المؤلفون: Brusselmans, Marius, Carvalho, Luiz Max, Hong, Samuel L., Gao, Jiansi, Matsen IV, Frederick A., Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A., Dudas, Gytis, Baele, Guy

مصطلحات موضوعية: Quantitative Biology - Populations and Evolution, Quantitative Biology - Genomics, Quantitative Biology - Quantitative Methods

URL الوصول: http://arxiv.org/abs/2402.11657

المؤلفون: Holtz, Andrew, Van Weyenbergh, Johan, Hong, Samuel L, Cuypers, Lize, O'Toole, Áine, Dudas, Gytis, Gerdol, Marco, Potter, Barney I, Ntoumi, Francine, Mapanguy, Claujens Chastel Mfoutou, Vanmechelen, Bert, Wawina-Bokalanga, Tony, Van Holm, Bram, Menezes, Soraya Maria, Soubotko, Katja, Van Pottelbergh, Gijs, Wollants, Elke, Vermeersch, Pieter, Jacob, Ann-Sophie, Maes, Brigitte, Obbels, Dagmar, Matheeussen, Veerle, Martens, Geert, Gras, Jérémie, Verhasselt, Bruno, Laffut, Wim, Vael, Carl, Goegebuer, Truus, van der Kant, Rob, Rousseau, Frederic, Schymkowitz, Joost, Serrano, Luis, Delgado, Javier, Wenseleers, Tom, Bours, Vincent, André, Emmanuel, Suchard, Marc A, Rambaut, Andrew, Dellicour, Simon, Maes, Piet, Durkin, Keith, Baele, Guy

المصدر: BMC Infectious Diseases, 24 (1), 1139 (2024-10-10)

مصطلحات موضوعية: COVID-19, Disease spread, Genomic epidemiology, Phylodynamics, Phylogeography, SARS-CoV-2, Spike Glycoprotein, Coronavirus, spike protein, SARS-CoV-2, Humans, Aged, Male, Travel, Belgium/epidemiology, Middle Aged, Female, Adult, Nasopharynx/virology, SARS-CoV-2/genetics, SARS-CoV-2/immunology, COVID-19/immunology, COVID-19/virology, COVID-19/epidemiology, Spike Glycoprotein, Coronavirus/genetics, Spike Glycoprotein, Coronavirus/immunology, Belgium, Nasopharynx, SARS-CoV-2 variants, Infectious Diseases, Human health sciences, Immunology & infectious disease, Sciences de la santé humaine, Immunologie & maladie infectieuse

Relation: https://link.springer.com/content/pdf/10.1186/s12879-024-09967-w.pdf; urn:issn:1471-2334

URL الوصول: https://orbi.uliege.be/handle/2268/323604

المؤلفون: Truong Nguyen, Phuoc, Kant, Ravi, Van den Broeck, Frederik, Suvanto, Maija T, Alburkat, Hussein, Virtanen, Jenni, Ahvenainen, Ella, Castren, Robert, Hong, Samuel L, Baele, Guy, Ahava, Maarit J, Jarva, Hanna, Jokiranta, Suvi Tuulia, Kallio-Kokko, Hannimari, Kekäläinen, Eliisa, Kirjavainen, Vesa, Kortela, Elisa, Kurkela, Satu, Lappalainen, Maija, Liimatainen, Hanna, Suchard, Marc A, Hannula, Sari, Ellonen, Pekka, Sironen, Tarja, Lemey, Philippe, Vapalahti, Olli, Smura, Teemu

المصدر: Communications medicine. 2(1)

مصطلحات موضوعية: SARS-CoV-2, Viral epidemiology, Pneumonia & Influenza, Vaccine Related, Biodefense, Emerging Infectious Diseases, Prevention, Infectious Diseases, Infection, Good Health and Well Being

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5pt054gp
https://escholarship.org/content/qt5pt054gp/qt5pt054gp.pdf

المؤلفون: El Moussaoui, Majdouline, Bontems, Sébastien, Meex, Cécile, Hayette, Marie-Pierre, LEJEUNE, Marie, Hong, Samuel L., Dellicour, Simon, Moutschen, Michel, CAMBISANO, Nadine, Renotte, Nathalie, Bours, Vincent, Darcis, Gilles, Artesi, Maria, Durkin, Keith

