المؤلفون: Attila Kertesz-Farkas (1337682), Frank Lawrence Nii Adoquaye Acquaye (14327835), Kishankumar Bhimani (14327838), Jimmy K. Eng (2087374), William E. Fondrie (1505692), Charles Grant (51060), Michael R. Hoopmann (219617), Andy Lin (132967), Yang Y. Lu (7373168), Robert L. Moritz (473706), Michael J. MacCoss (125430), William Stafford Noble (25740)

مصطلحات موضوعية: Biochemistry, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, three new tools, recently implemented speedups, published since 2014, new score function, new features include, mass spectrometry data, linked mass spectra, empirical results demonstrating, developments since 2014, tide search engine, sequence database, searching cross, many publications, comprehensive summary

Relation: https://figshare.com/articles/journal_contribution/The_Crux_Toolkit_for_Analysis_of_Bottom-Up_Tandem_Mass_Spectrometry_Proteomics_Data/21815070

الاتاحة: https://doi.org/10.1021/acs.jproteome.2c00615.s001

المؤلفون: Ian R. Smith, Jimmy K. Eng, Anthony S. Barente, Alexander Hogrebe, Ariadna Llovet, Ricard A. Rodriguez-Mias, Judit Villén

المصدر: Analytical Chemistry. 94:15198-15206

مصطلحات موضوعية: Proteomics, Proteome, Tandem Mass Spectrometry, Isotope Labeling, Peptides, Peptide Fragments, Analytical Chemistry

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::22c59d9c3c6063eee2b624882d029831
https://doi.org/10.1021/acs.analchem.2c01711

المؤلفون: Hong Peng, Sheng Pan, Yuanqing Yan, Randall E. Brand, Gloria M. Petersen, Suresh T. Chari, Lisa A. Lai, Jimmy K. Eng, Teresa A. Brentnall, Ru Chen

المصدر: Cancers; Volume 12; Issue 6; Pages: 1534

مصطلحات موضوعية: proteomics, pancreatic cancer, pancreatic ductal adenocarcinoma, diabetes, mass spectrometry, plasma, biomarker

وصف الملف: application/pdf

Relation: https://dx.doi.org/10.3390/cancers12061534

الاتاحة: https://doi.org/10.3390/cancers12061534

المؤلفون: Xia Wu, Juan D. Chavez, Devin K. Schweppe, Chunxiang Zheng, Chad R. Weisbrod, Jimmy K. Eng, Ananya Murali, Samuel A. Lee, Elizabeth Ramage, Larry A. Gallagher, Hemantha D. Kulasekara, Mauna E. Edrozo, Cassandra N. Kamischke, Mitchell J. Brittnacher, Samuel I. Miller, Pradeep K. Singh, Colin Manoil, James E. Bruce

المصدر: Nature Communications, Vol 7, Iss 1, Pp 1-14 (2016)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/1333b90e086549de845305809266c010

المؤلفون: Eric W. Deutsch, Luis Mendoza, David D. Shteynberg, Michael R. Hoopmann, Zhi Sun, Jimmy K. Eng, Robert L. Moritz

المصدر: J Proteome Res

مصطلحات موضوعية: General Chemistry, Biochemistry, Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::00d78596ea0049f81423b7346c316b99
https://europepmc.org/articles/PMC10166710/

المؤلفون: Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K. Eng, William E. Fondrie, Charles Grant, Michael R. Hoopmann, Andy Lin, Yang Y. Lu, Robert L. Moritz, Michael J. MacCoss, William Stafford Noble

المصدر: J Proteome Res

مصطلحات موضوعية: General Chemistry, Biochemistry, Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f13d84e302771bd345ffba29ac556b8c
https://doi.org/10.1101/2022.10.02.510538

المؤلفون: Juan D Chavez, Jimmy K Eng, Devin K Schweppe, Michelle Cilia, Keith Rivera, Xuefei Zhong, Xia Wu, Terrence Allen, Moshe Khurgel, Akhilesh Kumar, Athanasios Lampropoulos, Mårten Larsson, Shuvadeep Maity, Yaroslav Morozov, Wimal Pathmasiri, Mathew Perez-Neut, Coriness Pineyro-Ruiz, Elizabeth Polina, Stephanie Post, Mark Rider, Dorota Tokmina-Roszyk, Katherine Tyson, Debora Vieira Parrine Sant'Ana, James E Bruce

المصدر: PLoS ONE, Vol 11, Iss 12, p e0167547 (2016)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC5172568?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/3ba39bd136884daab38534c011a3f079

المؤلفون: Jimmy K. Eng, Xuefei Zhong, Andrew Keller, Devin K. Schweppe, Martin Mathay, Xia Wu, Juan D. Chavez, James E. Bruce

