المؤلفون: Qinghui Zhou, Mazyar Ghezelji, Ananth Hari, Michael K. B. Ford, Connor Holley, S. Cenk Sahinalp, Ibrahim Numanagić

المصدر: Frontiers in Immunology, Vol 15 (2024)

مصطلحات موضوعية: KIR, bioinformatics, software, genotyping, computational biology, combinatorial optimization, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1494995/full; https://doaj.org/toc/1664-3224

URL الوصول: https://doaj.org/article/a519191e16fb4395a91787f89f265941

المؤلفون: Haris Smajlović, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagić

المصدر: Genome Biology, Vol 24, Iss 1, Pp 1-18 (2023)

مصطلحات موضوعية: Genomic privacy, Secure multiparty computation, Domain-specific language, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/9d674d852f104109871e3c057bd1f0f8

المؤلفون: Tyler Shugg, Reynold C. Ly, Wilberforce Osei, Elizabeth J. Rowe, Caitlin A. Granfield, Ty C. Lynnes, Elizabeth B. Medeiros, Jennelle C. Hodge, Amy M. Breman, Bryan P. Schneider, S. Cenk Sahinalp, Ibrahim Numanagić, Benjamin A. Salisbury, Steven M. Bray, Ryan Ratcliff, Todd C. Skaar

المصدر: Frontiers in Oncology, Vol 13 (2023)

مصطلحات موضوعية: pharmacogenetic algorithm, next-generating sequencing, whole genome sequencing (WGS), whole exome sequencing (WES), pharmacogenomics (PGx), pharmacogenetics (PGx), Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2023.1199741/full; https://doaj.org/toc/2234-943X

URL الوصول: https://doaj.org/article/0e19f26f16c14c318fbd190942dc1299

المؤلفون: Hamza Išerić, Can Alkan, Faraz Hach, Ibrahim Numanagić

المصدر: Algorithms for Molecular Biology, Vol 17, Iss 1, Pp 1-15 (2022)

مصطلحات موضوعية: Genome analysis, Fast alignment, Segmental duplications, Sequence decomposition, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1748-7188

URL الوصول: https://doaj.org/article/2adda1abd3424aeb81051ed13f1c6e60

المؤلفون: Emily Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Manolis Kellis, Ibrahim Numanagić, Bonnie Berger

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/c970eb7c1f7e4e68975f9e9fac639d5d

المؤلفون: Antonio A. Ginart, Joseph Hui, Kaiyuan Zhu, Ibrahim Numanagić, Thomas A. Courtade, S. Cenk Sahinalp, David N. Tse

المصدر: Nature Communications, Vol 9, Iss 1, Pp 1-9 (2018)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/b186eeb7b1ee4de1983ef5679b01c1db

المؤلفون: Ibrahim Numanagić, Salem Malikić, Michael Ford, Xiang Qin, Lorraine Toji, Milan Radovich, Todd C. Skaar, Victoria M. Pratt, Bonnie Berger, Steve Scherer, S. Cenk Sahinalp

المصدر: Nature Communications, Vol 9, Iss 1, Pp 1-11 (2018)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/13fe87a202d640f58073d217f30b3a93

المؤلفون: Antonio A. Ginart, Joseph Hui, Kaiyuan Zhu, Ibrahim Numanagić, Thomas A. Courtade, S. Cenk Sahinalp, David N. Tse

المصدر: Nature Communications, Vol 9, Iss 1, Pp 1-1 (2018)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/02c80be980c442918e9d85d86f540741

المؤلفون: Sourenm, Ibrahim Numanagić

Relation: https://github.com/0xTCG/vectron/tree/v0.1; https://doi.org/10.5281/zenodo.13347574; https://doi.org/10.5281/zenodo.13347575; oai:zenodo.org:13347575

الاتاحة: https://doi.org/10.5281/zenodo.13347575

المؤلفون: Ananth Hari, Qinghui Zhou, Nina Gonzaludo, John Harting, Stuart A. Scott, Xiang Qin, Steve Scherer, S. Cenk Sahinalp, Ibrahim Numanagić