المصدر: Virus Evolution, 10 (1), veae073 (2024-03-04)

مصطلحات موضوعية: SARS-CoV-2, COVID-19, within-host evolution, genetic compartmentalization, intrahost evolution, chronic infection, prolonged infection, immunosuppression, ORF8., Human health sciences, Immunology & infectious disease, Sciences de la santé humaine, Immunologie & maladie infectieuse

Relation: https://syndication.highwire.org/content/doi/10.1101/2024.03.03.24303157; https://syndication.highwire.org/content/doi/10.1101/2024.03.03.24303157; urn:issn:2057-1577

URL الوصول: https://orbi.uliege.be/handle/2268/319015

المؤلفون: Lemey, Philippe, Ruktanonchai, Nick, Hong, Samuel L, Colizza, Vittoria, Poletto, Chiara, Van den Broeck, Frederik, Gill, Mandev S, Ji, Xiang, Levasseur, Anthony, Oude Munnink, Bas B, Koopmans, Marion, Sadilek, Adam, Lai, Shengjie, Tatem, Andrew J, Baele, Guy, Suchard, Marc A, Dellicour, Simon

المصدر: Nature. 595(7869)

مصطلحات موضوعية: Infectious Diseases, Prevention, Infection, Good Health and Well Being, COVID-19, Europe, Genome, Viral, Humans, Incidence, Locomotion, Phylogeny, Phylogeography, SARS-CoV-2, Time Factors, Travel, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2gk7g5sg

المؤلفون: Dellicour, Simon, Hong, Samuel L, Vrancken, Bram, Chaillon, Antoine, Gill, Mandev S, Maurano, Matthew T, Ramaswami, Sitharam, Zappile, Paul, Marier, Christian, Harkins, Gordon W, Baele, Guy, Duerr, Ralf, Heguy, Adriana

المصدر: PLoS pathogens. 17(5)

مصطلحات موضوعية: Humans, Prevalence, Phylogeny, Genome, Viral, New York City, Phylogeography, COVID-19, SARS-CoV-2, Microbiology, Immunology, Medical Microbiology, Virology

URL الوصول: https://escholarship.org/uc/item/7qk1f3tm

المؤلفون: Hong, Samuel L, Lemey, Philippe, Suchard, Marc A, Baele, Guy

المصدر: Current Protocols. 1(4)

مصطلحات موضوعية: Biological Sciences, Genetics, Generic health relevance, Bayes Theorem, COVID-19, Computational Biology, Databases, Nucleic Acid, Humans, Phylogeny, Phylogeography, SARS-CoV-2, Sequence Analysis, DNA, Software, Travel, United States, BEAST, Bayesian inference, Markov chain Monte Carlo, phylodynamics, phylogenetics, phylogeography, travel history

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2g11g60f

المؤلفون: Wawina-Bokalanga, Tony, Vanmechelen, Bert, Logist, Anne-Sophie, Bloemen, Mandy, Laenen, Lies, Bontems, Sébastien, Hayette, Marie-Pierre, Meex, Cécile, Meuris, Christelle, Orban, Catherine, André, Emmanuel, Snoeck, Robert, Baele, Guy, Hong, Samuel L., Andrei, Graciela, Maes, Piet

المصدر: eBioMedicine ; volume 110, page 105488 ; ISSN 2352-3964

الاتاحة: https://doi.org/10.1016/j.ebiom.2024.105488
https://api.elsevier.com/content/article/PII:S2352396424005243?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2352396424005243?httpAccept=text/plain

المؤلفون: Sun, Yankuo, Xing, Jiabao, Hong, Samuel L., Bollen, Nena, Xu, Sijia, Li, Yue, Zhong, Jianhao, Gao, Xiaopeng, Zhu, Dihua, Liu, Jing, Gong, Lang, Zhou, Lei, An, Tongqing, Shi, Mang, Wang, Heng, Baele, Guy, Zhang, Guihong

