المؤلفون: Neha Singh, Varune R. Ramnarine, Jin H. Song, Ritu Pandey, Sathish K. R. Padi, Mannan Nouri, Virginie Olive, Maxim Kobelev, Koichi Okumura, David McCarthy, Michelle M. Hanna, Piali Mukherjee, Belinda Sun, Benjamin R. Lee, J. Brandon Parker, Debabrata Chakravarti, Noel A. Warfel, Muhan Zhou, Jeremiah J. Bearss, Ewan A. Gibb, Mohammed Alshalalfa, R. Jefferey Karnes, Eric J. Small, Rahul Aggarwal, Felix Feng, Yuzhuo Wang, Ralph Buttyan, Amina Zoubeidi, Mark Rubin, Martin Gleave, Frank J. Slack, Elai Davicioni, Himisha Beltran, Colin Collins, Andrew S. Kraft

المصدر: Nature Communications, Vol 12, Iss 1, Pp 1-20 (2021)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/fe3ffb322dcb47a8b750da286a3e5ab2

المؤلفون: Mthabisi B. Moyo, J. Brandon Parker, Debabrata Chakravarti

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-16 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/a01835de97ba44deb1d5266b194a1767

المؤلفون: Jacob R. Leistico, Priyanka Saini, Christopher R. Futtner, Miroslav Hejna, Yasuhiro Omura, Pritin N. Soni, Poorva Sandlesh, Magdy Milad, Jian-Jun Wei, Serdar Bulun, J. Brandon Parker, Grant D. Barish, Jun S. Song, Debabrata Chakravarti

المصدر: Cell Reports, Vol 34, Iss 13, Pp 108927- (2021)

مصطلحات موضوعية: epigenomics, tensor decomposition, support tensor machine, leiomyoma, cancer, HOXA13, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124721002412; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/73c125c132d24f03b4bd50fc70459b3a

المؤلفون: J. Brandon Parker, Hanwei Yin, Aurimas Vinckevicius, Debabrata Chakravarti

المصدر: Cell Reports, Vol 9, Iss 3, Pp 967-982 (2014)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124714008341; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/070110dd001748ab9373a1cf238f81c6

المؤلفون: Austin G. Holmes, J. Brandon Parker, Vinay Sagar, Mihai I. Truica, Pritin N. Soni, Huiying Han, Gary E. Schiltz, Sarki A. Abdulkadir, Debabrata Chakravarti

المصدر: Science advances. 8(17)

مصطلحات موضوعية: Epigenomics, Male, Proto-Oncogene Proteins c-myc, Multidisciplinary, Gene Expression, Humans, Breast Neoplasms, Chromatin

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::327ec8c8ad352ce2afd233e8dd6f453e
https://pubmed.ncbi.nlm.nih.gov/35476451

المؤلفون: Oliwia W Mlodawska, Priyanka Saini, J Brandon Parker, Jian-Jun Wei, Serdar E Bulun, Melissa A Simon, Debabrata Chakravarti

المصدر: Hum Reprod Update

مصطلحات موضوعية: Epigenomics, Histones, Reproductive Medicine, Leiomyoma, Uterine Neoplasms, Obstetrics and Gynecology, Humans, Reviews, Female, Middle Aged, Chromatin

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::229b1be68a5d836a56fc78c76c5b1695
https://pubmed.ncbi.nlm.nih.gov/35199155

المؤلفون: Phillip Phuc Le, Joshua R Friedman, Jonathan Schug, John E Brestelli, J Brandon Parker, Irina M Bochkis, Klaus H Kaestner

المصدر: PLoS Genetics, Vol 1, Iss 2, p e16 (2005)

مصطلحات موضوعية: Genetics, QH426-470

Relation: http://europepmc.org/articles/PMC1186734?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404; https://doaj.org/article/21aa912e1ebf45218edbcc0f642c6534

الاتاحة: https://doi.org/10.1371/journal.pgen.0010016
https://doaj.org/article/21aa912e1ebf45218edbcc0f642c6534

المؤلفون: Michael Mcmillian, Alex Y Nie, J Brandon Parker, Angelique Leone, Stewart Bryant, Michael Kemmerer, Judy Herlich, Yanhong Liu, Lynn Yieh, Anton Bittner, Xuejun Liu, Jackson Wan, Mark D Johnson

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.mimicell.com/toxicogenomics/publications/Oxidative%20Stress.pdf.