المصدر: Genome Research. 33:61-70

مصطلحات موضوعية: Genetics, Genetics (clinical)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::acaa2abf91a16340540d118102f71405
https://doi.org/10.1101/gr.277075.122

المؤلفون: Andrea Gaedigk, Erin C. Boone, Steven E. Scherer, Seung-been Lee, Ibrahim Numanagić, Cenk Sahinalp, Joshua D. Smith, Sean McGee, Aparna Radhakrishnan, Xiang Qin, Wendy Y. Wang, Emily G. Farrow, Nina Gonzaludo, Aaron L. Halpern, Deborah A. Nickerson, Neil A. Miller, Victoria M. Pratt, Lisa V. Kalman

المصدر: The Journal of Molecular Diagnostics. 24:337-350

مصطلحات موضوعية: Molecular Medicine, Pathology and Forensic Medicine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::6c297ae96d21d698c0ce01e6a9dfad3f
https://doi.org/10.1016/j.jmoldx.2021.12.011

المؤلفون: Ariya Shajii, Gabriel Ramirez, Haris Smajlović, Jessica Ray, Bonnie Berger, Saman Amarasinghe, Ibrahim Numanagić

المصدر: Proceedings of the 32nd ACM SIGPLAN International Conference on Compiler Construction.

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::10a6d407e4ba995948a5e38d5c5eb463
https://doi.org/10.1145/3578360.3580275

المؤلفون: Tyler Shugg, Reynold C. Ly, Wilberforce Osei, Elizabeth J. Rowe, Caitlin A. Granfield, Ty C. Lynnes, Elizabeth B. Medeiros, Jennelle C. Hodge, Amy M. Breman, Bryan P. Schneider, S. Cenk Sahinalp, Ibrahim Numanagić, Benjamin A. Salisbury, Steven M. Bray, Ryan Ratcliff, Todd C. Skaar

مصطلحات موضوعية: Cancer, Cancer Cell Biology, Cancer Diagnosis, Cancer Genetics, Cancer Therapy (excl. Chemotherapy and Radiation Therapy), Chemotherapy, Haematological Tumours, Molecular Targets, Radiation Therapy, Solid Tumours, Oncology and Carcinogenesis not elsewhere classified, pharmacogenetic algorithm, next-generating sequencing, whole genome sequencing (WGS), whole exome sequencing (WES), pharmacogenomics (PGx), pharmacogenetics (PGx)

Relation: https://figshare.com/articles/dataset/Table_1_Computational_pharmacogenotype_extraction_from_clinical_next-generation_sequencing_docx/23622330

الاتاحة: https://doi.org/10.3389/fonc.2023.1199741.s002
https://figshare.com/articles/dataset/Table_1_Computational_pharmacogenotype_extraction_from_clinical_next-generation_sequencing_docx/23622330

المؤلفون: Tyler Shugg, Reynold C. Ly, Wilberforce Osei, Elizabeth J. Rowe, Caitlin A. Granfield, Ty C. Lynnes, Elizabeth B. Medeiros, Jennelle C. Hodge, Amy M. Breman, Bryan P. Schneider, S. Cenk Sahinalp, Ibrahim Numanagić, Benjamin A. Salisbury, Steven M. Bray, Ryan Ratcliff, Todd C. Skaar

مصطلحات موضوعية: Cancer, Cancer Cell Biology, Cancer Diagnosis, Cancer Genetics, Cancer Therapy (excl. Chemotherapy and Radiation Therapy), Chemotherapy, Haematological Tumours, Molecular Targets, Radiation Therapy, Solid Tumours, Oncology and Carcinogenesis not elsewhere classified, pharmacogenetic algorithm, next-generating sequencing, whole genome sequencing (WGS), whole exome sequencing (WES), pharmacogenomics (PGx), pharmacogenetics (PGx)

Relation: https://figshare.com/articles/dataset/DataSheet_1_Computational_pharmacogenotype_extraction_from_clinical_next-generation_sequencing_xlsx/23622327