المصدر: Nature Communications ; volume 15, issue 1 ; ISSN 2041-1723

الاتاحة: https://doi.org/10.1038/s41467-024-54697-x
https://www.nature.com/articles/s41467-024-54697-x.pdf
https://www.nature.com/articles/s41467-024-54697-x

المؤلفون: Li, Yimin, Bollen, Nena, Hong, Samuel L, Brusselmans, Marius, Gámbaro, Fabiana, Klaps, Joon, Suchard, Marc A, Rambaut, Andrew, Lemey, Philippe, Dellicour, Simon, Baele, Guy

المساهمون: Schwartz, Russell

المصدر: Bioinformatics ; ISSN 1367-4811

الاتاحة: https://doi.org/10.1093/bioinformatics/btae721
https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae721/60923725/btae721.pdf

المؤلفون: Gallego-García, Pilar, Estévez-Gómez, Nuria, De Chiara, Loretta, Alvariño, Pilar, Juiz-González, Pedro M., Torres-Beceiro, Isabel, Poza, Margarita, Vallejo, Juan A., Rumbo-Feal, Soraya, Conde-Pérez, Kelly, Aja-Macaya, Pablo, Ladra, Susana, Moreno-Flores, Antonio, Gude-González, María J., Coira, Amparo, Aguilera, Antonio, Costa-Alcalde, José J., Trastoy, Rocío, Barbeito-Castiñeiras, Gema, García-Souto, Daniel, Tubio, José M. C., Trigo-Daporta, Matilde, Camacho-Zamora, Pablo, García Costa, Juan, González-Domínguez, María, Canoura-Fernández, Luis, Glez-Peña, Daniel, Pérez-Castro, Sonia, Cabrera, Jorge J., Daviña-Núñez, Carlos, Godoy-Diz, Montserrat, Treinta-Álvarez, Ana Belén, Veiga, María Isabel, Sousa, João Carlos, Osório, Nuno S., Comas, Iñaki, González-Candelas, Fernando, Hong, Samuel L., Bollen, Nena, Dellicour, Simon, Baele, Guy, Suchard, Marc A., Lemey, Philippe, Agulla, Andrés, Bou, Germán, Alonso-García, Pilar, Pérez-del-Molino, María Luisa, García-Campello, Marta, Paz-Vidal, Isabel, Regueiro, Benito, Posada, David

المساهمون: Banco Santander, Conferencia de Rectores de las Universidades Españolas, Consejo Superior de Investigaciones Científicas (España), Xunta de Galicia, European Commission, Research Foundation - Flanders, Wellcome Trust, National Institutes of Health (US), Foundation for Science and Technology, Comas, Iñaki, González-Candelas, Fernando

مصطلحات موضوعية: SARS‐CoV‐2, Dispersal, Phylogeography, Variants of concern

Relation: #PLACEHOLDER_PARENT_METADATA_VALUE#; info:eu-repo/grantAgreement/EC/101094685; info:eu-repo/grantAgreement/EC/101102733; info:eu-repo/grantAgreement/EC/H2020/874850; info:eu-repo/grantAgreement/EC/H2020/725422; Publisher's version; Preprint version available at: Gallego-García, Pilar; Estévez-Gómez, Nuria; De Chiara, Loretta; Alvariño, Pilar; Juiz-González, Pedro M.; Torres-Beceiro, Isabel; Poza, Margarita; Vallejo, Juan A.; Rumbo-Feal, Soraya; Conde-Pérez, Kelly; Aja-Macaya, Pablo; Ladra, Susana; Moreno-Flores, Antonio; Gude-González, María J.; Coira, Amparo; Aguilera, Antonio; Costa-Alcalde, José J.; Trastoy, Rocío; Barbeito-Castiñeiras, Gema; García-Souto, Daniel; Tubio, José M. C.; Trigo-Daporta, Matilde; Camacho-Zamora, Pablo; García Costa, Juan; González-Domínguez, María; Luis Canoura-Fernández,; Glez-Peña, Daniel; Pérez-Castro, Sonia; Cabrera, Jorge J.; Daviña-Núñez, Carlos; Godoy-Diz, Montserrat; Treinta-Álvarez, Ana Belén; Veiga, Maria Isabel; Sousa, João Carlos; Osório, Nuno S.; Comas, Iñaki; González-Candelas, Fernando; Hong, Samuel L.; Bollen, Nena; Dellicour, Simon; Baele, Guy; Suchard, Marc A.; Lemey, Philippe; Andrés Agulla,; Bou, Germán; Alonso-García, Pilar; Pérez-del-Molino, María Luisa; García-Campello, Marta; Paz-Vidal, Isabel; Regueiro, Benito; Posada, David; 2024; Dispersal history of SARS-CoV-2 in Galicia, Spain; [Preprint]; MedRxiv; https://doi.org/10.1101/2024.02.27.24303385; http://hdl.handle.net/10261/348967; https://doi.org/10.1002/jmv.29773; Sí; Journal of Medical Virology 96(7):e29773 (2024); http://hdl.handle.net/10261/362299

