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1Academic Journal
المؤلفون: Nourani, Esmaeil, Makri, Evangelia-Mantelena, Mao, Xiqing, Pyysalo, Sampo, Brunak, Søren, Nastou, Katerina, Jensen, Lars Juhl
المساهمون: Novo Nordisk, Marie Sklodowska-Curie
المصدر: Database ; volume 2025 ; ISSN 1758-0463
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2
المؤلفون: Kukkonen-Macchi, Anu, Hautaniemi, Sampsa, Heil, Katharina F., Heinaniemi, Merja, Jensen, Lars Juhl, Junttila, Sini, Käll, Lukas, 1969, Laiho, Asta, Maccallum, Peter, Nykter, Matti, Persson, Bengt, Suomi, Tomi, Van den Bossche, Tim, Nyronen, Tommi H., Elo, Laura L.
المصدر: Bioinformatics. 40(Supplement_2)
وصف الملف: print
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3Academic Journal
المؤلفون: Koutrouli, Mikaela, Morris, John H, Jensen, Lars Juhl
المصدر: Protein Science. 31(9)
مصطلحات موضوعية: Biochemistry and Cell Biology, Medicinal and Biomolecular Chemistry, Chemical Sciences, Biological Sciences, Color, visualization, tool, single cell, omics, CIELAB, Computation Theory and Mathematics, Other Information and Computing Sciences, Biophysics, Biochemistry and cell biology, Medicinal and biomolecular chemistry
وصف الملف: application/pdf
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4Academic Journal
المصدر: Locard-Paulet , M , Doncheva , N T , Morris , J H & Jensen , L J 2024 , ' Functional Analysis of MS-Based Proteomics Data : From Protein Groups to Networks ' , Molecular and Cellular Proteomics , vol. 23 , no. 12 , 100871 . https://doi.org/10.1016/j.mcpro.2024.100871
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/functional-analysis-of-msbased-proteomics-data(995e0a87-5845-49a5-b0ad-78b116012a8d).html
https://doi.org/10.1016/j.mcpro.2024.100871
https://curis.ku.dk/ws/files/422332888/1_s2.0_S1535947624001610_main.pdf -
5Academic Journal
المصدر: Mehryary , F , Nastou , K , Ohta , T , Jensen , L J & Pyysalo , S 2024 , ' STRING-ing together protein complexes : corpus and methods for extracting physical protein interactions from the biomedical literature ' , Bioinformatics , vol. 40 , no. 9 , btae552 . https://doi.org/10.1093/bioinformatics/btae552
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/stringing-together-protein-complexes(983803c7-d57f-452e-9c12-ce2e5990ebf1).html
https://doi.org/10.1093/bioinformatics/btae552
https://curis.ku.dk/ws/files/411066229/btae552.pdf -
6Academic Journal
المصدر: Nastou , K , Koutrouli , M , Pyysalo , S & Jensen , L J 2024 , ' CoNECo : a Corpus for Named Entity recognition and normalization of protein Complexes ' , Bioinformatics Advances , vol. 4 , no. 1 , vbae116 . https://doi.org/10.1093/bioadv/vbae116
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/coneco(7fcbc747-71cd-4cc4-b2ed-d15b860343f0).html
https://doi.org/10.1093/bioadv/vbae116
https://curis.ku.dk/ws/files/411707411/vbae116.pdf -
7Academic Journal
المؤلفون: Nastou, Katerina, Mehryary, Farrokh, Ohta, Tomoko, Luoma, Jouni, Pyysalo, Sampo, Jensen, Lars Juhl
المصدر: Nastou , K , Mehryary , F , Ohta , T , Luoma , J , Pyysalo , S & Jensen , L J 2024 , ' RegulaTome : a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature ' , Database , vol. 2024 , baae095 . https://doi.org/10.1093/database/baae095
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/regulatome(2e8bd44e-4949-4ff2-bce6-c7e32e0b04ca).html
https://doi.org/10.1093/database/baae095