الاتاحة: https://doi.org/10.3389/fonc.2023.1199741.s001
https://figshare.com/articles/dataset/DataSheet_1_Computational_pharmacogenotype_extraction_from_clinical_next-generation_sequencing_xlsx/23622327

المؤلفون: Maaike van der Lee, Loes Busscher, Roberta Menafra, Qinglian Zhai, Redmar R. van den Berg, Sarah B Kingan, Nina Gonzaludo, Ting Hon, Ting Han, Leonardo Arbiza, Ibrahim Numanagić, Susan L. Kloet, Jesse J. Swen

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::fffaa862e41f280b047836d869683d82
https://doi.org/10.1101/2022.10.25.513646

المؤلفون: Ananth Hari, Qinghui Zhou, Nina Gonzaludo, John Harting, Stuart A. Scott, S. Cenk Sahinalp, Ibrahim Numanagić

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::bde24872535c43d985365374ffb0b378
https://doi.org/10.1101/2022.08.11.503701

المؤلفون: Reynold C. Ly, Tyler Shugg, Ryan Ratcliff, Wilberforce Osei, Ty C. Lynnes, Victoria M. Pratt, Bryan P. Schneider, Milan Radovich, Steven M. Bray, Benjamin A. Salisbury, Baiju Parikh, S. Cenk Sahinalp, Ibrahim Numanagić, Todd C. Skaar

المصدر: J Mol Diagn

مصطلحات موضوعية: Technical Advance, Cytochrome P-450 CYP2D6, DNA Copy Number Variations, Genotype, Liver-Specific Organic Anion Transporter 1, Pharmacogenetics, Exome Sequencing, Molecular Medicine, Cytochrome P-450 CYP3A, High-Throughput Nucleotide Sequencing, Humans, Pathology and Forensic Medicine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::68d33d88b595ae49bc5be912d2e471fd
https://europepmc.org/articles/PMC9227988/

المؤلفون: Alexander T. Leighton, Ibrahim Numanagić, Bonnie Berger, Saman Amarasinghe, Ariya Shajii, Haley Greenyer

المصدر: Nat Biotechnol

مصطلحات موضوعية: business.industry, Programming language, Computer science, Computational genomics, Biomedical Engineering, Computational Biology, Bioengineering, Genomics, Python (programming language), computer.software_genre, Applied Microbiology and Biotechnology, Article, Software, Molecular Medicine, Programming Languages, business, computer, Biotechnology, computer.programming_language

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::38738cc258e42823a9e10c05ee1c8352
https://doi.org/10.1038/s41587-021-00985-6

المؤلفون: Reynold Ly, Tyler Shugg, Ryan Ratcliff, Wilberforce Osei, Victoria Pratt, Bryan Schneider, Milan Radovich, Steven Bray, Benjamin Salisbury, Baiju Parikh, S. Cenk Sahinalp, Ibrahim Numanagić, Todd Skaar

المصدر: Genetics in Medicine. 24:S234-S235

مصطلحات موضوعية: Genetics (clinical)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a69fde49a35ed06d82f984a00d378b8b
https://doi.org/10.1016/j.gim.2022.01.408

المؤلفون: Ibrahim Numanagić, Riyadh Baghdadi, Saman Amarasinghe, Ariya Shajii, Bonnie Berger

المصدر: Proceedings of the ACM on Programming Languages. 3:1-29

مصطلحات موضوعية: 0301 basic medicine, Domain-specific language, Biological data, Computer science, Computational genomics, 020207 software engineering, Genomics, 02 engineering and technology, Python (programming language), Bioinformatics, Data type, 03 medical and health sciences, 030104 developmental biology, 0202 electrical engineering, electronic engineering, information engineering, Performance improvement, Safety, Risk, Reliability and Quality, computer, Software, Language construct, computer.programming_language

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a72f39b58c3b13487179900bc8ab2af0
https://doi.org/10.1145/3360551