المؤلفون: Hill, Steven M., Heiser, Laura M., Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K., Carlin, Daniel E., Zhang, Yang, Sokolov, Artem, Paull, Evan O., Wong, Chris K., Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V., Favorov, Alexander V., Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W., Long, Byron L., Noren, David P., Bisberg, Alexander J., Mills, Gordon B., Gray, Joe W., Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A., Fertig, Elana J., Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M., Spellman, Paul T., Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach

وصف الملف: text; spreadsheet

Relation: https://tuprints.ulb.tu-darmstadt.de/27016/1/nmeth.3773.pdf; https://tuprints.ulb.tu-darmstadt.de/27016/2/41592_2016_BFnmeth3773_MOESM208_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/3/41592_2016_BFnmeth3773_MOESM209_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/4/41592_2016_BFnmeth3773_MOESM210_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/5/41592_2016_BFnmeth3773_MOESM211_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/6/41592_2016_BFnmeth3773_MOESM212_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/7/41592_2016_BFnmeth3773_MOESM213_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/8/41592_2016_BFnmeth3773_MOESM207_ESM.pdf; Hill, Steven M.; Heiser, Laura M.; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K.; Carlin, Daniel E.; Zhang, Yang; Sokolov, Artem; Paull, Evan O.; Wong, Chris K.; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V.; Favorov, Alexander V.; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W.; Long, Byron L.; Noren, David P.; Bisberg, Alexander J.; Mills, Gordon B.; Gray, Joe W.; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A.; Fertig, Elana J.; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M.; Spellman, Paul T.; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, Sach (2024)Inferring causal molecular networks: empirical assessment through a community-based effort. In: Nature Methods, 2016, 13 (4) doi:10.26083/tuprints-00027016 Article, Secondary publication, Publisher's Version

الاتاحة: http://tuprints.ulb.tu-darmstadt.de/27016/
https://tuprints.ulb.tu-darmstadt.de/27016/1/nmeth.3773.pdf
https://tuprints.ulb.tu-darmstadt.de/27016/2/41592_2016_BFnmeth3773_MOESM208_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/3/41592_2016_BFnmeth3773_MOESM209_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/4/41592_2016_BFnmeth3773_MOESM210_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/5/41592_2016_BFnmeth3773_MOESM211_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/6/41592_2016_BFnmeth3773_MOESM212_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/7/41592_2016_BFnmeth3773_MOESM213_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/8/41592_2016_BFnmeth3773_MOESM207_ESM.pdf
https://www.nature.com/articles/nmeth.3773

المؤلفون: Hill, Steven M, Heiser, Laura M, Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K, Carlin, Daniel E, Zhang, Yang, Sokolov, Artem, Paull, Evan O, Wong, Chris K, Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V, Favorov, Alexander V, Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W, Long, Byron L, Noren, David P, Bisberg, Alexander J, Mills, Gordon B, Gray, Joe W, Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A, Fertig, Elana J, Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M, Spellman, Paul T, Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach

المصدر: Nature Methods. 13(4)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Networking and Information Technology R&D (NITRD), Cancer, Bioengineering, 2.1 Biological and endogenous factors, Generic health relevance, Algorithms, Causality, Computational Biology, Computer Simulation, Gene Expression Profiling, Gene Regulatory Networks, Humans, Models, Biological, Neoplasms, Protein Interaction Mapping, Signal Transduction, Software, Systems Biology, Tumor Cells, Cultured, HPN-DREAM Consortium, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/1v8904dr
https://escholarship.org/content/qt1v8904dr/qt1v8904dr.pdf

المؤلفون: Hoff, Fieke W., van Dijk, Anneke D., Qiu, Yihua, Hu, Chenyue W., Ries, Rhonda E., Ligeralde, Andrew, Jenkins, Gaye N., Gerbing, Robert B., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Alonzo, Todd A., Meshinchi, Soheil, Qutub, Amina A., de Bont, Eveline S.J.M., Horton, Terzah M., Kornblau, Steven M.

