المؤلفون: Naderi, Julian, Magalhaes, Alexandre P., Kibar, Gözde, Stik, Grégoire, Zhang, Yaotian, Mackowiak, Sebastian D., Wieler, Hannah M., Rossi, Francesca, Buschow, Rene, Christou-Kent, Marie, Alcoverro-Bertran, Marc, Graf, T. (Thomas), Vingron, Martin, Hnisz, Denes

مصطلحات موضوعية: Developmental biology, Gene regulation

وصف الملف: application/pdf

Relation: Nat Cell Biol. 2024 Aug;26(8):1309-21; info:eu-repo/grantAgreement/ES/3PE/PCI2021-122032-2B; http://hdl.handle.net/10230/61198

الاتاحة: http://hdl.handle.net/10230/61198
https://doi.org/10.1038/s41556-024-01411-0

المؤلفون: Landshammer, Alexandro, Bolondi, Adriano, Kretzmer, Helene, Much, Christian, Buschow, René, Rose, Alina, Wu, Hua-Jun, Mackowiak, Sebastian D, Braendl, Bjoern, Giesselmann, Pay, Tornisiello, Rosaria, Parsi, Krishna Mohan, Huey, Jack, Mielke, Thorsten, Meierhofer, David, Maehr, René, Hnisz, Denes, Michor, Franziska, Rinn, John L, Meissner, Alexander

المساهمون: Diabetes Center of Excellence, Morningside Graduate School of Biomedical Sciences, Program in Molecular Medicine, Jack Huey

المصدر: eLife ; 12 ; United States ; England

مصطلحات موضوعية: SOX17, cell biology, endoderm, enhancer, genetics, genomics, human, lncRNAs

Relation: eLife; https://doi.org/10.7554/elife.83077; Landshammer A, Bolondi A, Kretzmer H, Much C, Buschow R, Rose A, Wu HJ, Mackowiak SD, Braendl B, Giesselmann P, Tornisiello R, Parsi KM, Huey J, Mielke T, Meierhofer D, Maehr R, Hnisz D, Michor F, Rinn JL, Meissner A. T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation. Elife. 2023 Jan 31;12:e83077. doi:10.7554/eLife.83077. PMID: 36719724; PMCID: PMC9889090.; http://hdl.handle.net/20.500.14038/53425

الاتاحة: https://doi.org/10.7554/eLife.83077
https://hdl.handle.net/20.500.14038/53425

المؤلفون: Mensah, Martin A., Niskanen, Henri, Tzschach, Andreas, Spielmann, Malte, Horn, Denise, Hnisz, Denes

المصدر: Nature. - 614 (2023) , 564–571, ISSN: 1476-4687

وصف الملف: pdf

Relation: https://freidok.uni-freiburg.de/data/234087

الاتاحة: https://freidok.uni-freiburg.de/data/234087
https://nbn-resolving.org/urn:nbn:de:bsz:25-freidok-2340871
https://doi.org/10.1038/s41586-022-05682-1
https://freidok.uni-freiburg.de/dnb/download/234087

المؤلفون: Christou-Kent, Marie, Cuartero, Sergi, Garcia-Cabau, Carla, Ruehle, Julia, Naderi, Julian, Erber, Julia, Neguembor, Maria Victoria, Plana Carmona, Marcos, 1993-, Alcoverro-Bertran, Marc, Andrés Aguayo, Luisa de, Klonizakis, Antonios, Julià Vilella, Eric, Lynch, Cian J., Serrano, Manuel, Hnisz, Denes, Salvatella, Xavier, Graf, T. (Thomas), Stik, Grégoire

مصطلحات موضوعية: 3D genome organization, CEBPA, CP: Molecular biology, Chromatin hubs, Compartments, Condensates, Gene regulation, Phase separation, Transcription, Transdifferentiation

وصف الملف: application/pdf

Relation: Cell Rep. 2023 Aug 29;42(8):112897; info:eu-repo/grantAgreement/EC/H2020/648201; info:eu-repo/grantAgreement/ES/3PE/PCI2021-122032-2B; info:eu-repo/grantAgreement/ES/2PE/PID2020-117950RA-I00; info:eu-repo/grantAgreement/ES/2PE/PRE2018-084684; info:eu-repo/grantAgreement/ES/1PE/BIO2015-70092-R; info:eu-repo/grantAgreement/ES/2PE/PID2019-110198RB-I00; http://hdl.handle.net/10230/58140; http://dx.doi.org/10.1016/j.celrep.2023.112897

