نتائج البحث - "Guthrie, Violeta Beleva"

1

Academic Journal

Experimental and In Silico Analysis of TEM β‑Lactamase Adaptive Evolution

المؤلفون: Standley, Melissa, Blay, Vincent, Guthrie, Violeta Beleva, Kim, Jay, Lyman, Audrey, Moya, Andrés, Karchin, Rachel, Camps, Manel

المصدر: ACS Infectious Diseases. 8(12)

مصطلحات موضوعية: Genetics, Generic health relevance, beta-Lactamases, Evolution, Molecular, Cefotaxime, Drug Resistance, Bacterial, Gain of Function Mutation, Bacteria, Epistasis, Genetic, Protein Folding, evolution, fitness landscape, epistasis, contingency, selection, antibiotic resistance, Medical Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0rv5j6w7
https://escholarship.org/content/qt0rv5j6w7/qt0rv5j6w7.pdf

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2

Academic Journal

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

المؤلفون: Jain, Shantanu, Bakolitsa, Constantina, Brenner, Steven E., Radivojac, Predrag, Moult, John, Repo, Susanna, Hoskins, Roger A., Andreoletti, Gaia, Barsky, Daniel, Chellapan, Ajithavalli, Chu, Hoyin, Dabbiru, Navya, Kollipara, Naveen K., Ly, Melissa, Neumann, Andrew J., Pal, Lipika R., Odell, Eric, Pandey, Gaurav, Peters-Petrulewicz, Robin C., Srinivasan, Rajgopal, Yee, Stephen F., Yeleswarapu, Sri Jyothsna, Zuhl, Maya, Adebali, Ogun, Patra, Ayoti, Beer, Michael A., Hosur, Raghavendra, Peng, Jian, Bernard, Brady M., Berry, Michael, Dong, Shengcheng, Boyle, Alan P., Adhikari, Aashish, Chen, Jingqi, Hu, Zhiqiang, Wang, Robert, Wang, Yaqiong, Miller, Maximilian, Wang, Yanran, Bromberg, Yana, Turina, Paola, Capriotti, Emidio, Han, James J., Ozturk, Kivilcim, Carter, Hannah, Babbi, Giulia, Bovo, Samuele, di Lena, Pietro, Martelli, Pier Luigi, Savojardo, Castrense, Casadio, Rita, Cline, Melissa S., de Baets, Greet, Bonache, Sandra, Díez, Orland, Gutiérrez-Enríquez, Sara, Fernández, Alejandro, Montalban, Gemma, Ootes, Lars, Özkan, Selen, Padilla, Natàlia, Riera, Casandra, de la Cruz, Xavier, Diekhans, Mark, Huwe, Peter J., Wei, Qiong, Xu, Qifang, Dunbrack, Roland L., Gotea, Valer, Elnitski, Laura, Margolin, Gennady, Fariselli, Piero, Kulakovskiy, Ivan V., Makeev, Vsevolod J., Penzar, Dmitry D., Vorontsov, Ilya E., Favorov, Alexander V., Forman, Julia R., Hasenahuer, Marcia, Fornasari, Maria S., Parisi, Gustavo, Avsec, Ziga, Çelik, Muhammed H., Nguyen, Thi Yen Duong, Gagneur, Julien, Shi, Fang-Yuan, Edwards, Matthew D., Guo, Yuchun, Tian, Kevin, Zeng, Haoyang, Gifford, David K., Göke, Jonathan, Zaucha, Jan, Gough, Julian, Ritchie, Graham R. S., Frankish, Adam, Mudge, Jonathan M., Harrow, Jennifer, Young, Erin L., Yu, Yao, Huff, Chad D., Murakami, Katsuhiko, Nagai, Yoko, Imanishi, Tadashi, Mungall, Christopher J., Jacobsen, Julius O. B., Kim, Dongsup, Jeong, Chan-Seok, Jones, David T., Li, Mulin Jun, Guthrie, Violeta Beleva, Bhattacharya, Rohit, Chen, Yun-Ching, Douville, Christopher, Fan, Jean, Kim, Dewey, Masica, David, Niknafs, Noushin, Sengupta, Sohini, Tokheim, Collin, Turner, Tychele N., Yeo, Hui Ting Grace, Karchin, Rachel, Shin, Sunyoung, Welch, Rene, Keles, Sunduz, Li, Yue, Kellis, Manolis, Corbi-Verge, Carles, Strokach, Alexey V., Kim, Philip M., Klein, Teri E., Mohan, Rahul, Sinnott-Armstrong, Nicholas A., Wainberg, Michael, Kundaje, Anshul, Gonzaludo, Nina, Mak, Angel C. Y., Chhibber, Aparna, Lam, Hugo Y. K., Dahary, Dvir, Fishilevich, Simon, Lancet, Doron, Lee, Insuk, Bachman, Benjamin, Katsonis, Panagiotis, Lua, Rhonald C., Wilson, Stephen J., Lichtarge, Olivier, Bhat, Rajendra R., Sundaram, Laksshman, Viswanath, Vivek, Bellazzi, Riccardo, Nicora, Giovanna, Rizzo, Ettore, Limongelli, Ivan, Mezlini, Aziz M., Chang, Ray, Kim, Serra, Lai, Carmen, O’Connor, Robert, Topper, Scott, van den Akker, Jeroen, Zhou, Alicia Y., Zimmer, Anjali D., Mishne, Gilad, Bergquist, Timothy R., Breese, Marcus R., Guerrero, Rafael F., Jiang, Yuxiang, Kiga, Nikki, Li, Biao, Mort, Matthew, Pagel, Kymberleigh A., Pejaver, Vikas, Stamboulian, Moses H., Thusberg, Janita, Mooney, Sean D., Teerakulkittipong, Nuttinee, Cao, Chen, Kundu, Kunal, Yin, Yizhou, Yu, Chen-Hsin, Kleyman, Michael, Lin, Chiao-Feng, Stackpole, Mary, Mount, Stephen