen, Dominik Heider, Nina Kerstin Wenke, Georgios Kaissis, Daniel Rueckert, Tim Kacprowski, Jan Baumbach

المصدر: Genome Biology, Vol 23, Iss 1, Pp 1-24 (2022)

مصطلحات موضوعية: sPLINK, PLINK, Federated learning, Genome-wide association studies, GWAS, Meta-analysis, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/3d896a9b432e4884b5b3e0f48567d7c7

المؤلفون: Olga Zolotareva, Reza Nasirigerdeh, Julian Matschinske, Reihaneh Torkzadehmahani, Mohammad Bakhtiari, Tobias Frisch, Julian Späth, David B. Blumenthal, Amir Abbasinejad, Paolo Tieri, Georgios Kaissis, Daniel Rückert, Nina K. Wenke, Markus List, Jan Baumbach

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-26 (2021)

مصطلحات موضوعية: Differential expression analysis, Federated learning, Privacy of biomedical data, Meta-analysis, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/5c366bccf02e4ca6913437d78c473f04

المؤلفون: Julian Späth, Julian Matschinske, Frederick K. Kamanu, Sabina A. Murphy, Olga Zolotareva, Mohammad Bakhtiari, Elliott M. Antman, Joseph Loscalzo, Alissa Brauneck, Louisa Schmalhorst, Gabriele Buchholtz, Jan Baumbach

المصدر: PLOS Digital Health, Vol 1, Iss 9 (2022)

مصطلحات موضوعية: Computer applications to medicine. Medical informatics, R858-859.7

وصف الملف: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931301/?tool=EBI; https://doaj.org/toc/2767-3170

URL الوصول: https://doaj.org/article/3848810023e345f496a17ece06cc1fce

المؤلفون: Sepideh Sadegh, Julian Matschinske, David B. Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K. Wenke, Kevin Yuan, Josch K. Pauling, Jan Baumbach

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/97cfd30dcc8f444386de8cedd10dff72

المؤلفون: Reza Nasirigerdeh (11996205), Reihaneh Torkzadehmahani (11838261), Julian Matschinske (11838258), Tobias Frisch (6637163), Markus List (3621461), Julian Späth (11838267), Stefan Weiss (1474864), Uwe Völker (112748), Esa Pitkänen (277010), Dominik Heider (31818), Nina Kerstin Wenke (11996208), Georgios Kaissis (6057578), Daniel Rueckert (171282), Tim Kacprowski (793348), Jan Baumbach (14867)

مصطلحات موضوعية: Statistics, sPLINK, PLINK, Federated learning, Genome-wide association studies, GWAS, Meta-analysis, Privacy

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_sPLINK_a_hybrid_federated_tool_as_a_robust_alternative_to_meta-analysis_in_genome-wide_association_studies/19029192

الاتاحة: https://doi.org/10.6084/m9.figshare.19029192.v1

المؤلفون: Reza Nasirigerdeh (11996205), Reihaneh Torkzadehmahani (11838261), Julian Matschinske (11838258), Tobias Frisch (6637163), Markus List (3621461), Julian Späth (11838267), Stefan Weiss (1474864), Uwe Völker (112748), Esa Pitkänen (277010), Dominik Heider (31818), Nina Kerstin Wenke (11996208), Georgios Kaissis (6057578), Daniel Rueckert (171282), Tim Kacprowski (793348), Jan Baumbach (14867)

مصطلحات موضوعية: Statistics, sPLINK, PLINK, Federated learning, Genome-wide association studies, GWAS, Meta-analysis, Privacy

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_sPLINK_a_hybrid_federated_tool_as_a_robust_alternative_to_meta-analysis_in_genome-wide_association_studies/19029189

الاتاحة: https://doi.org/10.6084/m9.figshare.19029189.v1

المؤلفون: Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G. Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K. Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina K. Wenke, Massimiliano Zanin, Olga Zolotareva, Jan Baumbach, David B. Blumenthal

مصطلحات موضوعية: Machine learning, Software, Standards

Relation: https://zenodo.org/communities/transys; oai:zenodo.org:5644918

الاتاحة: https://doi.org/10.1038/s41592-021-01241-0

المؤلفون: Olga Zolotareva (11838252), Reza Nasirigerdeh (11838255), Julian Matschinske (11838258), Reihaneh Torkzadehmahani (11838261), Mohammad Bakhtiari (11838264), Tobias Frisch (6637163), Julian Späth (11838267), David B. Blumenthal (11838270), Amir Abbasinejad (11838273), Paolo Tieri (179558), Georgios Kaissis (6057578), Daniel Rückert (11838276), Nina K. Wenke (11838279), Markus List (3621461), Jan Baumbach (14867)