الاتاحة: http://hdl.handle.net/10261/362299
https://doi.org/10.1002/jmv.29773

المؤلفون: Lemey, Philippe, Hong, Samuel L, Hill, Verity, Baele, Guy, Poletto, Chiara, Colizza, Vittoria, O'Toole, Áine, McCrone, John T, Andersen, Kristian G, Worobey, Michael, Nelson, Martha I, Rambaut, Andrew, Suchard, Marc A

المصدر: Nature communications. 11(1)

مصطلحات موضوعية: Humans, Pneumonia, Viral, Coronavirus Infections, Bayes Theorem, Phylogeny, Genome, Viral, Travel, Pandemics, Phylogeography, Betacoronavirus, COVID-19, SARS-CoV-2, Genome, Viral, Pneumonia

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9c71c0ws

المؤلفون: Rudin, Christoph, Bollen, Nena, Hong, Samuel L, Wegner, Fanny, Politi, Lida, Mellou, Kassiani, Geenen, Caspar, Gorissen, Sarah, Verhasselt, Bruno, Durkin, Keith, Henin, Coralie, Logist, Anne-Sophie, Dellicour, Simon, Resa, Tobias, Stadler, Tanja, Maes, Piet, Cuypers, Lize, André, Emmanuel, Egli, Adrian, Baele, Guy

المصدر: Euro Surveillance: Bulletin Européen sur les Maladies Transmissibles, 28 (45) (2023-11)

مصطلحات موضوعية: B.1.1.529, COVID-19, Omicron, SARS-CoV-2, contact tracing, epidemiology, phylogenetics, viral spread, Humans, SARS-CoV-2/genetics, Belgium/epidemiology, Switzerland/epidemiology, Czech Republic, Phylogeny, Germany, COVID-19/epidemiology, Water Sports, Belgium, SARS-CoV-2 variants, Switzerland, Public Health, Environmental and Occupational Health, Virology, Life sciences, Microbiology, Sciences du vivant, Microbiologie

Relation: urn:issn:1025-496X; urn:issn:1560-7917

URL الوصول: https://orbi.uliege.be/handle/2268/314153

المؤلفون: Hong, Samuel L, Dellicour, Simon, Vrancken, Bram, Suchard, Marc A, Pyne, Michael T, Hillyard, David R, Lemey, Philippe, Baele, Guy

المصدر: Viruses. 12(2)

مصطلحات موضوعية: Humans, HIV-1, HIV Infections, HIV Seropositivity, Bayes Theorem, Phylogeny, United States, Male, Phylogeography, Sexual and Gender Minorities, BEAGLE, BEAST, HIV, covariates, phylodynamics, phylogeography, predictors, spread, Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5xg2t35m

المؤلفون: Sun, Yankuo, Xing, Jiabao, Hong, Samuel L., Bollen, Nena, Xu, Sijia, Li, Yue, Zhong, Jianhao, Gao, Xiaopeng, Zhu, Dihua, Liu, Jing, Gong, Lang, Zhou, Lei, An, Tongqing, Shi, Mang, Wang, Heng, Baele, Guy, Zhang, Guihong

المصدر: Nature Communications; 12/10/2024, Vol. 15 Issue 1, p1-13, 13p

مصطلحات موضوعية: PORCINE reproductive & respiratory syndrome, AGRICULTURE, LIFE sciences, GENOMICS, SWINE industry