M., Eraslan, G. kcen, Mueller, Nikola S., Naito, Tatsuhiko, Rao, Aliz R., Azaria, Johnathan R., Brodie, Aharon, Ofran, Yanay, Garg, Aditi, Pal, Debnath, Hawkins-Hooker, Alex, Kenlay, Henry, Reid, John, Mucaki, Eliseos J., Rogan, Peter K., Schwarz, Jana M., Searls, David B., Lee, Gyu Rie, Seok, Chaok, Krämer, Andreas, Shah, Sohela, Huang, ChengLai V., Kirsch, Jack F., Shatsky, Maxim, Cao, Yue, Chen, Haoran, Karimi, Mostafa, Moronfoye, Oluwaseyi, Sun, Yuanfei, Shen, Yang, Shigeta, Ron, Ford, Colby T., Nodzak, Conor, Uppal, Aneeta, Shi, Xinghua, Joseph, Thomas, Kotte, Sujatha, Rana, Sadhna, Rao, Aditya, Saipradeep, V. G., Sivadasan, Naveen, Sunderam, Uma, Stanke, Mario, Su, Andrew, Adzhubey, Ivan, Jordan, Daniel M., Sunyaev, Shamil, Rousseau, Frederic, Schymkowitz, Joost, van Durme, Joost, Tavtigian, Sean V., Carraro, Marco, Giollo, Manuel, Tosatto, Silvio C. E., Adato, Orit, Carmel, Liran, Cohen, Noa E., Fenesh, Tzila, Holtzer, Tamar, Juven-Gershon, Tamar, Unger, Ron, Niroula, Abhishek, Olatubosun, Ayodeji, Väliaho, Jouni, Yang, Yang, Vihinen, Mauno, Wahl, Mary E., Chang, Billy, Chong, Ka Chun, Hu, Inchi, Sun, Rui, Wu, William Ka Kei, Xia, Xiaoxuan, Zee, Benny C., Wang, Maggie H., Wang, Meng, Wu, Chunlei, Lu, Yutong, Chen, Ken, Yang, Yuedong, Yates, Christopher M., Kreimer, Anat, Yan, Zhongxia, Yosef, Nir, Zhao, Huying, Wei, Zhipeng, Yao, Zhaomin, Zhou, Fengfeng, Folkman, Lukas, Zhou, Yaoqi, Daneshjou, Roxana, Altman, Russ B., Inoue, Fumitaka, Ahituv, Nadav, Arkin, Adam P., Lovisa, Federica, Bonvini, Paolo, Bowdin, Sarah, Gianni, Stefano, Mantuano, Elide, Minicozzi, Velia, Novak, Leonore, Pasquo, Alessandra, Pastore, Annalisa, Petrosino, Maria, Puglisi, Rita, Toto, Angelo, Veneziano, Liana, Chiaraluce, Roberta, Ball, Mad P., Bobe, Jason R., Church, George M., Consalvi, Valerio, Cooper, David N., Buckley, Bethany A., Sheridan, Molly B., Cutting, Garry R., Scaini, Maria Chiara, Cygan, Kamil J., Fredericks, Alger M., Glidden, David T., Neil, Christopher, Rhine, Christy L., Fairbrother, William G., Alontaga, Aileen Y., Fenton, Aron W., Matreyek, Kenneth A., Starita, Lea M., Fowler, Douglas M., Löscher, Britt-Sabina, Franke, Andre, Adamson, Scott I., Graveley, Brenton R., Gray, Joe W., Malloy, Mary J., Kane, John P., Kousi, Maria, Katsanis, Nicholas, Schubach, Max, Kircher, Martin, Tang, Paul L. F., Kwok, Pui-Yan, Lathrop, Richard H., Clark, Wyatt T., Yu, Guoying K., LeBowitz, Jonathan H., Benedicenti, Francesco, Bettella, Elisa, Bigoni, Stefania, Cesca, Federica, Mammi, Isabella, Marino-Buslje, Cristina, Milani, Donatella, Peron, Angela, Polli, Roberta, Sartori, Stefano, Stanzial, Franco, Toldo, Irene, Turolla, Licia, Aspromonte, Maria C., Bellini, Mariagrazia, Leonardi, Emanuela, Liu, Xiaoming, Marshall, Christian, McCombie, W. Richard, Elefanti, Lisa, Menin, Chiara, Meyn, M. Stephen, Murgia, Alessandra, Nadeau, Kari C. Y., Neuhausen, Susan L., Nussbaum, Robert L., Pirooznia, Mehdi, Potash, James B., Dimster-Denk, Dago F., Rine, Jasper D., Sanford, Jeremy R., Snyder, Michael, Cote, Atina G., Sun, Song, Verby, Marta W., Weile, Jochen, Roth, Frederick P., Tewhey, Ryan, Sabeti, Pardis C., Campagna, Joan, Refaat, Marwan M., Wojciak, Julianne, Grubb, Soren, Schmitt, Nicole, Shendure, Jay, Spurdle, Amanda B., Stavropoulos, Dimitri J., Walton, Nephi A., Zandi, Peter P., Ziv, Elad, Burke, Wylie, Chen, Flavia, Carr, Lawrence R., Martinez, Selena, Paik, Jodi, Harris-Wai, Julie, Yarborough, Mark, Fullerton, Stephanie M., Koenig, Barbara A., McInnes, Gregory, Shigaki, Dustin, Chandonia, John-Marc, Furutsuki, Mabel, Kasak, Laura, Yu, Changhua, Chen, Rui, Friedberg, Iddo, Getz, Gad A., Cong, Qian, Kinch, Lisa N., Zhang, Jing, Grishin, Nick V., Voskanian, Alin, Kann, Maricel G., Tran, Elizabeth, Ioannidis, Nilah M., Hunter, Jesse M., Udani, Rupa, Cai, Binghuang, Morgan, Alexander A., Sokolov, Artem, Stuart, Joshua M., Minervini, Giovanni, Monzon, Alexander M., Batzoglou, Serafim, Butte, Atul J., Greenblatt, Marc S., Hart, Reece K., Hernandez, Ryan, Hubbard, Tim J. P., Kahn, Scott, O’Donnell-Luria, Anne, Ng, Pauline C., Shon, John, Veltman, Joris

