المؤلفون: Aimin Yan, Cristina Baricordi, Quoc Nguyen, Luigi Barbarossa, Mariana Loperfido, Luca Biasco

المصدر: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-31 (2023)

مصطلحات موضوعية: Integration site analysis, IS-Seq, Abundance estimation, Read-based, UMI-based, Fragment-length based, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/d7e664d64c5543e5bfcd857847f6fcce

المؤلفون: Patro, Sean C, Brandt, Leah D, Bale, Michael J, Halvas, Elias K, Joseph, Kevin W, Shao, Wei, Wu, Xiaolin, Guo, Shuang, Murrell, Ben, Wiegand, Ann, Spindler, Jonathan, Raley, Castle, Hautman, Christopher, Sobolewski, Michele, Fennessey, Christine M, Hu, Wei-Shau, Luke, Brian, Hasson, Jenna M, Niyongabo, Aurelie, Capoferri, Adam A, Keele, Brandon F, Milush, Jeff, Hoh, Rebecca, Deeks, Steven G, Maldarelli, Frank, Hughes, Stephen H, Coffin, John M, Rausch, Jason W, Mellors, John W, Kearney, Mary F

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 116(51)

مصطلحات موضوعية: Biological Sciences, Biomedical and Clinical Sciences, Genetics, Immunology, Medical Microbiology, Sexually Transmitted Infections, HIV/AIDS, Cancer Genomics, Human Genome, Infectious Diseases, Cancer, 2.2 Factors relating to the physical environment, Infection, Anti-Retroviral Agents, Base Sequence, Cell Line, DNA, Viral, Drug Resistance, Viral, HIV Infections, HIV-1, Humans, Leukocytes, Mononuclear, Lymph Nodes, Mutation, Proviruses, Virus Integration, Virus Replication, HIV persistence, proviral structure, integration site analysis

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4zk5v6hv
https://escholarship.org/content/qt4zk5v6hv/qt4zk5v6hv.pdf

المؤلفون: Michelle Y-H Lee, Georges Khoury, Moshe Olshansky, Secondo Sonza, Glen P. Carter, James McMahon, Timothy P. Stinear, Stephen J. Turner, Sharon R. Lewin, Damian F. J. Purcell

مصطلحات موضوعية: Clinical Microbiology, Medical Bacteriology, Medical Infection Agents (incl. Prions), Medical Virology, HIV latency, readthrough transcription, chimeric mRNAs, Tat trans-activator, proviral DNA integration, integration site analysis

Relation: https://figshare.com/articles/presentation/Presentation_1_Detection_of_Chimeric_Cellular_HIV_mRNAs_Generated_Through_Aberrant_Splicing_in_HIV-1_Latently_Infected_Resting_CD4_T_Cells_pptx/19671270

الاتاحة: https://doi.org/10.3389/fcimb.2022.855290.s014
https://figshare.com/articles/presentation/Presentation_1_Detection_of_Chimeric_Cellular_HIV_mRNAs_Generated_Through_Aberrant_Splicing_in_HIV-1_Latently_Infected_Resting_CD4_T_Cells_pptx/19671270

المؤلفون: Maria Artesi, Vincent Hahaut, Basiel Cole, Laurens Lambrechts, Fereshteh Ashrafi, Ambroise Marçais, Olivier Hermine, Philip Griebel, Natasa Arsic, Frank van der Meer, Arsène Burny, Dominique Bron, Elettra Bianchi, Philippe Delvenne, Vincent Bours, Carole Charlier, Michel Georges, Linos Vandekerckhove, Anne Van den Broeke, Keith Durkin

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)

مصطلحات موضوعية: Viral genome, Integration site analysis, Clonal expansion, NGS, Long-read sequencing, Retrovirus, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/87d64560673f4a9ca90efdd587b91997

المؤلفون: Chin, Chee Jia, Cooper, Aaron R, Lill, Georgia R, Evseenko, Denis, Zhu, Yuhua, Bin He, Chong, Casero, David, Pellegrini, Matteo, Kohn, Donald B, Crooks, Gay M

المصدر: Stem Cells. 34(5)

