نتائج البحث - "Jennifer S. LoCoco"

1

Academic Journal

Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing

المصدر: Scientific Data, Vol 11, Iss 1, Pp 1-13 (2024)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2052-4463

URL الوصول: https://doaj.org/article/73cc5c3ee70441e7acfa9bce7c026093

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2

Academic Journal

Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples

المصدر: Genome Biology, Vol 23, Iss 1, Pp 1-21 (2022)

مصطلحات موضوعية: Cancer genomics, Next-generation sequencing, FFPE, Preanalytics, Precision medicine, Oncopanel sequencing, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/e207f3a869da4a6c9e54ed39c85b42dd

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3

Academic Journal

Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

المؤلفون: Binsheng Gong, Dan Li, Rebecca Kusko, Natalia Novoradovskaya, Yifan Zhang, Shangzi Wang, Carlos Pabón-Peña, Zhihong Zhang, Kevin Lai, Wanshi Cai, Jennifer S. LoCoco, Eric Lader, Todd A. Richmond, Vinay K. Mittal, Liang-Chun Liu, Donald J. Johann, James C. Willey, Pierre R. Bushel, Ying Yu, Chang Xu, Guangchun Chen, Daniel Burgess, Simon Cawley, Kristina Giorda, Nathan Haseley, Fujun Qiu, Katherine Wilkins, Hanane Arib, Claire Attwooll, Kevin Babson, Longlong Bao, Wenjun Bao, Anne Bergstrom Lucas, Hunter Best, Ambica Bhandari, Halil Bisgin, James Blackburn, Thomas M. Blomquist, Lisa Boardman, Blake Burgher, Daniel J. Butler, Chia-Jung Chang, Alka Chaubey, Tao Chen, Marco Chierici, Christopher R. Chin, Devin Close, Jeffrey Conroy, Jessica Cooley Coleman, Daniel J. Craig, Erin Crawford, Angela del Pozo, Ira W. Deveson, Daniel Duncan, Agda Karina Eterovic, Xiaohui Fan, Jonathan Foox, Cesare Furlanello, Abhisek Ghosal, Sean Glenn, Meijian Guan, Christine Haag, Xinyi Hang, Scott Happe, Brittany Hennigan, Jennifer Hipp, Huixiao Hong, Kyle Horvath, Jianhong Hu, Li-Yuan Hung, Mirna Jarosz, Jennifer Kerkhof, Benjamin Kipp, David Philip Kreil, Paweł Łabaj, Pablo Lapunzina, Peng Li, Quan-Zhen Li, Weihua Li, Zhiguang Li, Yu Liang, Shaoqing Liu, Zhichao Liu, Charles Ma, Narasimha Marella, Rubén Martín-Arenas, Dalila B. Megherbi, Qingchang Meng, Piotr A. Mieczkowski, Tom Morrison, Donna Muzny, Baitang Ning, Barbara L. Parsons, Cloud P. Paweletz, Mehdi Pirooznia, Wubin Qu, Amelia Raymond, Paul Rindler, Rebecca Ringler, Bekim Sadikovic, Andreas Scherer, Egbert Schulze, Robert Sebra, Rita Shaknovich, Qiang Shi, Tieliu Shi, Juan Carlos Silla-Castro, Melissa Smith, Mario Solís López, Ping Song, Daniel Stetson, Maya Strahl, Alan Stuart, Julianna Supplee, Philippe Szankasi, Haowen Tan, Lin-ya Tang, Yonghui Tao, Shraddha Thakkar, Danielle Thierry-Mieg, Jean Thierry-Mieg, Venkat J. Thodima, David Thomas, Boris Tichý, Nikola Tom, Elena Vallespin Garcia, Suman Verma, Kimbley Walker, Charles Wang, Junwen Wang, Yexun Wang, Zhining Wen, Valtteri Wirta, Leihong Wu, Chunlin Xiao, Wenzhong Xiao, Shibei Xu, Mary Yang, Jianming Ying, Shun H. Yip, Guangliang Zhang, Sa Zhang, Meiru Zhao, Yuanting Zheng, Xiaoyan Zhou, Christopher E. Mason, Timothy Mercer, Weida Tong, Leming Shi, Wendell Jones, Joshua Xu

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-23 (2021)

مصطلحات موضوعية: Oncopanel sequencing, Target enrichment, Molecular diagnostics, Reproducibility, Analytical performance, Precision medicine, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/c5365bb671514dddbb3d5b324f62ed28