المصدر: Jain , S , Bakolitsa , C , Brenner , S E , Radivojac , P , Moult , J , Repo , S , Hoskins , R A , Andreoletti , G , Barsky , D , Chellapan , A , Chu , H , Dabbiru , N , Kollipara , N K , Ly , M , Neumann , A J , Pal , L R , Odell , E , Pandey , G , Peters-Petrulewicz , R C , Srinivasan , R , Yee , S F , Yeleswarapu , S J , Zuhl , M ....

الاتاحة: https://research.vumc.nl/en/publications/a936c5c2-8176-4e3d-a48d-5db276714a29
https://doi.org/10.1186/s13059-023-03113-6
http://www.scopus.com/inward/record.url?scp=85187866396&partnerID=8YFLogxK

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3

Academic Journal

Network Analysis of Protein Adaptation: Modeling the Functional Impact of Multiple Mutations

المؤلفون: Guthrie, Violeta Beleva, Masica, David L, Fraser, Andrew, Federico, Joseph, Fan, Yunfan, Camps, Manel, Karchin, Rachel

المصدر: MOLECULAR BIOLOGY AND EVOLUTION. 35(6)

مصطلحات موضوعية: functional impact of multiple mutations, network analysis, protein adaptation, beta lactamase, antibiotic resistance, Genetics, Evolutionary Biology, Biochemistry And Cell Biology, Biochemistry and Cell Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/93n672j7

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4

Academic Journal

Validation of a Circulating Tumor DNA-Based Next-Generation Sequencing Assay in a Cohort of Patients with Solid tumors: A Proposed Solution for Decentralized Plasma Testing

المصدر: The Oncologist ; volume 26, issue 11, page e1971-e1981 ; ISSN 1083-7159 1549-490X

الاتاحة: http://dx.doi.org/10.1002/onco.13905
https://onlinelibrary.wiley.com/doi/pdf/10.1002/onco.13905
https://onlinelibrary.wiley.com/doi/full-xml/10.1002/onco.13905
https://academic.oup.com/oncolo/article-pdf/26/11/e1971/42204093/oncolo_26_11_e1971.pdf

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5

Academic Journal

Multi-region Whole Exome Sequencing of Intraductal Papillary Mucinous Neoplasms Reveals Frequent Somatic KLF4 Mutations Predominantly in Low-Grade Regions

المساهمون: Surgery, School of Medicine

المصدر: PMC

مصطلحات موضوعية: Intraductal papillary mucinous neoplasm, Pancreatic precursor lesion, Whole exome sequencing, KLF4, Phylogenetic analysis, Cyst fluid, Somatic mutation

وصف الملف: application/pdf

Relation: Gut; Fujikura K, Hosoda W, Felsenstein M, et al. Multiregion whole-exome sequencing of intraductal papillary mucinous neoplasms reveals frequent somatic KLF4 mutations predominantly in low-grade regions. Gut. 2021;70(5):928-939. doi:10.1136/gutjnl-2020-321217; https://hdl.handle.net/1805/33943

الاتاحة: https://hdl.handle.net/1805/33943

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