المؤلفون: Annika Jochheim, Florian A. Jochheim, Alexandra Kolodyazhnaya, Étienne Morice, Martin Steinegger, Johannes Söding

المصدر: Microbiome, Vol 12, Iss 1, Pp 1-19 (2024)

مصطلحات موضوعية: Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2049-2618

URL الوصول: https://doaj.org/article/ff87eb465f0a445599013d3df6a4b7e0

المؤلفون: Saikat Banerjee, Franco L. Simonetti, Kira E. Detrois, Anubhav Kaphle, Raktim Mitra, Rahul Nagial, Johannes Söding

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-16 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/e01619b9538040d6a7f538976c3ee916

المؤلفون: Eli Levy Karin, Milot Mirdita, Johannes Söding

المصدر: Microbiome, Vol 8, Iss 1, Pp 1-15 (2020)

مصطلحات موضوعية: MetaEuk, Eukaryotes, Homology detection, Prediction, Annotation, Contigs, Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-020-00808-x; https://doaj.org/toc/2049-2618

URL الوصول: https://doaj.org/article/36812ff526fc4f96b38c76bd60b22ef7

المؤلفون: Zhan Qi, Christophe Jung, Peter Bandilla, Claudia Ludwig, Mark Heron, Anja Sophie Kiesel, Mariam Museridze, Julia Philippou‐Massier, Miroslav Nikolov, Alessio Renna Max Schnepf, Ulrich Unnerstall, Stefano Ceolin, Bettina Mühlig, Nicolas Gompel, Johannes Soeding, Ulrike Gaul

المصدر: Molecular Systems Biology, Vol 18, Iss 2, Pp n/a-n/a (2022)

مصطلحات موضوعية: gene expression, modeling, motif search, mutational analysis, promoter, Biology (General), QH301-705.5, Medicine (General), R5-920

Relation: https://doi.org/10.15252/msb.20209816; https://doaj.org/toc/1744-4292; https://doaj.org/article/1a921a416e01438aa5f2ba5d3fbc8538

الاتاحة: https://doi.org/10.15252/msb.20209816
https://doaj.org/article/1a921a416e01438aa5f2ba5d3fbc8538

المؤلفون: Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding

المصدر: BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)

مصطلحات موضوعية: Homology detection, Sequence search, Protein alignment, Algorithm, Profile HMM, SIMD, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-019-3019-7; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/59e6cde7518149c596f2e8cd8b7e6c97

المؤلفون: Tina Ukmar-Godec, Saskia Hutten, Matthew P. Grieshop, Nasrollah Rezaei-Ghaleh, Maria-Sol Cima-Omori, Jacek Biernat, Eckhard Mandelkow, Johannes Söding, Dorothee Dormann, Markus Zweckstetter

المصدر: Nature Communications, Vol 10, Iss 1, Pp 1-15 (2019)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/ba5821511fba49e2bd2ace00270992df

المؤلفون: Jinmi Choi, Kseniia Lysakovskaia, Gregoire Stik, Carina Demel, Johannes Söding, Tian V Tian, Thomas Graf, Patrick Cramer

المصدر: eLife, Vol 10 (2021)

مصطلحات موضوعية: transdifferentiation, transcriptional regulation, enhancer cooperation, c/ebpa, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/65381; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/2e012031dc084c85b1add7b680e595bb

المؤلفون: Saikat Banerjee (473461), Franco L. Simonetti (6069476), Kira E. Detrois (10760817), Anubhav Kaphle (10760820), Raktim Mitra (6554609), Rahul Nagial (10760823), Johannes Söding (10760826)

مصطلحات موضوعية: Genetics, novel unsupervised k-nearest neighb., aggregating evidence, Many overlap, trans-eQTLs Abstract Trans-acting e., expression correlations, tissue-specific transcriptional reg., multiple-testing burden, trait loci, 49 tissues, Tejaa, regression increases power, disease-associated SNPs, effect sizes, tissue specificity