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4

Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

المؤلفون: Agda Karina Eterovic, Rebecca Ringler, Binsheng Gong, Jiashi Wang, Christopher E. Mason, Garima Kushwaha, Abhisek Ghosal, James C. Willey, Zhihong Zhang, Wenzhong Xiao, Natalia Novoradovskaya, Joshua Xu, Mary Yang, Zhiguang Li, Leihong Wu, Philippe Szankasi, Paul Rindler, Suman Verma, Simon Cawley, Daniel Stetson, Yilin Zhang, Fergal Casey, Nathan Haseley, Fujun Qiu, Paula Proszek, Mirna Jarosz, Ira W. Deveson, Kevin Lai, Donald J. Johann, Rebecca Kusko, Haowen Tan, Tim R. Mercer, Chia Jung Chang, Kristina Giorda, Tieliu Shi, Blake Burgher, Kyle Horvath, Leming Shi, Pierre R. Bushel, Guangchun Chen, Melissa Smith, Igor Stevanovski, Devin W. Close, Liang Feng, Lin-ya Tang, Liang-Chun Liu, Todd Richmond, Wendell D. Jones, Daniel Duncan, Andreas Scherer, Jorge Dinis, Chang Xu, Rita Shaknovich, Tom Morrison, Ping Song, Nikola Tom, Weida Tong, Quan Zhen Li, Lihyun Sun, Charles Ma, Dalila B. Megherbi, Robert Sebra, Sean Glenn, Narasimha Marella, Ambica Bhandari, Jennifer S. LoCoco, Zhichao Liu, Jeoffrey Schageman, Mehdi Pirooznia, Scott Happe, Hanane Arib, Maya Strahl, Dan Li, Hunter Best, Venkat J. Thodima, Amelia Raymond, Jeffrey Conroy, Mike Hubank, Piotr A. Mieczkowski, Carlos Pabón-Peña, James Blackburn, Li-Yuan Hung, Sa Zhang, Bindu Swapna Madala, Guangliang Zhang, Jonathan Choi

المصدر: Nature biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f3d76ae77be6b6d242d19ba6f29eaf8
http://europepmc.org/articles/PMC8434938

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5

Deep oncopanel sequencing reveals fixation time- and within block position-dependent quality degradation in FFPE processed samples

مصطلحات موضوعية: Normal cell, Tissue sections, Mutation detection, Fixation time, Computational biology, Biology, Patient response, Position dependent, Deep sequencing, Block (data storage)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::8e88fa5befa151c526a2db9a08258111
https://doi.org/10.1101/2021.04.06.438687

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6

Blood-based detection of actionable alterations from NCI-MATCH patients with no tissue results

المؤلفون: Robin Harrington, Amanda Peach, D'Andra Howell, Biswajit Das, Rini Pauly, Ting-Chia Chang, Jennifer S. LoCoco, Li Chen, Shahanawaz Jiwani, Jennifer Lee, Lisa McShane, Alice P. Chen, Phillip G. Febbo, Traci L. Pawlowski, Naoko Takebe, James V. Tricoli, James H. Doroshow, Paul M. Williams, Chris Alan Karlovich

المصدر: Journal of Clinical Oncology. 40:3035-3035

مصطلحات موضوعية: Cancer Research, Oncology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::7c703051ac5bc59c81c84a7826663ba2
https://doi.org/10.1200/jco.2022.40.16_suppl.3035

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7

Advancing Quality-Control for NGS Measurement of Actionable Mutations in Circulating Tumor DNA

المصدر: SSRN Electronic Journal.

مصطلحات موضوعية: Mutation, Current practice, Computer science, Circulating tumor DNA, medicine, Variant allele, Computational biology, Liquid biopsy, medicine.disease_cause, Dna testing, Precision medicine, DNA sequencing

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7e9c65df9e6a8769df76f7006b1c126
https://doi.org/10.2139/ssrn.3830017

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8

Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

المصدر: Cell Reports Methods. 1:100106

مصطلحات موضوعية: Mutation, Computer science, Library preparation, Hybrid capture, Computational biology, Variant allele, medicine.disease_cause, Precision medicine, Biochemistry, Genetics and Molecular Biology (miscellaneous), Biochemistry, Computer Science Applications, Current practice, Circulating tumor DNA, Genetics, medicine, Radiology, Nuclear Medicine and imaging, Liquid biopsy, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b5b8d7cae711a7656294b3276c03c31
https://doi.org/10.1016/j.crmeth.2021.100106

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9

Evaluation of microsatellite instability testing through cell-free DNA sequencing

المؤلفون: Y. Fu, Shile Zhang, Sigrid Katz, Jennifer S. LoCoco, Chen Zhao, Tingting Jiang, Sven Bilke, Traci Pawlowski, Brian Crain, Kristina M. Kruglyak, A. Mentzer, G. Berry