https://curis.ku.dk/ws/files/407312700/baae095.pdf -
8Academic Journal
المؤلفون: Mazein, Ilya, Rougny, Adrien, Mazein, Alexander, Henkel, Ron, Gütebier, Lea, Michaelis, Lea, Ostaszewski, Marek, Schneider, Reinhard, Satagopam, Venkata, Jensen, Lars Juhl, Waltemath, Dagmar, Wodke, Judith A.H., Balaur, Irina
المصدر: Mazein , I , Rougny , A , Mazein , A , Henkel , R , Gütebier , L , Michaelis , L , Ostaszewski , M , Schneider , R , Satagopam , V , Jensen , L J , Waltemath , D , Wodke , J A H & Balaur , I 2024 , ' Graph databases in systems biology : A systematic review ' , Briefings in Bioinformatics , vol. 25 , no. 6 , bbae561 . https://doi.org/10.1093/bib/bbae561
مصطلحات موضوعية: graph databases, network biology, NoSQL databases, ontology, RDF, systems biology
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/graph-databases-in-systems-biology(045fb246-d51f-4fe4-81fd-444151ecc592).html
https://doi.org/10.1093/bib/bbae561
https://curis.ku.dk/ws/files/421125366/Graph_databases_in_systems_biology.pdf -
9Academic Journal
المؤلفون: Batth, Tanveer Singh, Locard-Paulet, Marie, Doncheva, Nadezhda T., Lopez Mendez, Blanca, Jensen, Lars Juhl, Olsen, Jesper Velgaard
المصدر: Batth , T S , Locard-Paulet , M , Doncheva , N T , Lopez Mendez , B , Jensen , L J & Olsen , J V 2024 , ' Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement ' , Nature Communications , vol. 15 , no. 1 , 8923 . https://doi.org/10.1038/s41467-024-53240-2
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/streamlined-analysis-of-drug-targets-by-proteome-integral-solubility-alteration-indicates-organspecific-engagement(cbee811e-0a17-444d-88ff-bd1834ae5d43).html
https://doi.org/10.1038/s41467-024-53240-2
https://curis.ku.dk/ws/files/411065924/s41467_024_53240_2.pdf -
10Academic Journal
المؤلفون: Nourani, Esmaeil, Koutrouli, Mikaela, Xie, Yijia, Vagiaki, Danai, Pyysalo, Sampo, Nastou, Katerina, Brunak, Søren, Jensen, Lars Juhl
المصدر: Nourani , E , Koutrouli , M , Xie , Y , Vagiaki , D , Pyysalo , S , Nastou , K , Brunak , S & Jensen , L J 2024 , ' Lifestyle factors in the biomedical literature : an ontology and comprehensive resources for named entity recognition ' , Bioinformatics , vol. 40 , no. 11 , btae613 . https://doi.org/10.1093/bioinformatics/btae613
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/lifestyle-factors-in-the-biomedical-literature(375eb666-c7e5-4d87-ac78-0ff80afa7f8c).html
https://doi.org/10.1093/bioinformatics/btae613
https://curis.ku.dk/ws/files/412462006/btae613.pdf -
11Academic Journal
المصدر: Nastou , K , Koutrouli , M , Pyysalo , S & Jensen , L J 2024 , ' Improving dictionary-based named entity recognition with deep learning ' , Bioinformatics , vol. 40 , pp. ii45-ii52 . https://doi.org/10.1093/bioinformatics/btae402
وصف الملف: application/pdf
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12Academic Journal
المؤلفون: Webel, Henry, Niu, Lili, Nielsen, Annelaura, Bach, Locard-Paulet, Marie, Mann, Matthias, Jensen, Lars, Juhl, Rasmussen, Simon
المساهمون: IT University of Copenhagen (ITU), Institut de pharmacologie et de biologie structurale (IPBS), Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Max-Planck-Institut für Biochemie = Max Planck Institute of Biochemistry (MPIB), Max-Planck-Gesellschaft, Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School Boston (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital Boston
المصدر: ISSN: 2041-1723.