المصدر: Hoff , F W , van Dijk , A D , Qiu , Y , Hu , C W , Ries , R E , Ligeralde , A , Jenkins , G N , Gerbing , R B , Gamis , A S , Aplenc , R , Kolb , E A , Alonzo , T A , Meshinchi , S , Qutub , A A , de Bont , E S J M , Horton , T M & Kornblau , S M 2022 , ' Clinical relevance of proteomic profiling in de novo pediatric acute myeloid leukemia ....

وصف الملف: application/pdf

الاتاحة: https://hdl.handle.net/11370/f8c8e213-8dc1-47dd-b6c3-724d9eca62e1
https://research.rug.nl/en/publications/f8c8e213-8dc1-47dd-b6c3-724d9eca62e1
https://doi.org/10.3324/haematol.2021.279672
https://pure.rug.nl/ws/files/287218794/10497_Article_Text_77264_2_10_20220928.pdf

المؤلفون: Mahadevan, Arun S., Long, Byron L., Hu, Chenyue W., Ryan, David T., Grandel, Nicolas E., Britton, George L., Bustos, Marisol, Gonzalez Porras, Maria A., Stojkova, Katerina, Ligeralde, Andrew, Son, Hyeonwi, Shannonhouse, John, Robinson, Jacob T., Warmflash, Aryeh, Brey, Eric M., Kim, Yu Shin, Qutub, Amina A.

المساهمون: Kemp, Melissa L., National Science Foundation, CPRIT, National Institutes of Health, UT Rising STAR

المصدر: PLOS Computational Biology ; volume 18, issue 6, page e1009846 ; ISSN 1553-7358

الاتاحة: http://dx.doi.org/10.1371/journal.pcbi.1009846
https://dx.plos.org/10.1371/journal.pcbi.1009846

المؤلفون: Abbas, Hussein A., Mohanty, Vakul, Wang, Ruiping, Huang, Yuefan, Liang, Shaoheng, Wang, Feng, Zhang, Jianhua, Qiu, Yihua, Hu, Chenyue W., Qutub, Amina A., Dail, Monique, Bolen, Christopher R., Daver, Naval, Konopleva, Marina, Futreal, Andrew, Chen, Ken, Wang, Linghua, Kornblau, Steven M.

وصف الملف: application/pdf

Relation: Abbas, Hussein A., Mohanty, Vakul, Wang, Ruiping, et al. "Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes." Frontiers in Oncology, 11, (2021) Frontiers: https://doi.org/10.3389/fonc.2021.705627.; https://hdl.handle.net/1911/111388; fonc-11-705627; https://doi.org/10.3389/fonc.2021.705627

الاتاحة: https://hdl.handle.net/1911/111388
https://doi.org/10.3389/fonc.2021.705627

المؤلفون: Hoff, Fieke W., Hu, Chenyue W., Qutub, Amina A., Qiu, Yihua, Hornbaker, Marisa J., Bueso‐Ramos, Carlos, Abbas, Hussein A., Post, Sean M., Bont, Eveline S.J.M. de, Kornblau, Steven M.

وصف الملف: application/pdf

Relation: Hoff, Fieke W., Hu, Chenyue W., Qutub, Amina A., et al. "Proteomic Profiling of Acute Promyelocytic Leukemia Identifies Two Protein Signatures Associated with Relapse." PROTEOMICS – Clinical Applications, 13, no. 4 (2019) Wiley: https://doi.org/10.1002/prca.201800133.; https://hdl.handle.net/1911/108034; Hoff_et_al-2019; https://doi.org/10.1002/prca.201800133

الاتاحة: https://hdl.handle.net/1911/108034
https://doi.org/10.1002/prca.201800133

المؤلفون: Ruvolo, Peter P., Hu, Chenyue W., Qiu, Yihua, Ruvolo, Vivian R., Go, Robin L., Hubner, Stefan E., Coombes, Kevin R., Andreeff, Michael, Qutub, Amina A., Kornblau, Steven M.