المصدر: Annals of Oncology. 30:v35

مصطلحات موضوعية: Oncology, medicine.medical_specialty, Genomic profiling, business.industry, Treatment choices, Concordance, Microsatellite instability, Tumor cells, Hematology, medicine.disease, digestive system diseases, Lynch syndrome, Cell-free fetal DNA, Circulating tumor DNA, Internal medicine, medicine, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::958b871e2d465b631817b419e407c45a
https://doi.org/10.1093/annonc/mdz239.026

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10

Development and analytical validation of a 523-gene clinical assay for cell-free DNA

المصدر: Journal of Clinical Oncology. 37:3039-3039

مصطلحات موضوعية: Cancer Research, Oncology, Cell-free fetal DNA, business.industry, Gene panel, medicine, Cancer, Computational biology, medicine.disease, business, Gene, Complement (complexity)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::5d117720396e14e659d53fdc32099117
https://doi.org/10.1200/jco.2019.37.15_suppl.3039

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11

Accurate measurement of tumor mutation burden in liquid biopsy (bTMB) using a 500 gene panel

المؤلفون: D. Baker, Chen Zhao, Phillip Le, Jennifer S. LoCoco, Sigrid Katz, Tingting Jiang, Sven Bilke, B. Andrian, A. Jager, Traci Pawlowski, Shile Zhang

المصدر: Annals of Oncology. 29:viii51

مصطلحات موضوعية: 0301 basic medicine, business.industry, Hematology, 03 medical and health sciences, 030104 developmental biology, 0302 clinical medicine, Oncology, 030220 oncology & carcinogenesis, Gene panel, Mutation (genetic algorithm), Cancer research, Medicine, Liquid biopsy, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::de04184c7ac268c3ed204c520fe252c6
https://doi.org/10.1093/annonc/mdy269.161

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12

Abstract 3732: Analytical performance of TruSight® Tumor 170 on small nucleotide variations and gene amplifications using DNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

المصدر: Cancer Research. 77:3732-3732

مصطلحات موضوعية: 0301 basic medicine, Genetics, Cancer Research, Base pair, Locus (genetics), Biology, 03 medical and health sciences, chemistry.chemical_compound, Exon, 030104 developmental biology, 0302 clinical medicine, Oncology, chemistry, 030220 oncology & carcinogenesis, Gene duplication, Allele, Indel, Gene, DNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::9d330941bbdd615b807b558f7e017bce
https://doi.org/10.1158/1538-7445.am2017-3732

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13

Abstract 565: Analytical performance of TruSight® Tumor 170 in the detection of gene fusions and splice variants using RNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples

المصدر: Cancer Research. 77:565-565

مصطلحات موضوعية: Genetics, Cancer Research, biology, Alternative splicing, RNA, chemistry.chemical_compound, Oncology, chemistry, Chimeric RNA, RNA splicing, biology.protein, splice, Gene, Polymerase, DNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::c7c02dc98fd8635a1f08ba5c018151f2
https://doi.org/10.1158/1538-7445.am2017-565

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14

Abstract 5354: Evaluation of quantity, quality and performance with the TruSight® Tumor 170 solid tumor profiling assay of nucleic acids extracted from formalin-fixed paraffin-embedded (FFPE) tissue sections

المصدر: Cancer Research. 77:5354-5354

مصطلحات موضوعية: Cancer Research, Pathology, medicine.medical_specialty, Formalin fixed paraffin embedded, Significant difference, Biology, Molecular biology, Sample quality, Real-time polymerase chain reaction, Tissue sections, Oncology, Nucleic acid, medicine, RNA extraction, Solid tumor

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::21a5b3d40c247a4b2f920a01d82e5dd9
https://doi.org/10.1158/1538-7445.am2017-5354

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15

Abstract 3607: An evaluation of NGS to identify gene fusions using RNA from FFPE solid tumor samples

المؤلفون: Tingting Du, Michael R. Rossi, Charles H. Lin, Taofee K. Owonikoko, Zhao Chen, Jennifer S. LoCoco, Gabriel Sica, Scott Newman, Brian Crain, Han-Yu Chuang, Snedecor June, Julianna Tdr Parks, Kathryn M. Stephens, Stewart G. Neill, Luo Byron, Debra Saxe, Matthew Friedenberg

المصدر: Cancer Research. 76:3607-3607

مصطلحات موضوعية: Genetics, Cancer Research, Breakpoint, RNA, Biology, medicine.disease_cause, chemistry.chemical_compound, Oncology, Fusion transcript, chemistry, medicine, Nucleic acid, Indel, Carcinogenesis, Gene, DNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::dec6aa2c6a96aff078d300ab8c2b299b
https://doi.org/10.1158/1538-7445.am2016-3607

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