المؤلفون: Cuypers, Lize, Keyaerts, Els, Hong, Samuel L, Gorissen, Sarah, Menezes, Soraya Maria, Starick, Marick, Van Elslande, Jan, Weemaes, Matthias, Wawina-Bokalanga, Tony, Marti-Carreras, Joan, Vanmechelen, Bert, Van Holm, Bram, Bloemen, Mandy, Dogne, Jean-Michel, Dufrasne, François, Durkin, Keith, Ruelle, Jean, De Mendonca, Ricardo, Wollants, Elke, Vermeersch, Pieter, Wattiez, Ruddy, Peeters, Michael, Bakelants, Kate, Denayer, Sarah, Meex, Cécile, Gillet, Laurent, Artesi, Maria, Hayette, Marie-Pierre, Bontems, Sébastien, Bours, Vincent, Gourzonès, Claire, Ek, Olivier, Bureau, Fabrice, Kabamba, Benoit, Gala, Jean-Luc, Bearzatto, Bertrand, Ambroise, Jérôme, Marchant, Arnaud, Henin, Coralie, Haerlingen, Benoit, Delforge, Marie-Luce, Vael, Carl, Berckmans, Lynsey, Selhorst, Philippe, Ariën, Kevin, Van Dooren, Sonia, Hinckel, Bruno, Imamura, Hideo, Janssen, Toon, Caljon, Ben, Soetens, Oriane, Piérard, Denis, Demuyser, Thomas, Michel, Charlotte, Vandenberg, Olivier, van den Wijngaert, Sigi, Zorzi, Giulia, Van Lint, Philippe, Verstrepen, Walter, Naesens, Reinout, Van Lent, Sarah, Hilbert, Pascale, Brohée, Sylvain, Léonard, Pierre-Emmanuel, Karadurmus, Deniz, Gras, Jeremie, Féret, Damien, Lambert, Barbara, Vankeerberghen, Anne, Holderbeke, Astrid, De Beenhouwer, Hans, Cattoir, Lien, Lammens, Christine, Xavier, Britto Basil, Le Mercier, Marie, Coppens, Jasmine, Matheeussen, Veerle, Goossens, Herman, Martens, Geert A., Swaerts, Koen, Van Hoecke, Frederik, Desmet, Dieter, Descheemaeker, Patrick, Bogaerts, Pierre, Degosserie, Jonathan, Denis, Olivier, Huang, Te-Din, Obbels, Dagmar, Valgaeren, Hanne, Frans, Johan, Smismans, Annick, Claus, Paul-Emile, Veltman, Denise, Goegebuer, Truus, Lemmens, Ann, Van den Poel, Bea, De Bock, Sonja, Laffut, Wim, Van Even, Ellen, Van Acker, Jos, Verfaillie, Charlotte, Vanlaere, Elke, De Rauw, Klara, Waumans, Luc, Van Meensel, Britt, Cartuyvels, Reinoud, Raymaekers, Marijke, Verhasselt, Bruno, Hellemans, Jorn, Vanhee, Merijn, Reynders, Marijke, Boulouffe, Caroline, Djiena, Achille, Broucke, Caroline, Catry, Boudewijn, Lagrou, Katrien, Van Ranst, Marc, Neyts, Johan, Baele, Guy, Maes, Piet, André, Emmanuel, Dellicour, Simon, Van Weyenbergh, J

المساهمون: COVID-19 Genomics Belgium Consortium

المصدر: Nature aging ; 2662-8465

مصطلحات موضوعية: Human medicine

الاتاحة: https://hdl.handle.net/10067/1977180151162165141
https://repository.uantwerpen.be/docstore/d:irua:18497

المؤلفون: Dellicour, Simon, Hong, Samuel L., Hill, Verity, Dimartino, Dacia, Marier, Christian, Zappile, Paul, Harkins, Gordon W., Lemey, Philippe, Baele, Guy, Duerr, Ralf, Heguy, Adriana

المساهمون: Stern, Adi, Fonds National de la Recherche Scientifique, European Union Horizon 2020 project MOOD, Research Foundation - Flanders, Fonds de la Recherche Scientifique de Belgique, European Research Council under the European Union's Horizon 2020 research and innovation programme, Wellcome Trust, National Institutes of Health, Stichting Wetenschappelijk Onderzoek Oogziekenhuis, The National Institutes of Health, USA, Internal Funds KU Leuven