مصطلحات موضوعية: Genetics, Molecular Biology, Biotechnology, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Differential expression analysis, Federated learning, Privacy of biomedical data, Meta-analysis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_4_of_Flimma_a_federated_and_privacy-aware_tool_for_differential_gene_expression_analysis/17204970

الاتاحة: https://doi.org/10.6084/m9.figshare.17204970.v1

المؤلفون: Olga Zolotareva (11838252), Reza Nasirigerdeh (11838255), Julian Matschinske (11838258), Reihaneh Torkzadehmahani (11838261), Mohammad Bakhtiari (11838264), Tobias Frisch (6637163), Julian Späth (11838267), David B. Blumenthal (11838270), Amir Abbasinejad (11838273), Paolo Tieri (179558), Georgios Kaissis (6057578), Daniel Rückert (11838276), Nina K. Wenke (11838279), Markus List (3621461), Jan Baumbach (14867)

مصطلحات موضوعية: Genetics, Molecular Biology, Biotechnology, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Differential expression analysis, Federated learning, Privacy of biomedical data, Meta-analysis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_9_of_Flimma_a_federated_and_privacy-aware_tool_for_differential_gene_expression_analysis/17204985

الاتاحة: https://doi.org/10.6084/m9.figshare.17204985.v1

المؤلفون: Andreas Maier, Michael Hartung, Julian Matschinske, Zakaria Louadi

Relation: https://github.com/drugst-one/plugin/tree/v1.2.2; https://doi.org/10.5281/zenodo.11073054; https://doi.org/10.5281/zenodo.11073055; oai:zenodo.org:11073055

الاتاحة: https://doi.org/10.5281/zenodo.11073055

المؤلفون: Han, Cao, Youcheng, Zhang, Jan, Baumbach, Paul R, Burton, Dominic, Dwyer, Nikolaos, Koutsouleris, Julian, Matschinske, Yannick, Marcon, Sivanesan, Rajan, Thilo, Rieg, Patricia, Ryser-Welch, Julian, Späth, Carl, Herrmann, Emanuel, Schwarz

المصدر: Bioinformatics. 38:4919-4926

مصطلحات موضوعية: Machine Learning, Statistics and Probability, Computational Mathematics, Computational Theory and Mathematics, Privacy, Humans, Programming Languages, Molecular Biology, Biochemistry, Software, Algorithms, Computer Science Applications

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1705b181abbd23dc2a454cb46fc778f3
https://doi.org/10.1093/bioinformatics/btac616

المؤلفون: Justus Wolff, Julian Matschinske, Dietrich Baumgart, Anne Pytlik, Andreas Keck, Arunakiry Natarajan, Claudio E. von Schacky, Josch K. Pauling, Jan Baumbach

المصدر: Journal of Integrative Bioinformatics. 19

مصطلحات موضوعية: Machine Learning, Artificial Intelligence, Humans, General Medicine, Proof of Concept Study, Coronary Vessels, Delivery of Health Care

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::48424d749c1baf720d169ff80892f45f
https://doi.org/10.1515/jib-2022-0032

المؤلفون: Sepideh Sadegh, Julian Matschinske, David B. Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K. Wenke, Kevin Yuan, Josch K. Pauling, Jan Baumbach

المصدر: Targeting infectious diseases: The CoVex example.

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::2debf9affe6f25e6f65077f5976179c9
https://doi.org/10.14293/s2199-rexpo22008.v1

المؤلفون: Michael Hartung, Andreas Maier, Sepideh Sadegh, Julian Matschinske, Markus List, Olga Zolotareva, Jan Baumbach

المصدر: A plug-and-play solution to bring network exploration and drug repurposing to biomedical web platforms.