الاتاحة: http://hdl.handle.net/10230/58140
https://doi.org/10.1016/j.celrep.2023.112897

المؤلفون: Bressin, Annkatrin, Jasnovidova, Olga, Arnold, Mirjam, Altendorfer, Elisabeth, Trajkovski, Filip, Kratz, Thomas A., Handzlik, Joanna E., Hnisz, Denes, Mayer, Andreas

مصطلحات موضوعية: Transcription, Transcriptomics, enhancer transcription, ddc:570

وصف الملف: 18 Seiten; application/pdf

Relation: https://refubium.fu-berlin.de/handle/fub188/41433; http://dx.doi.org/10.17169/refubium-41155

الاتاحة: https://refubium.fu-berlin.de/handle/fub188/41433
https://doi.org/10.17169/refubium-41155
https://doi.org/10.1038/s41467-023-40633-y

المؤلفون: Landshammer, Alexandro, Bolondi, Adriano, Kretzmer, Helene, Much, Christian, Buschow, René, Rose, Alina, Wu, Hua-Jun, Mackowiak, Sebastian D, Braendl, Bjoern, Giesselmann, Pay, Tornisiello, Rosaria, Parsi, Krishna Mohan, Huey, Jack, Mielke, Thorsten, Meierhofer, David, Maehr, René, Hnisz, Denes, Michor, Franziska, Rinn, John L, Meissner, Alexander

المساهمون: National Institutes of Health, Max Planck Society

المصدر: eLife ; volume 12 ; ISSN 2050-084X

الاتاحة: http://dx.doi.org/10.7554/elife.83077
https://cdn.elifesciences.org/articles/83077/elife-83077-v2.pdf
https://cdn.elifesciences.org/articles/83077/elife-83077-v2.xml
https://elifesciences.org/articles/83077

المؤلفون: Basu, Shaon, Martínez-Cristóbal, Paula, Frigolé-Vivas, Marta, Pesarrodona, Mireia, Lewis, Michael, Szulc, Elzbieta, Bañuelos, C. Adriana, Sánchez-Zarzalejo, Carolina, Bielskutė, Stasė, Zhu, Jiaqi, Pombo-García, Karina, Garcia-Cabau, Carla, Zodi, Levente, Dockx, Hannes, Smak, Jordann, Kaur, Harpreet, Batlle, Cristina, Mateos, Borja, Biesaga, Mateusz, Escobedo, Albert, Bardia, Lídia, Verdaguer, Xavier, Ruffoni, Alessandro, Mawji, Nasrin R., Wang, Jun, Obst, Jon K., Tam, Teresa, Brun-Heath, Isabelle, Ventura, Salvador, Meierhofer, David, García, Jesús, Robustelli, Paul, Stracker, Travis H., Sadar, Marianne D., Riera, Antoni, Hnisz, Denes, Salvatella, Xavier

المصدر: Nature Structural & Molecular Biology ; volume 30, issue 12, page 1958-1969 ; ISSN 1545-9993 1545-9985

الاتاحة: http://dx.doi.org/10.1038/s41594-023-01159-5
https://www.nature.com/articles/s41594-023-01159-5.pdf
https://www.nature.com/articles/s41594-023-01159-5

المؤلفون: Dejosez, Marion, Dall’Agnese, Alessandra, Ramamoorthy, Mahesh, Platt, Jesse, Yin, Xing, Hogan, Megan, Brosh, Ran, Weintraub, Abraham S., Hnisz, Denes, Abraham, Brian J., Young, Richard A., Zwaka, Thomas P.