مصطلحات موضوعية: Medical Biotechnology, Biomedical and Clinical Sciences, Genetics, Regenerative Medicine, Stem Cell Research - Nonembryonic - Non-Human, Stem Cell Research - Induced Pluripotent Stem Cell, Stem Cell Research - Embryonic - Human, Stem Cell Research, Stem Cell Research - Nonembryonic - Human, Stem Cell Research - Induced Pluripotent Stem Cell - Human, 1.1 Normal biological development and functioning, Animals, Antigens, CD, Cell Differentiation, Cell Line, Cell Lineage, Cell Separation, Clone Cells, Flow Cytometry, Genetic Techniques, Humans, Lentivirus, Mesoderm, Mice, Multipotent Stem Cells, Pluripotent stem cells, Vector integration site analysis, Lineage tracing, Clonal tracking, Lentiviral vectors, Hematopoiesis, Biological Sciences, Technology, Medical and Health Sciences, Immunology, Biological sciences, Biomedical and clinical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8s5434wj
https://escholarship.org/content/qt8s5434wj/qt8s5434wj.pdf

المؤلفون: Michelle Y-H Lee, Georges Khoury, Moshe Olshansky, Secondo Sonza, Glen P. Carter, James McMahon, Timothy P. Stinear, Stephen J. Turner, Sharon R. Lewin, Damian F. J. Purcell

المصدر: Frontiers in Cellular and Infection Microbiology, Vol 12 (2022)

مصطلحات موضوعية: HIV latency, readthrough transcription, chimeric mRNAs, Tat trans-activator, proviral DNA integration, integration site analysis, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.855290/full; https://doaj.org/toc/2235-2988

URL الوصول: https://doaj.org/article/c2f040ad12cf4dec9245f544d8ddf3bf

المؤلفون: Artesi, Maria, Hahaut, Vincent, Cole, Basiel, Lambrechts, Laurens, Ashrafi, Fereshteh, Marçais, Ambroise, Hermine, Olivier, Griebel, Philip, Arsic, Natasa, van der Meer, Frank, Burny, Arsène, Bron, Dominique, Bianchi, Elettra, Delvenne, Philippe O, Bours, Vincent, Charlier, Carole, Georges, Michel, Vandekerckhove, Linos, Van Den Broeke, Anne, Durkin, Keith

المصدر: Genome biology, 22 (1

مصطلحات موضوعية: Hématologie, BLV, Clonal expansion, HIV, HPV, HTLV-1, Integration site analysis, Long-read sequencing, NGS, Retrovirus, Viral genome

وصف الملف: 1 full-text file(s): application/pdf

Relation: uri/info:doi/10.1186/s13059-021-02307-0; uri/info:pmid/33823910; uri/info:scp/85103995015; https://dipot.ulb.ac.be/dspace/bitstream/2013/322465/1/doi_306109.pdf; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/322465

الاتاحة: http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/322465
https://dipot.ulb.ac.be/dspace/bitstream/2013/322465/1/doi_306109.pdf

المؤلفون: Maria Artesi (3492008), Vincent Hahaut (3492017), Basiel Cole (10532204), Laurens Lambrechts (10532207), Fereshteh Ashrafi (10532210), Ambroise Marçais (8608566), Olivier Hermine (69824), Philip Griebel (2834516), Natasa Arsic (3492011), Frank van der Meer (216287), Arsène Burny (77340), Dominique Bron (58110), Elettra Bianchi (790862), Philippe Delvenne (91764), Vincent Bours (96245), Carole Charlier (139517), Michel Georges (69807), Linos Vandekerckhove (105574), Anne Van den Broeke (10532213), Keith Durkin (3492020)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Plant Biology, Virology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Viral genome, Integration site analysis, Clonal expansion, NGS, Long-read sequencing, Retrovirus, HTLV-1, BLV, HIV, HPV

Relation: https://figshare.com/articles/journal_contribution/Additional_file_5_of_PCIP-seq_simultaneous_sequencing_of_integrated_viral_genomes_and_their_insertion_sites_with_long_reads/14379392

الاتاحة: https://doi.org/10.6084/m9.figshare.14379392.v1

المؤلفون: Maria Artesi (3492008), Vincent Hahaut (3492017), Basiel Cole (10532204), Laurens Lambrechts (10532207), Fereshteh Ashrafi (10532210), Ambroise Marçais (8608566), Olivier Hermine (69824), Philip Griebel (2834516), Natasa Arsic (3492011), Frank van der Meer (216287), Arsène Burny (77340), Dominique Bron (58110), Elettra Bianchi (790862), Philippe Delvenne (91764), Vincent Bours (96245), Carole Charlier (139517), Michel Georges (69807), Linos Vandekerckhove (105574), Anne Van den Broeke (10532213), Keith Durkin (3492020)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Plant Biology, Virology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Viral genome, Integration site analysis, Clonal expansion, NGS, Long-read sequencing, Retrovirus, HTLV-1, BLV, HIV, HPV