وصف الملف: application/pdf

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1055.4686; http://www.mimicell.com/toxicogenomics/publications/Oxidative%20Stress.pdf

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1055.4686
http://www.mimicell.com/toxicogenomics/publications/Oxidative%20Stress.pdf

المؤلفون: Debabrata Chakravarti, Horacio Cardenas, Jessica Thomes Pepin, Guanglong Jiang, Harikrishna Nakshatri, J. Brandon Parker, Daniela Matei, Yunlong Liu, Salvatore Condello, Kenneth P. Nephew

المصدر: NPJ Precision Oncology
npj Precision Oncology, Vol 3, Iss 1, Pp 1-14 (2019)

مصطلحات موضوعية: 0301 basic medicine, Cancer Research, Gene knockdown, endocrine system diseases, Epigenome, Biology, lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens, lcsh:RC254-282, Article, 3. Good health, Chromatin, 03 medical and health sciences, Histone H3, 030104 developmental biology, 0302 clinical medicine, Oncology, Ovarian cancer, 030220 oncology & carcinogenesis, Gene expression, Cancer research, CXCL10, Epigenetics, Histone deacetylase, skin and connective tissue diseases

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ddfa68efa28510733ba8f80e0d8cda45
https://doi.org/10.1038/s41698-019-0103-4

المؤلفون: J. Brandon Parker, Mthabisi B. Moyo, Debabrata Chakravarti

المصدر: Nature Communications
Nature Communications, Vol 11, Iss 1, Pp 1-16 (2020)

مصطلحات موضوعية: 0301 basic medicine, Epigenomics, Transcription, Genetic, Reproductive disorders, General Physics and Astronomy, Epigenesis, Genetic, 0302 clinical medicine, Histone post-translational modifications, RNA-Seq, lcsh:Science, Cells, Cultured, Regulation of gene expression, Multidisciplinary, Uterine leiomyoma, Mediator Complex, Leiomyoma, Myometrium, Exons, Middle Aged, musculoskeletal system, female genital diseases and pregnancy complications, Chromatin, Cell biology, Gene Expression Regulation, Neoplastic, surgical procedures, operative, Enhancer Elements, Genetic, 030220 oncology & carcinogenesis, Uterine Neoplasms, Chromatin Immunoprecipitation Sequencing, Female, Adult, Science, Primary Cell Culture, Biology, Hysterectomy, Chromatin structure, General Biochemistry, Genetics and Molecular Biology, Article, 03 medical and health sciences, Gene silencing, Humans, Genetic Predisposition to Disease, Epigenetics, Enhancer, neoplasms, Transcription factor, General Chemistry, Cyclin-Dependent Kinase 8, Gene regulation, body regions, Transcription Factor AP-1, 030104 developmental biology, Amino Acid Substitution, Mutation, lcsh:Q

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::587ee79f676d7f8b6001f7f3a867df58
https://pubmed.ncbi.nlm.nih.gov/32094355

المؤلفون: Yasuhiro Omura, Jun S. Song, Pritin N. Soni, Jian-Jun Wei, Debabrata Chakravarti, Miroslav Hejna, Poorva Sandlesh, Jacob R. Leistico, Christopher R. Futtner, Grant D. Barish, Magdy P. Milad, J. Brandon Parker, Serdar E. Bulun, Priyanka Saini

المصدر: Cell reports
Cell Reports, Vol 34, Iss 13, Pp 108927-(2021)

مصطلحات موضوعية: 0301 basic medicine, support tensor machine, Computational biology, Disease, General Biochemistry, Genetics and Molecular Biology, Article, Epigenesis, Genetic, 03 medical and health sciences, Epigenome, 0302 clinical medicine, tensor decomposition, Cellular development, Tensor decomposition, cancer, Cluster Analysis, Humans, Nucleotide Motifs, lcsh:QH301-705.5, Epigenomics, biology, Leiomyoma, Genes, Homeobox, Cell Differentiation, Patient data, HOXA13, Chromatin, Extracellular Matrix, Gene Expression Regulation, Neoplastic, 030104 developmental biology, Histone, Enhancer Elements, Genetic, HEK293 Cells, lcsh:Biology (General), epigenomics, Uterine Neoplasms, biology.protein, Myometrium, Female, 030217 neurology & neurosurgery, Transcription Factors

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::230374303530c74511257d9251d6bb72
http://europepmc.org/articles/PMC8111960

المؤلفون: Yi Luan, Young Yoo, Rama K. Mishra, Debabrata Chakravarti, Irawati Kandela, Gary E. Schiltz, Barbara Lysy, Huiying Han, Jonathan F. Anker, Zachary R. Chalmers, Sarki A. Abdulkadir, Javier Izquierdo-Ferrer, Rajita Vatapalli, Hanlin Mok, Atul D. Jain, Mihai I. Truica, Yara Rodriguez, Vinay Sagar, J. Brandon Parker, Kenji Unno