المصدر: Cell Reports ; volume 42, issue 5, page 112505 ; ISSN 2211-1247

الاتاحة: http://dx.doi.org/10.1016/j.celrep.2023.112505
https://api.elsevier.com/content/article/PII:S2211124723005168?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2211124723005168?httpAccept=text/plain

المؤلفون: Asimi, Vahid, Sampath Kumar, Abhishek, Niskanen, Henri, Riemenschneider, Christina, Hetzel, Sara, Naderi, Julian, Fasching, Nina, Popitsch, Niko, Du, Manyu, Kretzmer, Helene, Smith, Zachary D., Weigert, Raha, Walther, Maria, Mamde, Sainath, Meierhofer, David, Wittler, Lars, Buschow, René, Timmermann, Bernd, Cisse, Ibrahim I., Ameres, Stefan L., Meissner, Alexander, Hnisz, Denes

المصدر: Nature Genetics ; volume 54, issue 8, page 1238-1247 ; ISSN 1061-4036 1546-1718

الاتاحة: http://dx.doi.org/10.1038/s41588-022-01132-w
https://www.nature.com/articles/s41588-022-01132-w.pdf
https://www.nature.com/articles/s41588-022-01132-w

المؤلفون: Nobile, Clarissa J, Fox, Emily P, Hartooni, Nairi, Mitchell, Kaitlin F, Hnisz, Denes, Andes, David R, Kuchler, Karl, Johnson, Alexander D

المصدر: mBio. 5(3)

مصطلحات موضوعية: Microbiology, Medical Microbiology, Biomedical and Clinical Sciences, Biological Sciences, Antimicrobial Resistance, Infectious Diseases, 2.2 Factors relating to the physical environment, Infection, Antifungal Agents, Biofilms, Candida albicans, Candidiasis, Drug Resistance, Fungal, Fluconazole, Fungal Proteins, Gene Expression Regulation, Fungal, Histone Deacetylases, Humans, Microbial Sensitivity Tests, Biochemistry and cell biology, Medical microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/97v9t79d
https://escholarship.org/content/qt97v9t79d/qt97v9t79d.pdf

المؤلفون: Sabari, Benjamin R., Dall’Agnese, Alessandra, Boija, Ann, Klein, Isaac A., Coffey, Eliot L., Shrinivas, Krishna, Abraham, Brian J., Hannett, Nancy M., Zamudio, Alicia V., Manteiga, John C., Li, Charles H., Guo, Yang E., Day, Daniel S., Schuijers, Jurian, Vasile, Eliza, Malik, Sohail, Hnisz, Denes, Lee, Tong Ihn, Cisse, Ibrahim I., Roeder, Robert G., Sharp, Phillip A., Chakraborty, Arup K., Young, Richard A.

المصدر: Science, 2018 Jul . 361(6400), 379-379.

URL الوصول: https://www.jstor.org/stable/26497535

المؤلفون: Landshammer, Alexandro, Bolondi, Adriano, Kretzmer, Helene, Much, Christian, Buschow, René, Rose, Alina, Wu, Hua-Jun, Mackowiak, Sebastian, Braendl, Bjoern, Giesselmann, Pay, Tornisiello, Rosaria, Parsi, Krishna Mohan, Huey, Jack, Mielke, Thorsten, Meierhofer, David, Maehr, René, Hnisz, Denes, Michor, Franziska, Rinn, John L., Meissner, Alexander

المساهمون: Diabetes Center of Excellence, Program in Molecular Medicine

المصدر: bioRxiv

مصطلحات موضوعية: Genomics, lncRNAs, endoderm

Relation: Now published in eLife doi:10.7554/elife.83077; bioRxiv; https://doi.org/10.1101/2022.09.12.507139; http://hdl.handle.net/20.500.14038/51500

الاتاحة: https://doi.org/10.1101/2022.09.12.507139
https://hdl.handle.net/20.500.14038/51500

المؤلفون: Hnisz, Denes, Bardet, Anaïs F, Nobile, Clarissa J, Petryshyn, Andriy, Glaser, Walter, Schöck, Ulrike, Stark, Alexander, Kuchler, Karl

المصدر: PLoS genetics. 8(12)

مصطلحات موضوعية: Chromatin, Hyphae, Candida albicans, Histone Deacetylases, Transcription Factors, Transcription, Genetic, Gene Expression Regulation, Fungal, Protein Binding, Morphogenesis, Kinetics, Open Reading Frames, Promoter Regions, Genetic, Transcription, Genetic, Gene Expression Regulation, Fungal, Promoter Regions, Developmental Biology, Genetics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4kf067jv