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_Tejaas_reverse_regression_increases_power_for_detecting_trans-eQTLs/14551848

الاتاحة: https://doi.org/10.6084/m9.figshare.14551848.v1

المؤلفون: Saikat Banerjee (473461), Franco L. Simonetti (6069476), Kira E. Detrois (10760817), Anubhav Kaphle (10760820), Raktim Mitra (6554609), Rahul Nagial (10760823), Johannes Söding (10760826)

مصطلحات موضوعية: Genetics, novel unsupervised k-nearest neighb., aggregating evidence, Many overlap, trans-eQTLs Abstract Trans-acting e., expression correlations, tissue-specific transcriptional reg., multiple-testing burden, trait loci, 49 tissues, Tejaa, regression increases power, disease-associated SNPs, effect sizes, tissue specificity

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Tejaas_reverse_regression_increases_power_for_detecting_trans-eQTLs/14551851

الاتاحة: https://doi.org/10.6084/m9.figshare.14551851.v1

المؤلفون: Milot Mirdita, Martin Steinegger, larsdriesch, ClovisG, Eli Levy Karin, RuoshiZ, Annika Jochheim, Clovis Norroy, Hans-Georg Sommer, Luna Jang (Sung-eun Jang), Florian Breitwieser, Hyun Joo Ji, Michael R. Crusoe, Johannes Soeding, Shyam Saladi, Joey Lee, Valentyn Bezshapkin, Johannes Spies, cutecutecat, Woosub-Kim, Tony E Lewis, Stephanie Kim, Silas Kieser, Sascha Steinbiss, Nathan Weeks, Mark Wilson, Luiz Irber, Huan Fan, George Young, Dohyun Kim

Relation: https://github.com/soedinglab/MMseqs2/tree/16-747c6; https://doi.org/10.5281/zenodo.839602; https://doi.org/10.5281/zenodo.14223631; oai:zenodo.org:14223631

الاتاحة: https://doi.org/10.5281/zenodo.14223631

المؤلفون: Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, Foldit Players consortium, Silvia N. Crivelli

المصدر: Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2045-2322

URL الوصول: https://doaj.org/article/b0b847aec1154062a3c86bac14d94e55

المؤلفون: Martin Steinegger, Johannes Söding

المصدر: Nature Communications, Vol 9, Iss 1, Pp 1-8 (2018)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/01cb78641dc94c18a3dea062537719c0

المؤلفون: Michel van Kempen, Stephanie S. Kim, Charlotte Tumescheit, Milot Mirdita, Jeongjae Lee, Cameron L.M. Gilchrist, Johannes Söding, Martin Steinegger

المصدر: Nature Biotechnology

مصطلحات موضوعية: Biomedical Engineering, Molecular Medicine, Bioengineering, Applied Microbiology and Biotechnology, Biotechnology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89f8b03e3f64bdad7f405caf535b2f24
https://doi.org/10.1038/s41587-023-01773-0

المؤلفون: Salma Sohrabi-Jahromi, Katharina B Hofmann, Andrea Boltendahl, Christian Roth, Saskia Gressel, Carlo Baejen, Johannes Soeding, Patrick Cramer

المصدر: eLife, Vol 8 (2019)

مصطلحات موضوعية: Saccharomyces cerevisiae, RNA degradation, PAR-CLIP, transcriptome maps, Medicine, Science, Biology (General), QH301-705.5

Relation: https://elifesciences.org/articles/47040; https://doaj.org/toc/2050-084X; e47040; https://doaj.org/article/b486fb8aa35341239e511e3025a5f623

الاتاحة: https://doi.org/10.7554/eLife.47040
https://doaj.org/article/b486fb8aa35341239e511e3025a5f623

المؤلفون: Saikat Banerjee, Lingyao Zeng, Heribert Schunkert, Johannes Söding

المصدر: PLoS Genetics, Vol 14, Iss 12, p e1007856 (2018)