المساهمون: Leukemia and Lymphoma Society

المصدر: eBioMedicine ; volume 44, page 126-137 ; ISSN 2352-3964

الاتاحة: http://dx.doi.org/10.1016/j.ebiom.2019.05.025
https://api.elsevier.com/content/article/PII:S2352396419303263?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2352396419303263?httpAccept=text/plain

المؤلفون: Xia, Jun, Chiu, Li-Ya, Nehring, Ralf B., Bravo Núñez, María Angélica, Mei, Qian, Perez, Mercedes, Zhai, Yin, Fitzgerald, Devon M., Pribis, John P., Wang, Yumeng, Hu, Chenyue W., Powell, Reid T., LaBonte, Sandra A., Jalali, Ali, Matadamas Guzmán, Meztli L., Lentzsch, Alfred M., Szafran, Adam T., Joshi, Mohan C., Richters, Megan, Gibson, Janet L., Frisch, Ryan L., Hastings, P.J., Bates, David, Queitsch, Christine, Hilsenbeck, Susan G., Coarfa, Cristian, Hu, James C., Siegele, Deborah A., Scott, Kenneth L., Liang, Han, Mancini, Michael A., Herman, Christophe, Miller, Kyle M., Rosenberg, Susan M.

المساهمون: NIH, W.M. Keck Foundation, CPRIT, American Cancer Society, BCM Cytometry and Cell Sorting Core, Integrated Microscopy Core, Dan L. Duncan Comprehensive Cancer Center, John S. Dunn Gulf Coast Consortium for Chemical Genomics

المصدر: Cell ; volume 176, issue 1-2, page 127-143.e24 ; ISSN 0092-8674

الاتاحة: http://dx.doi.org/10.1016/j.cell.2018.12.008
https://api.elsevier.com/content/article/PII:S0092867418316222?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0092867418316222?httpAccept=text/plain

المؤلفون: Hu, Chenyue W., Qutub, Amina A.

المصدر: https://www.intechopen.com/books/6261.

مصطلحات موضوعية: Myeloid Leukemia

Relation: https://mts.intechopen.com/articles/show/title/proteomics-in-acute-myeloid-leukemia

الاتاحة: https://mts.intechopen.com/articles/show/title/proteomics-in-acute-myeloid-leukemia
https://doi.org/10.5772/intechopen.70929

المؤلفون: Hu, Chenyue W., Li, Hanyang, Qutub, Amina A.

المساهمون: Chenyue W. Hu and Hanyang Li and Amina A. Qutub

مصطلحات موضوعية: Clustering, Matrix Factorization, Cancer Subtyping, Gene Expression

وصف الملف: application/pdf

Relation: Is Part Of LIPIcs, Volume 88, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017); https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2017.11

الاتاحة: https://doi.org/10.4230/LIPIcs.WABI.2017.11
https://nbn-resolving.org/urn:nbn:de:0030-drops-76556
https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2017.11

المؤلفون: Hoff, Fieke W., Hu, Chenyue W., Qutub, Amina A., Qiu, Yihua, Graver, Elizabeth, Hoang, Giang, Chauhan, Manasi, de Bont, Eveline S. J. M., Kornblau, Steven M.

المصدر: Hoff , F W , Hu , C W , Qutub , A A , Qiu , Y , Graver , E , Hoang , G , Chauhan , M , de Bont , E S J M & Kornblau , S M 2018 , ' Mycoplasma contamination of leukemic cell lines alters protein expression determined by reverse phase protein arrays ' , Cytotechnology , vol. 70 , no. 6 , pp. 1529-1535 . https://doi.org/10.1007/s10616-018-0244-2

مصطلحات موضوعية: Mycoplasma, RPPA, Cell lines, Proteomics, GENE-EXPRESSION, INFECTIONS