المؤلفون: Adane, Biniam, Alexe, Gabriela, Seong, Bo Kyung A., Lu, Diana, Hwang, Elizabeth E., Hnisz, Denes, Lareau, Caleb A., Ross, Linda, Lin, Shan, Dela Cruz, Filemon S., Richardson, Melissa, Weintraub, Abraham Selby, Wang, Sarah, Iniguez, Amanda Balboni, Dharia, Neekesh V., Conway, Amy Saur, Robichaud, Amanda L., Tanenbaum, Benjamin, Krill-Burger, John M., Vazquez, Francisca, Schenone, Monica, Berman, Jason N., Kung, Andrew L., Carr, Steven A., Aryee, Martin J., Young, Richard A., Crompton, Brian D., Stegmaier, Kimberly

المساهمون: Massachusetts Institute of Technology. Department of Biology

المصدر: Prof. Richard Young

وصف الملف: application/pdf

Relation: http://dx.doi.org/10.1016/j.ccell.2021.05.007; Cancer Cell; https://hdl.handle.net/1721.1/131197; Adane, Biniam et al. "STAG2 loss rewires oncogenic and developmental programs to promote metastasis in Ewing sarcoma." 39, 6 (June 2016): P827-844.e10. © 2021 Elsevier Inc

الاتاحة: https://hdl.handle.net/1721.1/131197

المؤلفون: Adane, Biniam, Alexe, Gabriela, Seong, Bo Kyung A., Lu, Diana, Hwang, Elizabeth E., Hnisz, Denes, Lareau, Caleb A., Ross, Linda, Lin, Shan, Dela Cruz, Filemon S., Richardson, Melissa, Weintraub, Abraham S., Wang, Sarah, Iniguez, Amanda Balboni, Dharia, Neekesh V., Conway, Amy Saur, Robichaud, Amanda L., Tanenbaum, Benjamin, Krill-Burger, John M., Vazquez, Francisca, Schenone, Monica, Berman, Jason N., Kung, Andrew L., Carr, Steven A., Aryee, Martin J., Young, Richard A., Crompton, Brian D., Stegmaier, Kimberly

المصدر: Cancer Cell ; volume 39, issue 6, page 827-844.e10 ; ISSN 1535-6108

الاتاحة: http://dx.doi.org/10.1016/j.ccell.2021.05.007
https://api.elsevier.com/content/article/PII:S1535610821002737?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1535610821002737?httpAccept=text/plain

المؤلفون: Basu, Shaon, Mackowiak, Sebastian D., Niskanen, Henri, Knezevic, Dora, Asimi, Vahid, Grosswendt, Stefanie, Geertsema, Hylkje, Ali, Salaheddine, Jerković, Ivana, Ewers, Helge, Mundlos, Stefan, Meissner, Alexander, Ibrahim, Daniel M., Hnisz, Denes

المساهمون: National Institutes of Health, Max-Planck-Gesellschaft, Deutsche Forschungsgemeinschaft

المصدر: Cell ; volume 181, issue 5, page 1062-1079.e30 ; ISSN 0092-8674

الاتاحة: http://dx.doi.org/10.1016/j.cell.2020.04.018
https://api.elsevier.com/content/article/PII:S0092867420304815?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0092867420304815?httpAccept=text/plain

المؤلفون: Hnisz, Denes, Weintraub, Abraham S., Day, Daniel S., Valton, Anne-Laure, Bak, Rasmus O., Li, Charles H., Goldmann, Johanna, Lajoie, Bryan R., Fan, Zi Peng, Sigova, Alla A., Reddy, Jessica, Borges-Rivera, Diego, Lee, Tong Ihn, Jaenisch, Rudolf, Porteus, Matthew H., Dekker, Job, Young, Richard A.

المصدر: Science, 2016 Mar . 351(6280), 1454-1458.