مصطلحات موضوعية: MESH: Deep Learning, MESH: Humans, MESH: Male, MESH: Mass Spectrometry / methods, MESH: Proteomics / methods, MESH: Supervised Machine Learning, [SDV.SP]Life Sciences [q-bio]/Pharmaceutical sciences
Relation: info:eu-repo/semantics/altIdentifier/pmid/38926340; PUBMED: 38926340; PUBMEDCENTRAL: PMC11208500
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13Academic Journal
مصطلحات موضوعية: biomedical relation extraction, STRING database, physical protein-protein interactions, complex formation
Relation: https://zenodo.org/communities/eu; https://doi.org/10.5281/zenodo.8139716; https://doi.org/10.5281/zenodo.10693924; oai:zenodo.org:10693924
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14Academic Journal
المؤلفون: Thiele, Maja, Villesen, Ida Falk, Niu, Lili, Johansen, Stine, Sulek, Karolina, Nishijima, Suguru, Espen, Lore Van, Keller, Marisa, Israelsen, Mads, Suvitaival, Tommi, Zawadzki, Andressa de, Juel, Helene Bæk, Brol, Maximilian Joseph, Stinson, Sara Elizabeth, Huang, Yun, Silva, Maria Camilla Alvarez, Kuhn, Michael, Anastasiadou, Ema, Leeming, Diana Julie, Karsdal, Morten, Matthijnssens, Jelle, Arumugam, Manimozhiyan, Dalgaard, Louise Torp, Legido-Quigley, Cristina, Mann, Matthias, Trebicka, Jonel, Bork, Peer, Jensen, Lars Juhl, Hansen, Torben, Krag, Aleksander
المصدر: MicrobLiver consortium , GALAXY consortium , Thiele , M , Villesen , I F , Niu , L , Johansen , S , Sulek , K , Nishijima , S , Espen , L V , Keller , M , Israelsen , M , Suvitaival , T , Zawadzki , A D , Juel , H B , Brol , M J , Stinson , S E , Huang , Y , Silva , M C A , Kuhn , M , Anastasiadou , E , Leeming , D J , Karsdal , M , Matthijnssens , J , ....
مصطلحات موضوعية: genetics, lipidomics, metabolomics, metagenomics, metatranscriptomics, microbiome, Non-invasive test, proteomics, viromics
وصف الملف: application/pdf
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15Academic Journal
المؤلفون: Israelsen, Mads, Alvarez-Silva, Camila, Madsen, Bjørn Stæhr, Hansen, Camilla Dalby, Torp, Nikolaj Christian, Johansen, Stine, Hansen, Johanne Kragh, Prier Lindvig, Katrine, Insonere, Jeanlouis, Riviere, Virginie, Juel, Helene Bæk, Brejnrod, Asker, Jensen, Lars Juhl, Thiele, Maja, Lelouvier, Benjamin, Hansen, Torben, Arumugam, Manimozhiyan, Krag, Aleksander, MicrobLiver consortium, GALAXY consortium, Bork, Peer, Mann, Mathias, Matthijnssens, Jelle, Anastasiadou, Ema, Arumugam, Manimozhian, Henrar, Roland, Israelsen, Hans, Karsdal, Morten, Legido-Quigley, Cristina, Melberg, Hans Olav, Trebicka, Jonel
مصطلحات موضوعية: PostScript
وصف الملف: text/html
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16Academic Journal
المؤلفون: Koutrouli, Mikaela, Nastou, Katerina, Piera Líndez, Pau, Bouwmeester, Robbin, Rasmussen, Simon, Martens, Lennart, Jensen, Lars Juhl
المصدر: Koutrouli , M , Nastou , K , Piera Líndez , P , Bouwmeester , R , Rasmussen , S , Martens , L & Jensen , L J 2024 , ' FAVA : High-quality functional association networks inferred from scRNA-seq and proteomics data ' , Bioinformatics , vol. 40 , no. 2 , btae010 . https://doi.org/10.1093/bioinformatics/btae010
وصف الملف: application/pdf
الاتاحة: https://researchprofiles.ku.dk/da/publications/fava(b68012cd-9a70-427d-8b42-6762c5b270b3).html
https://doi.org/10.1093/bioinformatics/btae010
https://curis.ku.dk/ws/files/383092033/btae010.pdf -
17Academic Journal
المؤلفون: Oprea, Tudor I., Bologa, Cristian, Holmes, Jayme, Mathias, Stephen, Metzger, Vincent T., Waller, Anna, Yang, Jeremy J., Leach, Andrew R., Jensen, Lars Juhl, Kelleher, Keith J., Sheils, Timothy K., Mathé, Ewy, Avram, Sorin, Edwards, Jeremy S.