المصدر: J Am Soc Mass Spectrom

مصطلحات موضوعية: Acinetobacter baumannii, Models, Molecular, Protein Conformation, Lysine, 010402 general chemistry, 01 natural sciences, Article, Mass Spectrometry, beta-Lactamases, Bacterial Proteins, Structural Biology, Molecular evolution, Protein Interaction Domains and Motifs, Amino Acid Sequence, Protein Interaction Maps, Conserved Sequence, Spectroscopy, chemistry.chemical_classification, Strain (chemistry), biology, 010401 analytical chemistry, Periplasmic space, bacterial infections and mycoses, biology.organism_classification, 0104 chemical sciences, Cross-Linking Reagents, Enzyme, chemistry, Biochemistry, bacteria, Bacterial outer membrane, Function (biology), Bacterial Outer Membrane Proteins

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7628985e9f86e12301e1fb0920d769b2
https://doi.org/10.1021/jasms.9b00021

المؤلفون: Y Shi, Jan-Marino Ramirez, Nicholas P. Poolos, Jimmy K. Eng, Jeffrey G. Ojemann, M.N. Khan, F.A. Concepcion, Aguan Wei, J-D Ju Wang, Andrew L. Ko

المصدر: Neuroscience

مصطلحات موضوعية: 0301 basic medicine, Male, Potassium Channels, Cyclic Nucleotide-Gated Cation Channels, Gating, Status epilepticus, Hippocampal formation, Epileptogenesis, Mass Spectrometry, Article, Rats, Sprague-Dawley, 03 medical and health sciences, Epilepsy, 0302 clinical medicine, medicine, HCN channel, Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels, Animals, Humans, Phosphorylation, biology, Chemistry, General Neuroscience, Human brain, medicine.disease, Cell biology, Rats, 030104 developmental biology, medicine.anatomical_structure, Epilepsy, Temporal Lobe, biology.protein, medicine.symptom, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc306a4a637ecaaa605c059a8b832b03
https://pubmed.ncbi.nlm.nih.gov/33571596

المؤلفون: Jimmy K. Eng, Eric W. Deutsch

المصدر: Proteomics

مصطلحات موضوعية: Proteomics, 0303 health sciences, NeXtProt, Sequence database, Proteomics Standards Initiative, Proteome, Computer science, 030302 biochemistry & molecular biology, FASTA format, Computational biology, Biochemistry, Post Translational Modification Analysis, Article, 03 medical and health sciences, HEK293 Cells, Human proteome project, Comet (programming), Humans, Amino Acids, Databases, Protein, Molecular Biology, Protein Processing, Post-Translational, Software, 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::165c763013f3199a96ae472f7ebaa001
https://europepmc.org/articles/PMC7483226/

المؤلفون: Vladimir Vigdorovich, Eric W. Deutsch, Kristian E. Swearingen, D. Noah Sather, Luis Mendoza, Robert L. Moritz, Jimmy K. Eng, Timothy A. Springer, Stefan H. I. Kappe, David Shteynberg

المصدر: Journal of Proteome Research. 18:652-663

مصطلحات موضوعية: Proteomics, 0301 basic medicine, Plasmodium, Glycan, Glycosylation, Tandem mass spectrometry, Mass spectrometry, Biochemistry, Article, 03 medical and health sciences, chemistry.chemical_compound, Tandem Mass Spectrometry, Databases, Protein, Fucose, Chromatography, 030102 biochemistry & molecular biology, Sequence database, biology, Chemistry, General Chemistry, Search Engine, Electron-transfer dissociation, 030104 developmental biology, Mass spectrum, biology.protein, Peptides

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f586686b7d975fc26df694ec00437138
https://doi.org/10.1021/acs.jproteome.8b00638

المؤلفون: Jimmy K. Eng, Zorian Thornton, Juan D. Chavez, Andrew Keller, James E. Bruce

المصدر: Journal of Proteome Research. 18:753-758

مصطلحات موضوعية: Models, Molecular, Proteomics, 0301 basic medicine, 030102 biochemistry & molecular biology, Protein Conformation, Rapid expansion, Computer science, Quantitative proteomics, Computational Biology, Proteins, General Chemistry, Computational biology, Biochemistry, Interactome, Article, Visualization, Protein–protein interaction, 03 medical and health sciences, 030104 developmental biology, Dynamic modulation, Protein Interaction Networks, Protein Interaction Mapping, Humans, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7760d31fc0cfb0a84bae0c85535633e
https://doi.org/10.1021/acs.jproteome.8b00703

المؤلفون: James E. Bruce, Poorna Perumalla, Jimmy K. Eng, Juan D. Chavez, Jared P. Mohr