URL الوصول: http://www.jstor.org/stable/24742667

المؤلفون: Liu, X. Shawn, Wu, Hao, Krzisch, Marine, Wu, Xuebing, Graef, John, Muffat, Julien, Hnisz, Denes, Li, Charles Han, Yuan, Bingbing, Xu, Chuanyun, Li, Yun, Vershkov, Dan, Cacace, Angela, Young, Richard A., Jaenisch, Rudolf

المساهمون: Massachusetts Institute of Technology. Department of Biology

المصدر: PMC

وصف الملف: application/pdf

Relation: http://dx.doi.org/10.1016/j.cell.2018.01.012; Cell; https://hdl.handle.net/1721.1/126002; Liu, X.Shawn et al. "Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene." Cell 172, 5 (February 2018): 979-992 © 2018 Elsevier Inc

الاتاحة: https://hdl.handle.net/1721.1/126002

المؤلفون: Sabari, Benjamin R., Dall’Agnese, Alessandra, Boija, Ann, Klein, Isaac A., Abraham, Brian J., Hannett, Nancy M., Guo, Yang E., Day, Daniel S., Schuijers, Jurian, Hnisz, Denes, Lee, Tong Ihn, Coffey, Eliot Leo, Shrinivas, Krishna, Zamudio Montes de Oca, Alicia, Manteiga, John Colonnese, Li, Charles Han, Vasile, Eliza, Cisse, Ibrahim I, Chakraborty, Arup K, Sharp, Phillip A., Young, Richard A.

المساهمون: Massachusetts Institute of Technology. Institute for Medical Engineering & Science, Massachusetts Institute of Technology. Department of Biological Engineering, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Chemical Engineering, Massachusetts Institute of Technology. Department of Chemistry, Massachusetts Institute of Technology. Department of Physics, Koch Institute for Integrative Cancer Research at MIT, Coffey, Eliot Leo, Shrinivas, Krishna, Zamudio Montes de Oca, Alicia, Manteiga, John Colonnese, Li, Charles Han, Vasile, Eliza, Cisse, Ibrahim I, Sharp, Phillip A, Chakraborty, Arup K, Young, Richard A

المصدر: PMC

وصف الملف: application/pdf

Relation: http://dx.doi.org/10.1126/science.aar3958; Science; http://hdl.handle.net/1721.1/120962; Sabari, Benjamin R. et al. “Coactivator Condensation at Super-Enhancers Links Phase Separation and Gene Control.” Science 361, 6400 (June 2018): eaar3958 © 2018 The Authors; orcid:0000-0002-4167-9385; orcid:0000-0001-6263-2423; orcid:0000-0002-0385-6176; orcid:0000-0001-8091-6112; orcid:0000-0002-8272-658X; orcid:0000-0002-8764-1809; orcid:0000-0003-1465-1691; orcid:0000-0003-1268-9602; orcid:0000-0001-8855-8647

الاتاحة: http://hdl.handle.net/1721.1/120962

المؤلفون: Sigova, Alla A., Hannett, Nancy M., Day, Daniel S., Abraham, Brian J., Cohen, Malkiel A., Nabet, Behnam, Buckley, Dennis L., Guo, Yang Eric, Hnisz, Denes, Bradner, James E., Gray, Nathanael S., Weintraub, Abraham Selby, Li, Charles Han, Zamudio Montes de Oca, Alicia, Jaenisch, Rudolf, Young, Richard A.

المساهمون: Massachusetts Institute of Technology. Department of Biology, Weintraub, Abraham Selby, Li, Charles Han, Zamudio Montes de Oca, Alicia, Jaenisch, Rudolf, Young, Richard A

المصدر: PMC

وصف الملف: application/pdf

Relation: http://dx.doi.org/10.1016/J.CELL.2017.11.008; Cell; http://hdl.handle.net/1721.1/119424; Weintraub, Abraham S., Charles H. Li, Alicia V. Zamudio, Alla A. Sigova, Nancy M. Hannett, Daniel S. Day, Brian J. Abraham, et al. “YY1 Is a Structural Regulator of Enhancer-Promoter Loops.” Cell 171, no. 7 (December 2017): 1573–1588.e28. © 2017 Elsevier Inc.; orcid:0000-0003-0998-9882; orcid:0000-0001-8091-6112; orcid:0000-0001-6263-2423; orcid:0000-0001-8855-8647

الاتاحة: http://hdl.handle.net/1721.1/119424