وصف الملف: application/pdf

Relation: https://research.rug.nl/en/publications/1efdc85d-aef2-4102-a10d-8da0a957fcaa

الاتاحة: https://hdl.handle.net/11370/1efdc85d-aef2-4102-a10d-8da0a957fcaa
https://research.rug.nl/en/publications/1efdc85d-aef2-4102-a10d-8da0a957fcaa
https://doi.org/10.1007/s10616-018-0244-2
https://pure.rug.nl/ws/files/76618309/Hoff2018_Article_MycoplasmaContaminationOfLeuke.pdf

المؤلفون: Hoff, Fieke W., Hu, Chenyue W., Qutub, Amina A., de Bont, Eveline S. J. M., Horton, Terzah M., Kornblau, Steven M.

المصدر: Hoff , F W , Hu , C W , Qutub , A A , de Bont , E S J M , Horton , T M & Kornblau , S M 2018 , ' Shining a light on cell signaling in leukemia through proteomics : Relevance for the clinic ' , Expert review of proteomics , vol. 15 , no. 7 , pp. 613-622 . https://doi.org/10.1080/14789450.2018.1487781

مصطلحات موضوعية: Leukemia, Reverse Phase Protein Array (RPPA), biomarkers (or) biomarker discovery, ACUTE MYELOID-LEUKEMIA, ACUTE LYMPHOBLASTIC-LEUKEMIA, ACUTE MYELOGENOUS LEUKEMIA, ANTHRACYCLINE DOSE INTENSIFICATION, ADVERSE PROGNOSTIC-FACTOR, GROUPS 2013 BLUEPRINT, GENE-EXPRESSION, PROTEIN EXPRESSION, STEM-CELLS, CHILDHOOD

Relation: https://research.rug.nl/en/publications/cb6c4797-9209-41ff-889c-86eea54416dc

الاتاحة: https://hdl.handle.net/11370/cb6c4797-9209-41ff-889c-86eea54416dc
https://research.rug.nl/en/publications/cb6c4797-9209-41ff-889c-86eea54416dc
https://doi.org/10.1080/14789450.2018.1487781
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6444923

المؤلفون: Hu, Chenyue W., Li, Hanyang, Qutub, Amina A.

وصف الملف: application/pdf

Relation: Hu, Chenyue W., Li, Hanyang and Qutub, Amina A. "Shrinkage Clustering: a fast and size-constrained clustering algorithm for biomedical applications." BMC Bioinformatics, 19, (2018) BMC: https://doi.org/10.1186/s12859-018-2022-8.; https://hdl.handle.net/1911/102380; https://doi.org/10.1186/s12859-018-2022-8

الاتاحة: https://hdl.handle.net/1911/102380
https://doi.org/10.1186/s12859-018-2022-8

المؤلفون: Pan, Yongming, Xu, Jianqin, Chen, Cheng, Chen, Fangming, Jin, Ping, Zhu, Keyan, Hu, Chenyue W., You, Mengmeng, Chen, Minli, Hu, Fuliang

المصدر: Frontiers in Aging Neuroscience ; volume 10 ; ISSN 1663-4365

الاتاحة: http://dx.doi.org/10.3389/fnagi.2018.00050
http://journal.frontiersin.org/article/10.3389/fnagi.2018.00050/full

المؤلفون: Hoff, Fieke W., van Dijk, Anneke D., Qiu, Yihua, Hu, Chenyue W., Ries, Rhonda E., Ligeralde, Andrew, Jenkins, Gaye N., Gerbing, Robert B., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Alonzo, Todd A., Meshinchi, Soheil, Qutub, Amina A., de Bont, Eveline S.J.M., Horton, Terzah M., Kornblau, Steven M.

المصدر: Haematologica, 107(10), 2329-2343. FERRATA STORTI FOUNDATION

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=narcis______::2b216f5501efd966ac24221b1f3cf054
https://research.rug.nl/en/publications/f8c8e213-8dc1-47dd-b6c3-724d9eca62e1

المؤلفون: Hu, Chenyue W., Qutub, Amina A.