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_PCIP-seq_simultaneous_sequencing_of_integrated_viral_genomes_and_their_insertion_sites_with_long_reads/14379380

الاتاحة: https://doi.org/10.6084/m9.figshare.14379380.v1

المؤلفون: Maria Artesi (3492008), Vincent Hahaut (3492017), Basiel Cole (10532204), Laurens Lambrechts (10532207), Fereshteh Ashrafi (10532210), Ambroise Marçais (8608566), Olivier Hermine (69824), Philip Griebel (2834516), Natasa Arsic (3492011), Frank van der Meer (216287), Arsène Burny (77340), Dominique Bron (58110), Elettra Bianchi (790862), Philippe Delvenne (91764), Vincent Bours (96245), Carole Charlier (139517), Michel Georges (69807), Linos Vandekerckhove (105574), Anne Van den Broeke (10532213), Keith Durkin (3492020)

مصطلحات موضوعية: Medicine, Microbiology, Genetics, Biotechnology, Evolutionary Biology, Cancer, Infectious Diseases, Plant Biology, Virology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Viral genome, Integration site analysis, Clonal expansion, NGS, Long-read sequencing, Retrovirus, HTLV-1, BLV, HIV, HPV

Relation: https://figshare.com/articles/journal_contribution/Additional_file_3_of_PCIP-seq_simultaneous_sequencing_of_integrated_viral_genomes_and_their_insertion_sites_with_long_reads/14379386

الاتاحة: https://doi.org/10.6084/m9.figshare.14379386.v1

المؤلفون: Valentina Poletti, Fulvio Mavilio

المصدر: Molecular Therapy: Methods & Clinical Development, Vol 8, Iss C, Pp 31-41 (2018)

مصطلحات موضوعية: retroviruses, HIV, Moloney leukemia virus, integration, histone modification, transcriptional regulation, viral tethering, integration site analysis, viral vectors, gene therapy, Genetics, QH426-470, Cytology, QH573-671

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2329050117301080; https://doaj.org/toc/2329-0501

URL الوصول: https://doaj.org/article/bda92402dedf4691adc4a5dc7cbd4f09

المؤلفون: Giulio Spinozzi, Andrea Calabria, Stefano Brasca, Stefano Beretta, Ivan Merelli, Luciano Milanesi, Eugenio Montini

المصدر: BMC Bioinformatics, Vol 18, Iss 1, Pp 1-12 (2017)

مصطلحات موضوعية: Open source software, Bioinformatics pipeline, Integration site analysis, Gene therapy, High-throughput sequencing, Next-generation sequencing, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-017-1937-9; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/09c3c83637b24ceaa6e89a6a947c9101

المؤلفون: Atul Kamboj, Claus V. Hallwirth, Ian E. Alexander, Geoffrey B. McCowage, Belinda Kramer

المصدر: BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)

مصطلحات موضوعية: Gene therapy, Integration site analysis, Next-generation sequencing, Viral vectors, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-017-1719-4; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/2285089811e149aca0593b237fd7fe22

المؤلفون: Niyongabo, Aurelie

مصطلحات موضوعية: Human Immunodeficiency Virus Type-1 HIV-1, Proviral Structures, Whole Genome Sequencing, Integration Site Analysis

الاتاحة: https://dx.doi.org/10.13016/m2wgki-anw3
http://mdsoar.org/handle/11603/18233

المؤلفون: Elettra Bianchi, Fereshteh Ashrafi, Basiel Cole, Arsène Burny, Michel Georges, Maria Artesi, Olivier Hermine, Natasa Arsic, Keith Durkin, Philip J. Griebel, Vincent Bours, Frank van der Meer, Carole Charlier, Ambroise Marçais, Linos Vandekerckhove, Vincent Hahaut, Laurens Lambrechts, Anne Van den Broeke, Dominique Bron, Philippe Delvenne

المساهمون: CHU Necker - Enfants Malades [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Université de Paris (UP)

