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1Academic Journal
المؤلفون: Alfred Fillol-Salom, Ahlam Alsaadi, Jorge A Moura de Sousa, Li Zhong, Kevin R Foster, Eduardo P C Rocha, José R Penadés, Hanne Ingmer, Jakob Haaber
المصدر: PLoS Pathogens, Vol 15, Iss 7, p e1007888 (2019)
مصطلحات موضوعية: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5
وصف الملف: electronic resource
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2Academic Journal
المصدر: PLoS Genetics, Vol 14, Iss 12, p e1007862 (2018)
وصف الملف: electronic resource
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3Academic Journal
المؤلفون: Migla Miskinyte, Ana Sousa, Ricardo S Ramiro, Jorge A Moura de Sousa, Jerzy Kotlinowski, Iris Caramalho, Sara Magalhães, Miguel P Soares, Isabel Gordo
المصدر: PLoS Pathogens, Vol 9, Iss 12, p e1003802 (2013)
مصطلحات موضوعية: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5
وصف الملف: electronic resource
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4Academic Journal
المؤلفون: Rubén Barcia-Cruz, David Goudenège, Jorge A. Moura de Sousa, Damien Piel, Martial Marbouty, Eduardo P. C. Rocha, Frédérique Le Roux
المصدر: Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
مصطلحات موضوعية: Science
وصف الملف: electronic resource
Relation: https://doaj.org/toc/2041-1723
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5Academic Journal
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6Academic Journal
المؤلفون: Marie Touchon, Amandine Perrin, Jorge André Moura de Sousa, Belinda Vangchhia, Samantha Burn, Claire L O'Brien, Erick Denamur, David Gordon, Eduardo Pc Rocha
المصدر: PLoS Genetics, Vol 16, Iss 6, p e1008866 (2020)
Relation: https://doi.org/10.1371/journal.pgen.1008866; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404; https://doaj.org/article/f03f2d0f039840ebbf546e849ba07704
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المساهمون: Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Imperial College London, We acknowledge funding from Equipe FRM (Fondation pour la Recherche Médicale): EQU201903007835, Laboratoire d’Excellence IBEID Integrative Biology of Emerging Infectious Diseases [ANR LBX-62 IBEID AAP BOURSE S2I ROCHA]. This work used the computational and storage services (TARS cluster) provided by the IT department at Institut Pasteur, Paris., We thank Kim Seed for comments and suggestions on earlier versions of the manuscript, Graham Hatfull for helpful discussion regarding the PhiRv1 and PhiRv2 elements in M. tuberculosis, and Bertrand Néron and Fabien Mareuil from the Institut Pasteur’s Bioinformatics and Biostatistics Hub for help in the development of the Docker and Galaxy version of SatelliteFinder., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010)
المصدر: Nucleic Acids Research
Nucleic Acids Research, In press, ⟨10.1093/nar/gkad123⟩مصطلحات موضوعية: Horizontal Gene Transfer, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], Mobile Genetic Elements, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Genetics, Comparative Genomics, Phage Satellites, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
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المساهمون: Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), We acknowledge support by the PRESTIGE Program (PRESTIGE-2017-1-0012), the ANR grants (ANR-16-CE16-0029), the Fondation pour la Recherche Médicale (Equipe FRM EQU201903007835), and the Laboratoire d’Excellence IBEID (ANR-10-LABX-62-IBEID)., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), ANR-16-CE12-0029,Salmo_prophages,Co-évolution des génomes bactériens et de leurs prophages: cooptation des prophages et conversion lysogenique chez Salmonella(2016), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
المصدر: Molecular Biology and Evolution
Molecular Biology and Evolution, Oxford University Press (OUP), 2021, 38 (6), pp.2497-2512. ⟨10.1093/molbev/msab044⟩
Molecular Biology and Evolution, 2021, 38 (6), pp.2497-2512. ⟨10.1093/molbev/msab044⟩مصطلحات موضوعية: bacteriophages, viruses, Lysin, Virulence, genomic diversification, AcademicSubjects/SCI01180, Genome, Gene flow, Bacteriophage, microbial evolution, 03 medical and health sciences, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Recombinase, Gene, Discoveries, 030304 developmental biology, 2. Zero hunger, Genetics, 0303 health sciences, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], biology, 030306 microbiology, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], AcademicSubjects/SCI01130, biology.organism_classification, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Virion assembly, horizontal gene transfer, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
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9Academic Journal
المصدر: PeerJ, Vol 4, p e2256 (2016)
مصطلحات موضوعية: Fisher Geometric Model, Clonal interference, Genetic hitchiking, Natural selection, Medicine, Biology (General), QH301-705.5
وصف الملف: electronic resource
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المؤلفون: Jorge A. Moura de Sousa, Eduardo P. C. Rocha
المساهمون: Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), We acknowledge the financial support of Equipe FRM (grant no. EQU201903007835), Laboratoire d'Excellence IBEID (grant no. ANR-10-LABX-62-IBEID) and the ANR (SALMOPROPHAGE ANR-16-CE16-0029)., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), ANR-16-CE12-0029,Salmo_prophages,Co-évolution des génomes bactériens et de leurs prophages: cooptation des prophages et conversion lysogenique chez Salmonella(2016)