وصف الملف: application/pdf

Relation: https://journal.r-project.org/archive/2016/RJ-2016-023/index.html; Hu, Chenyue W. and Qutub, Amina A. "progenyClust: an R package for Progeny Clustering." The R Journal, 8, no. 1 (2016) The R Foundation: 328-338. https://hdl.handle.net/1911/94351 .; https://hdl.handle.net/1911/94351

الاتاحة: https://hdl.handle.net/1911/94351

المؤلفون: Hu, Chenyue W., Kornblau, Steven M., Slater, John H., Qutub, Amina A.

المساهمون: Chenyue W. Hu, Steven M. Kornblau, John H. Slater & Amina A. Qutub, Slater, John H.

المصدر: Scientific reports ; http://www.nature.com/srep/

وصف الملف: application/pdf

Relation: Hu, C. W. et al. Progeny Clustering: A Method to Identify Biological Phenotypes. Sci. Rep. 5, 12894; doi:10.1038/srep12894 (2015).; http://udspace.udel.edu/handle/19716/17681

الاتاحة: http://udspace.udel.edu/handle/19716/17681
https://doi.org/10.1038/srep12894

المؤلفون: Han, Richard I., Hu, Chenyue W., Loose, David S., Yang, Li, Li, Li, Connell, Jennifer P., Reardon, Michael J., Lawrie, Gerald M., Qutub, Amina A., Morrisett, Joel D., Grande-Allen, K. Jane

المساهمون: National Heart, Lung, and Blood Institute

المصدر: Heart and Vessels ; volume 37, issue 2, page 347-358 ; ISSN 0910-8327 1615-2573

الاتاحة: http://dx.doi.org/10.1007/s00380-021-01975-z
https://link.springer.com/content/pdf/10.1007/s00380-021-01975-z.pdf
https://link.springer.com/article/10.1007/s00380-021-01975-z/fulltext.html

المؤلفون: Han, Richard I., Hu, Chenyue W., Loose, David S., Yang, Li, Li, Li, Connell, Jennifer P., Reardon, Michael J., Lawrie, Gerald M., Qutub, Amina A., Morrisett, Joel D., Grande-Allen, K. Jane

المصدر: Heart & Vessels; Feb2022, Vol. 37 Issue 2, p347-358, 12p

مصطلحات موضوعية: BONE morphogenetic proteins, AORTIC valve, AORTIC valve diseases, HEART valve diseases, ACUTE phase reaction, HEART valve prosthesis implantation

المؤلفون: Hoff, Fieke W., Hu, Chenyue W., Qiu, Yihua, Ligeralde, Andrew, Yoo, Suk-Young, Mahmud, Hasan, de Bont, Eveline S. J. M., Qutub, Amina A., Horton, Terzah M., Kornblau, Steven M.

المصدر: Hoff , F W , Hu , C W , Qiu , Y , Ligeralde , A , Yoo , S-Y , Mahmud , H , de Bont , E S J M , Qutub , A A , Horton , T M & Kornblau , S M 2018 , ' Recognition of Recurrent Protein Expression Patterns in Pediatric Acute Myeloid Leukemia Identified New Therapeutic Targets ' , Molecular Cancer Research , vol. 16 , no. 8 , pp. 1275-1286 . https://doi.org/10.1158/1541-7786.MCR-17-0731

مصطلحات موضوعية: MESSENGER-RNA, SACCHAROMYCES-CEREVISIAE, GENE-EXPRESSION, ARRAYS, MANAGEMENT, ABUNDANCE, AML

الاتاحة: https://hdl.handle.net/11370/95251435-4f36-4a91-b648-ed0da31b0b54
https://research.rug.nl/en/publications/95251435-4f36-4a91-b648-ed0da31b0b54
https://doi.org/10.1158/1541-7786.MCR-17-0731