المصدر: Genome Biology
Genome Biology, BioMed Central, 2021, 22 (1), ⟨10.1186/s13059-021-02307-0⟩
Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)
Genome biology, 22 (1
GENOME BIOLOGY

مصطلحات موضوعية: Host genome, HPV, lcsh:QH426-470, Virus Integration, viruses, [SDV]Life Sciences [q-bio], BLV, Endogenous retrovirus, Method, Computational biology, Genome, Viral, Viral genome, Genome, Polymerase Chain Reaction, Polymorphism, Single Nucleotide, 03 medical and health sciences, 0302 clinical medicine, Retrovirus, Proviruses, Infected cell, Medicine and Health Sciences, Animals, Humans, Clustered Regularly Interspaced Short Palindromic Repeats, Long-read sequencing, lcsh:QH301-705.5, 030304 developmental biology, Sequence (medicine), 0303 health sciences, biology, Computational Biology, High-Throughput Nucleotide Sequencing, HIV, Genomics, biology.organism_classification, Human genetics, Clonal expansion, 3. Good health, lcsh:Genetics, Retroviridae, Integration site analysis, lcsh:Biology (General), Viral genomes, HTLV-1, NGS, 030217 neurology & neurosurgery, Hématologie

وصف الملف: 1 full-text file(s): application/pdf; application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97082bad6c83e7ab8bd28ffbbb0eff12
https://hal-univ-paris.archives-ouvertes.fr/hal-03244131

المؤلفون: Michelle Y-H Lee, Georges Khoury, Moshe Olshansky, Secondo Sonza, Glen P. Carter, James McMahon, Timothy P. Stinear, Stephen J. Turner, Sharon R. Lewin, Damian F. J. Purcell

مصطلحات موضوعية: Clinical Microbiology, Medical Bacteriology, Medical Infection Agents (incl. Prions), Medical Virology, HIV latency, readthrough transcription, chimeric mRNAs, Tat trans-activator, proviral DNA integration, integration site analysis

Relation: https://figshare.com/articles/figure/Image_1_Detection_of_Chimeric_Cellular_HIV_mRNAs_Generated_Through_Aberrant_Splicing_in_HIV-1_Latently_Infected_Resting_CD4_T_Cells_tif/19671228

الاتاحة: https://doi.org/10.3389/fcimb.2022.855290.s001
https://figshare.com/articles/figure/Image_1_Detection_of_Chimeric_Cellular_HIV_mRNAs_Generated_Through_Aberrant_Splicing_in_HIV-1_Latently_Infected_Resting_CD4_T_Cells_tif/19671228

المؤلفون: Michelle Y-H Lee, Georges Khoury, Moshe Olshansky, Secondo Sonza, Glen P. Carter, James McMahon, Timothy P. Stinear, Stephen J. Turner, Sharon R. Lewin, Damian F. J. Purcell

مصطلحات موضوعية: Clinical Microbiology, Medical Bacteriology, Medical Infection Agents (incl. Prions), Medical Virology, HIV latency, readthrough transcription, chimeric mRNAs, Tat trans-activator, proviral DNA integration, integration site analysis

Relation: https://figshare.com/articles/dataset/Table_1_Detection_of_Chimeric_Cellular_HIV_mRNAs_Generated_Through_Aberrant_Splicing_in_HIV-1_Latently_Infected_Resting_CD4_T_Cells_xlsx/19671273

الاتاحة: https://doi.org/10.3389/fcimb.2022.855290.s015
https://figshare.com/articles/dataset/Table_1_Detection_of_Chimeric_Cellular_HIV_mRNAs_Generated_Through_Aberrant_Splicing_in_HIV-1_Latently_Infected_Resting_CD4_T_Cells_xlsx/19671273

المؤلفون: John M. Coffin, Rebecca Hoh, Jason W. Rausch, Brandon F. Keele, Frank Maldarelli, Sean C Patro, Christine M. Fennessey, Shuang Guo, Christopher Hautman, Leah D. Brandt, Brian T. Luke, Elias K. Halvas, Steven G. Deeks, Kevin W. Joseph, Wei Shao, Michael J. Bale, Adam A. Capoferri, Aurelie Niyongabo, Michele D. Sobolewski, Jonathan Spindler, Xiaolin Wu, Jeffrey M. Milush, Stephen H. Hughes, Ben Murrell, John W. Mellors, Castle Raley, Mary F. Kearney, Jenna M Hasson, Wei-Shau Hu, Ann Wiegand