المصدر: Cancer Cell

مصطلحات موضوعية: Male, Threonine, 0301 basic medicine, Proteasome Endopeptidase Complex, Cancer Research, medicine.medical_treatment, B7-H1 Antigen, Article, Proto-Oncogene Proteins c-myc, Mice, 03 medical and health sciences, Antineoplastic Agents, Immunological, 0302 clinical medicine, Therapeutic index, Downregulation and upregulation, Cell Line, Tumor, Neoplasms, PD-L1, Antineoplastic Combined Chemotherapy Protocols, Drug Discovery, Gene expression, Tumor Microenvironment, medicine, Animals, Humans, Tumor growth, Phosphorylation, biology, Chemistry, Drug Synergism, Cell Biology, Immunotherapy, Xenograft Model Antitumor Assays, Small molecule, Up-Regulation, 030104 developmental biology, Oncology, Drug Resistance, Neoplasm, 030220 oncology & carcinogenesis, Proteolysis, Cancer research, biology.protein, Feasibility Studies, Female

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44fe2da77985b3329c0db7f73072515d
https://doi.org/10.1016/j.ccell.2019.10.001

المؤلفون: J. Wu, Debabrata Chakravarti, Erica E. Marsh, Marissa L. Steinberg, J. Brandon Parker, Serdar E. Bulun

مصطلحات موضوعية: 0301 basic medicine, medicine.medical_specialty, Uterine fibroids, Fibrillar Collagens, Primary Cell Culture, Down-Regulation, Transfection, Article, Extracellular matrix, 03 medical and health sciences, Collagen Type III, 0302 clinical medicine, Internal medicine, microRNA, Medicine, Humans, neoplasms, Uterine Neoplasm, Cells, Cultured, 030219 obstetrics & reproductive medicine, Leiomyoma, business.industry, Myometrium, Obstetrics and Gynecology, musculoskeletal system, medicine.disease, female genital diseases and pregnancy complications, Up-Regulation, Gene Expression Regulation, Neoplastic, MicroRNAs, 030104 developmental biology, Endocrinology, Reproductive Medicine, Gene Knockdown Techniques, Uterine Neoplasms, Cancer research, Female, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::39d8cd6366036b603b50b93706b158a0
https://europepmc.org/articles/PMC5011009/

المؤلفون: Jian-Jun Wei, Debabrata Chakravarti, Hanwei Yin, Santanu Palchaudhuri, J. Brandon Parker

المصدر: Molecular and Cellular Biology. 32:1654-1670

مصطلحات موضوعية: Regulation of gene expression, Zinc finger, Host cell factor C1, Gene knockdown, Transcription, Genetic, Promoter, Articles, Cell Biology, Biology, Molecular biology, Cell Line, Chromatin, Cell biology, Gene Expression Regulation, Neoplastic, Histones, Repressor Proteins, Colonic Neoplasms, Gene expression, Transcriptional regulation, Humans, Host Cell Factor C1, Molecular Biology, Cell Proliferation, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f46f4dd4b2396860bb8317666ab3294
https://doi.org/10.1128/mcb.06033-11

المؤلفون: Matthew R. Bozovsky, Rebecca J. Loomis, J. Brandon Parker, Todd S. Macfarlan, Debabrata Chakravarti, James L. Manley, Velibor Savic, Yoshinori Naoe

المصدر: Molecular Cell. 33:450-461

مصطلحات موضوعية: viruses, Aurora B kinase, Mitosis, Biology, environment and public health, Article, Histones, Histone H3, Histone H2A, Serine, Animals, Humans, Histone code, Phosphorylation, Molecular Biology, Cells, Cultured, Binding Sites, Serine-Arginine Splicing Factors, Chromatin binding, Nuclear Proteins, RNA-Binding Proteins, virus diseases, Cell Biology, Molecular biology, Chromatin, Nucleosomes, Cell biology, Histone, biology.protein, Chickens, HeLa Cells

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2eb25311caff3df127580e07f8c30d61
https://doi.org/10.1016/j.molcel.2009.02.003

المؤلفون: Debabrata Chakravarti, Aurimas Vinckevicius, J. Brandon Parker

المصدر: Molecular and cellular biology. 35(24)