مصطلحات موضوعية: Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

URL الوصول: https://doaj.org/article/19cd8f384cb8424685498d32acf48735

المؤلفون: Susann Vorberg, Stefan Seemayer, Johannes Söding

المصدر: PLoS Computational Biology, Vol 14, Iss 11, p e1006526 (2018)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC6237422?pdf=render; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/fad1e05ac1644b48ae6ee52a0177dec7

المؤلفون: Venket Raghavan, Gregor Eichele, Otto Larink, Eli Levy Karin, Johannes Söding

المصدر: NAR: genomics and bioinformatics

مصطلحات موضوعية: Structural Biology, Applied Mathematics, Genetics, Molecular Biology, Computer Science Applications

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1751dc6959b29bf294d110abaea2469a
https://hdl.handle.net/21.11116/0000-000C-AB30-D21.11116/0000-000C-AB32-B

المؤلفون: Milot Mirdita, Martin Steinegger, larsdriesch, ClovisG, Eli Levy Karin, RuoshiZ, Annika Jochheim, Clovis Norroy, Hans-Georg Sommer, Florian Breitwieser, Hayden Hyunjoo Ji, Johannes Soeding, Michael R. Crusoe, Shyam Saladi, Valentyn Bezshapkin, Antonio Fernandez-Guerra, Antônio Camargo, Benjamin Lee, Dohyun Kim, George Young, Huan Fan, Luiz Irber, Mark Wilson, Sascha Steinbiss, Silas Kieser, Stephanie Kim, Tony E Lewis, cutecutecat, neftlon

Relation: https://github.com/soedinglab/MMseqs2/tree/15-6f452; https://doi.org/10.5281/zenodo.839602; https://doi.org/10.5281/zenodo.10057276; oai:zenodo.org:10057276

الاتاحة: https://doi.org/10.5281/zenodo.10057276

المؤلفون: Yaoqi Zhou, Andrzej Kloczkowski, Johannes Söding, Milot Mirdita, Lukasz Kurgan, Zoran Obradovic, Martin Steinegger, Akila Katuwawala, A. Keith Dunker, Jörg Gsponer, Eshel Faraggi, Bi Zhao, Christopher J. Oldfield, Nawar Malhis

المصدر: Nucleic Acids Research

مصطلحات موضوعية: Proteome, AcademicSubjects/SCI00010, Biology, computer.software_genre, Protein Structure, Secondary, 03 medical and health sciences, Protein sequencing, Protein structure, Sequence Analysis, Protein, Genetics, Database Issue, Animals, Humans, Amino Acid Sequence, Amino Acids, Databases, Protein, Peptide sequence, Protein secondary structure, Conserved Sequence, 030304 developmental biology, chemistry.chemical_classification, 0303 health sciences, Internet, Binding Sites, Genome, Database, Bacteria, 030302 biochemistry & molecular biology, Fungi, Proteins, Accession number (bioinformatics), Plants, Archaea, Amino acid, chemistry, Prokaryotic Cells, Viruses, UniProt, computer, Software, Protein Binding

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5532799427c4aea84e9ae9e5cf3d8db5
http://europepmc.org/articles/PMC7778963

المؤلفون: Anna V, Luebben, Daniel, Bender, Stefan, Becker, Lisa M, Crowther, Ilka, Erven, Kay, Hofmann, Johannes, Söding, Henry, Klemp, Cristina, Bellotti, Andreas, Stäuble, Tian, Qiu, Rahul S, Kathayat, Bryan C, Dickinson, Jutta, Gärtner, George M, Sheldrick, Ralph, Krätzner, Robert, Steinfeld

المصدر: Science advances. 8(15)

مصطلحات موضوعية: Neuronal Ceroid-Lipofuscinoses, Humans, Lysosome-Associated Membrane Glycoproteins, Membrane Proteins, Cysteine, Child

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::e3ef7c7a7e2eeb9375abdefcbc5c19ab
https://pubmed.ncbi.nlm.nih.gov/35427157