المصدر: Philosophical Transactions of the Royal Society B: Biological Sciences
Philosophical Transactions of the Royal Society B: Biological Sciences, 2022, 377 (1842), pp.20200475. ⟨10.1098/rstb.2020.0475⟩مصطلحات موضوعية: MESH: Host Specificity, [SDV]Life Sciences [q-bio], viruses, Genome, Viral, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Genome, Host Specificity, Bacteriophage, Evolution, Molecular, Plasmid, Molecular evolution, Bacteriophages, MESH: Bacteriophages, MESH: Genetic Variation, MESH: Phylogeny, Gene, MESH: Evolution, Molecular, Research Articles, Phylogeny, Genetic diversity, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], biology, evolutionary genomics, Genetic Variation, mobile genetic elements, Articles, phage satellites, Integrases, biology.organism_classification, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Evolutionary biology, horizontal gene transfer, Mobile genetic elements, MESH: Genome, Viral, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
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المؤلفون: Amandine Buffet, Jorge A. Moura de Sousa, Matthieu Haudiquet, Eduardo P. C. Rocha, Olaya Rendueles
المساهمون: Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Ecole Doctorale Frontiere de l’Innovation en Recherche et Education (ED 474 FIRE), Université de Paris (UP)-Université Paris sciences et lettres (PSL), MH is funded by an ANR JCJC (Agence national de recherche) grant [ANR 18 CE12 0001 01 ENCAPSULATION] awarded to OR. JAMS is supported by an ANR grant [ANR 16 CE12 0029 02 SALMOPROPHAGE] awarded to EPCR. The laboratory is funded by a Laboratoire d’Excellence ‘Integrative Biology of Emerging Infectious Diseases’ (grant ANR-10-LABX-62-IBEID)., We thank Pedro Oliveira for making available the profiles for the RMS systems, Marie Touchon for help in the analysis of CRISPR, and Amandine Perrin for help with building pan-genomes., ANR-18-CE12-0001,ENCAPSULATION,Le rôle évolutif des capsules dans l'adaptation bactérienne(2018), ANR-16-CE12-0029,Salmo_prophages,Co-évolution des génomes bactériens et de leurs prophages: cooptation des prophages et conversion lysogenique chez Salmonella(2016), ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Université Paris Cité (UPCité)-Université Paris sciences et lettres (PSL)
المصدر: ISME Journal
ISME Journal, Nature Publishing Group, 2020, 14 (12), pp.2980-2996. ⟨10.1038/s41396-020-0726-z⟩
The ISME Journal
ISME Journal, 2020, 14 (12), pp.2980-2996. ⟨10.1038/s41396-020-0726-z⟩مصطلحات موضوعية: Serotype, Species complex, Klebsiella, Klebsiella pneumoniae, Prophages, Population, Biology, Serogroup, Microbiology, Article, Microbial ecology, 03 medical and health sciences, Animals, Bacteriophages, education, Gene, Ecology, Evolution, Behavior and Systematics, Prophage, 030304 developmental biology, 2. Zero hunger, Infectivity, 0303 health sciences, education.field_of_study, Environmental microbiology, Bacteria, 030306 microbiology, biology.organism_classification, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Lytic cycle, Predatory Behavior, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
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المؤلفون: Jorge A. Moura de Sousa, Eduardo P. C. Rocha
المساهمون: Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), This work was funded by European Research Council grant [EVOMOBILOME n°281605] to E.P.C.R. and by an EU FP7 PRESTIGE grant [PRESTIGE-2017-1-0012] from Campus France to J.A.M.S., We thank Marie Touchon, José Pénadés, Hanne Ingmar, Jakob Haaber and Carmen Bessa-Gomes for comments, suggestions, and criticisms during the development and testing of the model and in earlier versions of this manuscript, European Project: 281605,EC:FP7:ERC,ERC-2011-StG_20101109,EVOMOBILOME(2012), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
المصدر: Scientific Reports, Vol 9, Iss 1, Pp 1-13 (2019)
Scientific Reports
Scientific Reports, 2019, 9 (1), pp.3149. ⟨10.1038/s41598-019-39773-3⟩
Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.3149. ⟨10.1038/s41598-019-39773-3⟩مصطلحات موضوعية: 0301 basic medicine, Phage therapy, medicine.medical_treatment, media_common.quotation_subject, viruses, Population, Virulence, lcsh:Medicine, Biology, Competition (biology), Article, Bacterial genetics, 03 medical and health sciences, 0302 clinical medicine, Lysogen, Lysogenic cycle, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Drug Resistance, Bacterial, medicine, Escherichia coli, Humans, Bacteriophages, Phage Therapy, education, lcsh:Science, Lysogeny, media_common, Genetics, education.field_of_study, Multidisciplinary, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Bacteria, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], Microbiota, lcsh:R, Genetic Variation, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Anti-Bacterial Agents, Colonisation, 030104 developmental biology, Cellular Microenvironment, Host-Pathogen Interactions, lcsh:Q, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], 030217 neurology & neurosurgery
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