مصطلحات موضوعية: Transcription, Genetic, Gene Expression, Transcription coregulator, Computational biology, DNA-binding protein, Cell Line, Transcription (biology), CRISPR, Humans, Clustered Regularly Interspaced Short Palindromic Repeats, Nucleotide Motifs, Promoter Regions, Genetic, Molecular Biology, Transcription factor, Genetics, Binding Sites, biology, Base Sequence, Promoter, Cell Biology, Articles, Chromatin, DNA-Binding Proteins, Repressor Proteins, Histone, HEK293 Cells, Multiprotein Complexes, biology.protein, Trans-Activators, RNA Editing, Host Cell Factor C1, HeLa Cells

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6dec1cef5e7e44cbfafe71b37db50f7d
https://pubmed.ncbi.nlm.nih.gov/26416877

المؤلفون: Alex Nie, Anton Bittner, Michael K. McMillian, Andrew Carmen, Angelique Leone, Jackson S. Wan, J. Brandon Parker, Jay Nelson, Lynn Yieh, Peter Lord, Stewart Bryant

المصدر: Molecular Carcinogenesis. 45:914-933

مصطلحات موضوعية: Genetics, Cancer Research, Metallothionein 1A, Biology, medicine.disease_cause, Gene expression profiling, Gene expression, medicine, DNA microarray, Toxicogenomics, Carcinogenesis, Molecular Biology, PGRMC1, Gene

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a17b7ad9b51fec94f63eb991ce5802ef
https://doi.org/10.1002/mc.20205

المؤلفون: Debabrata Chakravarti, J. Brandon Parker, Todd S. Macfarlan, Kyosuke Nagata

المصدر: Molecular Endocrinology. 20:335-347

مصطلحات موضوعية: Transcription, Genetic, Chromosomal Proteins, Non-Histone, Molecular Sequence Data, Down-Regulation, SAP30, Histones, Endocrinology, Histone H1, Two-Hybrid System Techniques, Protein Interaction Mapping, Histone methylation, Histone H2A, Animals, Humans, Immunoprecipitation, Histone code, Histone Chaperones, Amino Acid Sequence, RNA, Small Interfering, Promoter Regions, Genetic, Molecular Biology, Cells, Cultured, biology, Acetylation, General Medicine, Histone acetyltransferase, HDAC4, Molecular biology, Cell biology, DNA-Binding Proteins, Repressor Proteins, Gene Expression Regulation, Histone methyltransferase, biology.protein, Transcription Factors

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d65071c4e000c7229f74f26ec42cb269
https://doi.org/10.1210/me.2005-0248

المؤلفون: Alex Nie, Xuejun Liu, J. Brandon Parker, Peter Lord, Mark D. Johnson, Anton Bittner, Angelique Leone, Michael Kemmerer, Lynn Yieh, Judy Herlich, Stewart Bryant, Michael K. McMillian, Jackson S. Wan

المصدر: Toxicology and Applied Pharmacology. 207:171-178

مصطلحات موضوعية: Pharmacology, Gene Expression Profiling, Genomics, Oxidative phosphorylation, Gene signature, Biology, Toxicology, medicine.disease_cause, Molecular biology, Rats, Cell biology, Gene expression profiling, Oxidative Stress, Liver, medicine, Animals, DNA microarray, Toxicogenomics, Gene, Transcription factor, Oxidative stress, Oligonucleotide Array Sequence Analysis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26251fef036b8d21bb65b1c86a06d8e9
https://doi.org/10.1016/j.taap.2005.02.031

المؤلفون: Anton Bittner, Jackson S. Wan, Xuejun Liu, J. Brandon Parker, Alex Nie, Mark D. Johnson, Angelique Leone, Lynn Yieh, Stewart Bryant, Michael Kemmerer, Yanhong Liu, Michael K. McMillian, Judy Herlich

المصدر: Biochemical Pharmacology. 68:2249-2261

مصطلحات موضوعية: NF-E2-Related Factor 2, Metabolite, Biology, medicine.disease_cause, Biochemistry, Rats, Sprague-Dawley, chemistry.chemical_compound, Gene expression, medicine, Animals, Epoxide hydrolase, Oligonucleotide Array Sequence Analysis, Pharmacology, Activator (genetics), Gene Expression Profiling, Rats, DNA-Binding Proteins, Gene expression profiling, Oxidative Stress, Liver, chemistry, Macrophage-Activating Factors, Trans-Activators, Gene chip analysis, Peroxisome Proliferators, DNA microarray, Oxidative stress

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::27bcb5d7fd13bd04f8dbcec385b9018b
https://doi.org/10.1016/j.bcp.2004.08.003