المصدر: Oprea , T I , Bologa , C , Holmes , J , Mathias , S , Metzger , V T , Waller , A , Yang , J J , Leach , A R , Jensen , L J , Kelleher , K J , Sheils , T K , Mathé , E , Avram , S & Edwards , J S 2024 , ' Overview of the Knowledge Management Center for Illuminating the Druggable Genome ' , Drug Discovery Today , vol. 29 , no. 3 , 103882 . https://doi.org/10.1016/j.drudis.2024.103882
مصطلحات موضوعية: database, druggable genome, knowledge management, pharos
وصف الملف: application/pdf
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18Academic Journal
المؤلفون: Metzger, Vincent T., Cannon, Daniel C., Yang, Jeremy J., Mathias, Stephen L., Bologa, Cristian G., Waller, Anna, Schürer, Stephan C., Vidović, Dušica, Kelleher, Keith J., Sheils, Timothy K, Jensen, Lars Juhl, Lambert, Christophe G., Oprea, Tudor I., Edwards, Jeremy S.
المصدر: Metzger , V T , Cannon , D C , Yang , J J , Mathias , S L , Bologa , C G , Waller , A , Schürer , S C , Vidović , D , Kelleher , K J , Sheils , T K , Jensen , L J , Lambert , C G , Oprea , T I & Edwards , J S 2024 , ' TIN-X version 3 : update with expanded dataset and modernized architecture for enhanced illumination of understudied targets ' , PeerJ , vol. 12 , e17470 . https://doi.org/10.7717/peerj.17470
مصطلحات موضوعية: Humans, User-Computer Interface, Natural Language Processing, PubMed, Software
وصف الملف: application/pdf
الاتاحة: https://curis.ku.dk/portal/da/publications/tinx-version-3(28c867b3-096d-4ea8-a76c-713a61710468).html
https://doi.org/10.7717/peerj.17470
https://curis.ku.dk/ws/files/400215618/peerj_17470.pdf -
19Academic Journal
المؤلفون: Legeay, Marc, Doncheva, Nadezhda T, Morris, John H, Jensen, Lars Juhl
مصطلحات موضوعية: Information and Computing Sciences, Biological Sciences, Bioinformatics and Computational Biology, Networking and Information Technology R&D (NITRD), Computational Biology, Data Visualization, Proteomics, Software, Cytoscape, app, network biology, network visualization, omics data, Biochemistry and Cell Biology, Clinical Sciences, Oncology and Carcinogenesis
وصف الملف: application/pdf
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20Academic Journal
المؤلفون: Diaz-Del Castillo, Marta, Palasca, Oana, Nemler, Tim T., Thygesen, Didde M., Chávez-Saldaña, Norma A., Vázquez-Mora, Juan A., Ponce Gomez, Lizeth Y., Jensen, Lars Juhl, Evans, Holly, Andrews, Rebecca E., Mandal, Aritri, Neves, David, Mehlen, Patrick, Caruso, James P., Dougherty, Patrick M., Price, Theodore J., Chantry, Andrew, Lawson, Michelle A., Andersen, Thomas L., Jimenez-Andrade, Juan M., Heegaard, Anne Marie
المصدر: Diaz-Del Castillo , M , Palasca , O , Nemler , T T , Thygesen , D M , Chávez-Saldaña , N A , Vázquez-Mora , J A , Ponce Gomez , L Y , Jensen , L J , Evans , H , Andrews , R E , Mandal , A , Neves , D , Mehlen , P , Caruso , J P , Dougherty , P M , Price , T J , Chantry , A , Lawson , M A , Andersen , T L , Jimenez-Andrade , J M & Heegaard , A M ....
مصطلحات موضوعية: cancer-pain, hematology, multiple myeloma, myeloma, pain, sprouting, Multiple Myeloma/complications, Bone Diseases, Humans, Male, Nerve Tissue/metabolism, Ganglia, Spinal/metabolism, Animals, Quality of Life, Mice, Pain/metabolism
وصف الملف: application/pdf