المصدر: Proceedings of the National Academy of Sciences of the United States of America, vol 116, iss 51
Proc Natl Acad Sci U S A

مصطلحات موضوعية: 0301 basic medicine, Virus Integration, Art initiation, Mononuclear, 030106 microbiology, Drug Resistance, Human immunodeficiency virus (HIV), HIV persistence, HIV Infections, Biology, Virus Replication, medicine.disease_cause, Peripheral blood mononuclear cell, Virus, Cell Line, 03 medical and health sciences, Proviruses, Drug Resistance, Viral, Leukocytes, Genetics, medicine, Humans, 2.2 Factors relating to the physical environment, Viral, Aetiology, integration site analysis, Sequence (medicine), Subgenomic mRNA, proviral structure, Multidisciplinary, Base Sequence, DNA, Biological Sciences, Provirus, Virology, Infectious Diseases, 030104 developmental biology, Anti-Retroviral Agents, Viral dynamics, DNA, Viral, Mutation, Leukocytes, Mononuclear, HIV-1, HIV/AIDS, Lymph Nodes, Infection

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::803cc0ea7fa4b594a4c4f8f38a92d797
https://doi.org/10.1073/pnas.1910334116

المؤلفون: Joshua C. Cyktor, Wei Shao, Ann Wiegand, Elias K. Halvas, Daria Wells, John M. Coffin, Xiaolin Wu, Gert U. van Zyl, Jonathan Spindler, Mary Grace Katusiime, Mark F. Cotton, John W. Mellors, Stephen H. Hughes, Michael J. Bale, Mary F. Kearney

المصدر: mBio
mBio, Vol 12, Iss 2 (2021)

مصطلحات موضوعية: CD4-Positive T-Lymphocytes, Cell division, T cell, perinatal infection, Cell, HIV Infections, Viremia, clonal expansion, Biology, Virus Replication, Microbiology, Genome, Peripheral blood mononuclear cell, 03 medical and health sciences, 0302 clinical medicine, Immune system, Proviruses, Virology, medicine, Humans, 030212 general & internal medicine, integration site analysis, 030304 developmental biology, 0303 health sciences, virus diseases, HIV infection, medicine.disease, QR1-502, Virus Latency, medicine.anatomical_structure, HIV-1, Ex vivo, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b2cca1493c68978a546162d3df3d69b
https://doi.org/10.1128/mbio.00568-21

المؤلفون: Shinya Kimura, Shuzo Matsushita, Charles R. M. Bangham, Toshikazu Miyakawa, Hiroo Katsuya, Graham P. Taylor, Saiful Islam, Jocelyn Turpin, Hirotomo Nakata, Lucy Cook, Yorifumi Satou, Paola Miyazato, Anat Melamed, Aileen G. Rowan, Benjy Jek Yang Tan, Jumpei Ito, Misaki Matsuo

المساهمون: Wellcome Trust

مصطلحات موضوعية: 0301 basic medicine, viruses, Human immunodeficiency virus (HIV), HIV Infections, Disease, medicine.disease_cause, Myelopathy, 0302 clinical medicine, Intergenic region, Proviruses, LYMPHOMA, Immunology and Allergy, 11 Medical and Health Sciences, Human T-lymphotropic virus 1, High-throughput sequencing, PROLIFERATION, High-Throughput Nucleotide Sequencing, virus diseases, Paraparesis, Tropical Spastic, Infectious Diseases, 030220 oncology & carcinogenesis, Coinfection, Life Sciences & Biomedicine, INTEGRATION, VIRUS TYPE-I, Immunology, PROVIRAL LOAD, Biology, Real-Time Polymerase Chain Reaction, Microbiology, Virus, DNA sequencing, 03 medical and health sciences, Acquired immunodeficiency syndrome (AIDS), 1-ASSOCIATED MYELOPATHY, medicine, Humans, PROGNOSTIC INDEX, Science & Technology, RECEPTOR, HIV, 06 Biological Sciences, medicine.disease, HTLV-I Infections, Virology, coinfection, CD4 Lymphocyte Count, 030104 developmental biology, Integration site analysis, HTLV-1, HIV-1, T-CELLS

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be51f64213ce4e2d60e35b8384bf9945
http://hdl.handle.net/10044/1/88183