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::1f3805336bd7afff24ecdf604e64c404
https://doi.org/10.14293/s2199-1006.1.sor-.pppvbd8w.v1

المؤلفون: Julian Späth, Marisol Salgado-Albarrán, Tim Daniel Rose, Josch Konstantin Pauling, Gihanna Galindez, Sepideh Sadegh, Jan Baumbach, Julian Matschinske

المصدر: Nature Computational Science
Galindez, G, Matschinske, J, Rose, T D, Sadegh, S, Salgado-Albarrán, M, Späth, J, Baumbach, J & Pauling, J K 2021, ' Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies ', Nature Computational Science, vol. 1, no. 1, pp. 33-41 . https://doi.org/10.1038/s43588-020-00007-6

مصطلحات موضوعية: 0303 health sciences, Computer Networks and Communications, Drug discovery, Computer science, Process (engineering), Context (language use), 3. Good health, Computer Science Applications, 03 medical and health sciences, Drug repositioning, Identification (information), 0302 clinical medicine, Risk analysis (engineering), 030220 oncology & carcinogenesis, Preparedness, Pandemic, Computer Science (miscellaneous), Set (psychology), 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b5b4631fe023e2ee8d352230fe304fd
https://doi.org/10.1038/s43588-020-00007-6

المؤلفون: Julian Matschinske, Patricia Ryser-Welch, Yannick Marcon, Sivanesan Rajan, Nikolaos Koutsouleris, Dominic B. Dwyer, Carl Herrmann, Paul Burton, Youcheng Zhang, Thilo Rieg, Julian Späth, Han Cao, Jan Baumbach, Emanuel Schwarz

مصطلحات موضوعية: Computer science, business.industry, R Programming Language, Multi-task learning, Machine learning, computer.software_genre, Data sharing, Privacy preserving, Task (computing), Identification (information), Data Protection Act 1998, Limit (mathematics), Artificial intelligence, business, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::1f7a15e9d552220787d4f6c1420836d2
https://doi.org/10.1101/2021.08.26.457778

المؤلفون: Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Julian Matschinske, Tobias Frisch, Markus List, Julian Späth, Stefan Weiß, Uwe Völker, Dominik Heider, Nina Kerstin Wenke, Tim Kacprowski, Jan Baumbach

المصدر: bioRxiv

مصطلحات موضوعية: 0303 health sciences, 020205 medical informatics, Computer science, Genome-wide association study, 02 engineering and technology, Gold standard (test), computer.software_genre, Summary statistics, Set (abstract data type), 03 medical and health sciences, Sample size determination, Meta-analysis, 0202 electrical engineering, electronic engineering, information engineering, Data mining, Raw data, computer, 030304 developmental biology, Genetic association

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::81f02b6e6aa69e7af6ae2a996cbc635e
https://doi.org/10.1101/2020.06.05.136382

المؤلفون: Denise Kühnert, Vincent Navratil, Roman Martin, Marius Welzel, Franziska Hufsky, Guillermo Rangel-Pineros, Marie Hoffmann, Julian Matschinske, Robert D. Finn, Manja Marz, Hannah F. Löchel, Georges Hattab, Jan Baumbach, Stefan Hoops, Alice C. McHardy, Pedro Mendes, Kevin Lamkiewicz, Niko Beerenwinkel, Ioanna Kalvari, Joshua B Singer, Maria Jesus Martin, David Robertson, Jaina Mistry, Alexandre Almeida, Chris Upton, Markus List, Sara Chuguransky, Cecilia N. Arighi, Oliver Drechsel, Nicole Redaschi, Dominik Heider, Alex Bateman, Lorna Richardson, Christian Brandt, Pieter Libin, Adrian Fritz, Anton I. Petrov, Lars Kaderali, Knut Reinert, Lowri Williams, Max von Kleist, Áine O'Toole, Abdel Aouacheria, Martin Hölzer, Nancy Ontiveros-Palacios, Susanne Reimering, Kristof Theys, Stephan Fuchs, Anne-Christin Hauschild, Sepideh Sadegh, Gorka Lasso, Marco Cacciabue, Eric P. Nawrocki, Alejandro Reyes, Renó Kmiecinski

المساهمون: Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), BRICS, Braunschweiger Zentrum für Systembiologie, Rebenring 56,38106 Braunschweig, Germany., Informatics and Applied Informatics, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE)