المصدر: Analytical Chemistry. 90:6028-6034

مصطلحات موضوعية: 0301 basic medicine, chemistry.chemical_classification, Collision-induced dissociation, Peptide, Computational biology, Proteomics, Tandem mass spectrometry, Mass spectrometry, Analytical Chemistry, 03 medical and health sciences, Search engine, 030104 developmental biology, Protein structure, chemistry, Proteome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::90e8470d2f20e3e7f3ad38143cdba312
https://doi.org/10.1021/acs.analchem.7b04991

المؤلفون: Vagisha Sharma, Jimmy K. Eng, Sergey Feldman, Priska D. Von Haller, Michael J. Maccoss, William S. Noble

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://noble.gs.washington.edu/papers/sharma2010precursor.pdf.

مصطلحات موضوعية: electron transfer dissociation • charge state prediction • support vector machine • tandem

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.456.1771; http://noble.gs.washington.edu/papers/sharma2010precursor.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.456.1771
http://noble.gs.washington.edu/papers/sharma2010precursor.pdf

المؤلفون: Jeffrey R. Whiteaker, Heidi Zhang, Jimmy K. Eng, Ruihua Fang, Brian D. Piening, Amanda G. Paulovich*

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.plasmaproteome.org/Bios_and_bibliographies/PDF%27s/Head-to-head comparison of serum fractionation techniques-Whiteaker-2007-J Proteome Res.pdf.

مصطلحات موضوعية: biomarker ¥ human serum ¥ human plasma ¥ fractionation ¥ immunoaffinity depletion ¥ LC/MS

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.605.7757; http://www.plasmaproteome.org/Bios_and_bibliographies/PDF%27s/Head-to-head comparison of serum fractionation techniques-Whiteaker-2007-J Proteome Res.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.605.7757
http://www.plasmaproteome.org/Bios_and_bibliographies/PDF%27s/Head-to-head comparison of serum fractionation techniques-Whiteaker-2007-J Proteome Res.pdf

المؤلفون: Linfeng Wu, Sun-il Hwang, Karim Rezaul, Long J. Lu, Viveka Mayya, Mark Gerstein, Jimmy K. Eng, Deborah H. Lundgren, David K. Han

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://papers.gersteinlab.org/e-print/proteomicsurvey/preprint.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.217.8897; http://papers.gersteinlab.org/e-print/proteomicsurvey/preprint.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.217.8897
http://papers.gersteinlab.org/e-print/proteomicsurvey/preprint.pdf

المؤلفون: Brendan Maclean, Jimmy K. Eng, Ronald C. Beavis, Martin Mcintosh

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://bioinformatics.oxfordjournals.org/content/22/22/2830.full.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.594.460; http://bioinformatics.oxfordjournals.org/content/22/22/2830.full.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.594.460
http://bioinformatics.oxfordjournals.org/content/22/22/2830.full.pdf

المؤلفون: Sun-il Hwang, Deborah H. Lundgren, Viveka Mayya, Karim Rezaul, Ann E. Cowan, Jimmy K. Eng, David K. Han

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.mcponline.org/cgi/reprint/5/6/1131.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.124.9445; http://www.mcponline.org/cgi/reprint/5/6/1131.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.124.9445
http://www.mcponline.org/cgi/reprint/5/6/1131.pdf

المؤلفون: Frédéric Schütz, Lisa M. Connolly, John A. Chakel, Jose E. Meza, Christine A. Miller, David Fenyo, Jimmy K. Eng, Joshua N. Adkins, Gilbert S. Omenn, Richard J. Simpson

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://fenyolab.org/publications/pdf/05_kapp_proteomics.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.476.8663; http://fenyolab.org/publications/pdf/05_kapp_proteomics.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.476.8663
http://fenyolab.org/publications/pdf/05_kapp_proteomics.pdf

المؤلفون: Qiuming Yao, Jimmy K. Eng, IV William Judson Hervey, David L. Tabb, Zhou Li, Chongle Pan, Xuan Guo, Ryan S. Mueller

المصدر: Bioinformatics

مصطلحات موضوعية: 0301 basic medicine, Statistics and Probability, Proteomics, Computer science, Peptide, Machine learning, computer.software_genre, Biochemistry, 03 medical and health sciences, Software, Comet (programming), Molecular Biology, chemistry.chemical_classification, Database, business.industry, Systems Biology, Microbiota, Filter (signal processing), Original Papers, Computer Science Applications, Search Engine, Computational Mathematics, Identification (information), 030104 developmental biology, Computational Theory and Mathematics, chemistry, Metagenomics, Metaproteomics, Artificial intelligence, Data mining, business, computer, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::646666b1d7e8ef7b977007aa895d1d71
http://europepmc.org/articles/PMC6192206