المصدر: PLOS Pathogens ; volume 19, issue 4, page e1011348 ; ISSN 1553-7374

الاتاحة: http://dx.doi.org/10.1371/journal.ppat.1011348
https://dx.plos.org/10.1371/journal.ppat.1011348

المؤلفون: Duerr, Ralf, Zhou, Hao, Tada, Takuya, Dimartino, Dacia, Marier, Christian, Zappile, Paul, Wang, Guiqing, Plitnick, Jonathan, Griesemer, Sara B., Girardin, Roxanne, Machowski, Jessica, Bialosuknia, Sean, Lasek-Nesselquist, Erica, Hong, Samuel L., Baele, Guy, Dittmann, Meike, Ortigoza, Mila B., Prasad, Prithiv J., McDonough, Kathleen, Landau, Nathaniel R., St George, Kirsten, Heguy, Adriana

المصدر: iScience ; volume 26, issue 2, page 106075 ; ISSN 2589-0042

الاتاحة: http://dx.doi.org/10.1016/j.isci.2023.106075
https://api.elsevier.com/content/article/PII:S2589004223001529?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2589004223001529?httpAccept=text/plain

المؤلفون: Cuypers, Lize, Dellicour, Simon, Hong, Samuel L, Potter, Barney I, Verhasselt, Bruno, Vereecke, Nick, Lambrechts, Laurens, Durkin, Keith, Bours, Vincent, Klamer, Sofieke, Bayon-Vicente, Guillaume, Vael, Carl, Ariën, Kevin K, De Mendonca, Ricardo, Soetens, Oriane, Michel, Charlotte, Bearzatto, Bertrand, Naesens, Reinout, Gras, Jeremie, Vankeerberghen, Anne, Matheeussen, Veerle, Martens, Geert, Obbels, Dagmar, Lemmens, Ann, Van den Poel, Bea, Van Even, Ellen, De Rauw, Klara, Waumans, Luc, Reynders, Marijke, Degosserie, Jonathan, COVID-19 Genomics Belgium Consortium, Maes, Piet, André, Emmanuel, Baele, Guy

المصدر: Viruses, 14 (10), 2301 (2022-10-20)

مصطلحات موضوعية: Belgium, COVID-19, SARS-CoV-2, genomic surveillance, next-generation sequencing, variants of concern, Humans, Belgium/epidemiology, Genome, Viral, Genomics, SARS-CoV-2/genetics, High-Throughput Nucleotide Sequencing, COVID-19/epidemiology, Pandemics, Infectious Diseases, Virology, Life sciences, Genetics & genetic processes, Sciences du vivant, Génétique & processus génétiques

Relation: https://www.mdpi.com/1999-4915/14/10/2301/pdf; urn:issn:1999-4915

URL الوصول: https://orbi.uliege.be/handle/2268/299183

المؤلفون: El Moussaoui, Majdouline, Maes, Nathalie, Hong, Samuel L., Lambert, Nicolas, Gofflot, Stéphanie, DELLOT, Patricia, Belhadj, Yasmine, Huynen, Pascale, Hayette, Marie-Pierre, Meex, Cécile, Bontems, Sébastien, Defêche, Justine, Godderis, Lode, Molenberghs, Geert, Meuris, Christelle, Artesi, Maria, Durkin, Keith, Rahmouni, Souad, GREGOIRE, Céline, BEGUIN, Yves, MOUTSCHEN, Michel, Dellicour, Simon, DARCIS, Gilles

المصدر: Viruses, 14 (6), 1302 (2022-06-14)

مصطلحات موضوعية: Virology, Infectious Diseases, Human health sciences, Immunology & infectious disease, Sciences de la santé humaine, Immunologie & maladie infectieuse

Relation: info:eu-repo/grantAgreement/EC/H2020/874850; https://www.mdpi.com/1999-4915/14/6/1302/pdf; 10.3390/v14061302; urn:issn:1999-4915

URL الوصول: https://orbi.uliege.be/handle/2268/292521