المصدر: Briefings in Bioinformatics
Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa232⟩
Preprints
Briefings in bioinformatics
England
Hufsky, F, Lamkiewicz, K, Almeida, A, Aouacheria, A, Arighi, C, Bateman, A, Baumbach, J, Beerenwinkel, N, Brandt, C, Cacciabue, M, Chuguransky, S, Drechsel, O, Finn, R D, Fritz, A, Fuchs, S, Hattab, G, Hauschild, A-C, Heider, D, Hoffmann, M, Hölzer, M, Hoops, S, Kaderali, L, Kalvari, I, von Kleist, M, Kmiecinski, R, Kühnert, D, Lasso, G, Libin, P, List, M, Löchel, H F, Martin, M J, Martin, R, Matschinske, J, McHardy, A C, Mendes, P, Mistry, J, Navratil, V, Nawrocki, E P, O'Toole, A N, Ontiveros-Palacios, N, Petrov, A I, Rangel-Pineros, G, Redaschi, N, Reimering, S, Reinert, K, Reyes, A, Richardson, L, Robertson, D L, Sadegh, S, Singer, J B, Theys, K, Upton, C, Welzel, M, Williams, L & Marz, M 2021, ' Computational strategies to combat COVID-19 : useful tools to accelerate SARS-CoV-2 and coronavirus research ', Briefings in Bioinformatics, vol. 22, no. 2, pp. 642-663 . https://doi.org/10.1093/bib/bbaa232
Briefings in Bioinformatics, 22 (2)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Preprints.org
Briefings in Bioinformatics, 2020, ⟨10.1093/bib/bbaa232⟩

مصطلحات موضوعية: Biomedical Research, AcademicSubjects/SCI01060, Bioinformatics workflows, Computer science, viruses, [SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC], medicine.disease_cause, ANNOTATION, purl.org/becyt/ford/1 [https], 0302 clinical medicine, FUNCTIONAL RECEPTOR, Pandemic, PHYLOGENETIC ANALYSIS, [INFO.INFO-BT]Computer Science [cs]/Biotechnology, ComputingMilieux_MISCELLANEOUS, COVID-19/epidemiology, Coronavirus, 0303 health sciences, virus bioinformatics, virus diseases, purl.org/becyt/ford/1.2 [https], sequencing, 3. Good health, ddc, virology, GENOME, epidemiology, Life Sciences & Biomedicine, Information Systems, Biochemistry & Molecular Biology, Coronavirus disease 2019 (COVID-19), DATABASE, drug design, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Sequencing data, Sars-Cov-2, tools, [SDV.CAN]Life Sciences [q-bio]/Cancer, Computational biology, Genome, Viral, Biochemical Research Methods, [SDV.BDLR.RS]Life Sciences [q-bio]/Reproductive Biology/Sexual reproduction, 03 medical and health sciences, SARS-CoV-2/genetics, RESOURCE, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], medicine, Humans, ddc:610, [SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM], purl.org/becyt/ford/1.6 [https], Molecular Biology, Pandemics, 030304 developmental biology, Method Review, Science & Technology, SARS-CoV-2, COVID-19, Computational Biology, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, [SDV.IMM.IMM]Life Sciences [q-bio]/Immunology/Immunotherapy, Virology, PROTEIN INTERACTIONS, Infectious disease (medical specialty), Novel virus, REPLICATION, RNA, VISUALIZATION, Mathematical & Computational Biology, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], 610 Medizin und Gesundheit, 030217 neurology & neurosurgery

وصف الملف: application/pdf; application/application/pdf; Print

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7cc1ebc9849708c6b19e128f12d7c8fc

المؤلفون: Olga Zolotareva (11838252), Reza Nasirigerdeh (11838255), Julian Matschinske (11838258), Reihaneh Torkzadehmahani (11838261), Mohammad Bakhtiari (11838264), Tobias Frisch (6637163), Julian Späth (11838267), David B. Blumenthal (11838270), Amir Abbasinejad (11838273), Paolo Tieri (179558), Georgios Kaissis (6057578), Daniel Rückert (11838276), Nina K. Wenke (11838279), Markus List (3621461), Jan Baumbach (14867)

مصطلحات موضوعية: Genetics, Molecular Biology, Biotechnology, Infectious Diseases, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Differential expression analysis, Federated learning, Privacy of biomedical data, Meta-analysis

Relation: https://figshare.com/articles/dataset/Additional_file_5_of_Flimma_a_federated_and_privacy-aware_tool_for_differential_gene_expression_analysis/17204973

الاتاحة: https://doi.org/10.6084/m9.figshare.17204973.v1