المؤلفون: Govindarajan Sudha, Claudio Bassot, John Lamb, Nanjiang Shu, Yan Huang, Arne Elofsson

المصدر: PLoS Computational Biology, Vol 17, Iss 8, p e1009278 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/f962e7ca6d774f08888af5e65cb3b774

المؤلفون: Necci, Marco, Piovesan, Damiano, Hoque, M. T., Walsh, Ian, Iqbal, Sumaiya, Vendruscolo, Michele, Sormanni, Pietro, Wang, Chen, Raimondi, Daniele, Sharma, Ronesh, Zhou, Yaoqi, Litfin, Thomas, Galzitskaya, Oxxana Valerianovna, Lobanov, Michail Yu, Vranken, Wim, Wallner, Björn, Mirabello, Claudio, Malhis, Nawar, Dosztányi, Zsuzsanna, ErdÅ‘s, Gábor, Mészáros, Bálint, Gao, Jianzhao, Wang, Kui, Hu, Gang, Wu, Zhonghua, Sharma, Alok, Hanson, Jack, Callebaut, Isabelle, Bitard-Feildel, Tristan, Orlando, Gabriele, Peng, Zhenling, Xu, Jinbo, Wang, Sheng, Jones, David T., Cozzetto, Domenico, Meng, Fanchi, Yan, Jing, Gsponer, Jörg, Cheng, Jianlin, Wu, Tianqi, Kurgan, Lukasz, Promponas, Vasilis J., Tamana, Stella, Marino-Buslje, Cristina, Martínez-Pérez, Elisabeth, Chasapi, Anastasia, Ouzounis, Christos, Dunker, A. Keith, Kajava, Andrey V, Leclercq, Jeremy Y., Aykac-Fas, Burcu, Lambrughi, Matteo, Maiani, Emiliano, Papaleo, Elena, Chemes, Lucía Beatriz, Ãlvarez, Lucía, González-Foutel, Nicolás S., Iglesias, Valentin, Pujols Pujol, Jordi, Ventura, Salvador, Palopoli, Nicolas, Benítez, Guillermo I, Parisi, Gustavo, Bassot, Claudio, Elofsson, Arne, Govindarajan, Sudha, Lamb, John, Salvatore, Marco, Hatos, András, Monzon, Alexander Miguel, Bevilacqua, Martina, MiÄetić, Ivan, Minervini, Giovanni, Paladin, Lisanna, Quaglia, Federica, Leonardi, Emanuela, Davey, Norman E., Horvath, Tamas, Kovacs, Orsolya Panna, Murvai, Nikoletta, Pancsa, Rita, Schad, Eva, Szabo, Beata, Tantos, Agnes, Macedo-Ribeiro, Sandra, Manso, Jose Antonio, Barbosa Pereira, Pedro José, Davidović, Radoslav, Veljkovic, Nevena, Hajdu-Soltész, Borbála, Pajkos, Mátyás, Szaniszló, Tamás, Guharoy, Mainak, Lazar, Tamas, Macossay-Castillo, Mauricio, Tompa, Peter, Tosatto, Silvio

مصطلحات موضوعية: Amino Acid Sequence, Computational Biology, Databases, Protein, Intrinsically Disordered Proteins, Protein Binding, Protein Conformation, Protein Folding, Software

وصف الملف: application/pdf

Relation: European Commission 778247; Nature Methods; Vol. 18 (May 2021), p. 472-481; https://ddd.uab.cat/record/249476; urn:10.1038/s41592-021-01117-3; urn:oai:ddd.uab.cat:249476; urn:scopus_id:85104988931; urn:articleid:15487105v18p472; urn:pmid:33875885; urn:pmc-uid:8105172; urn:pmcid:PMC8105172; urn:oai:pubmedcentral.nih.gov:8105172; urn:oai:egreta.uab.cat:publications/7d3e8ef5-91b4-4b72-9416-5ee19c3c84dd

الاتاحة: https://ddd.uab.cat/record/249476

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Sequence_and_topology_alignments_between_Na_H_exchanger_1_and_DUF819_families_/15183034

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s003

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Molecular_basis_of_Broken-reentrant_helix_transition_/15183037

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s004

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Benchmark_of_the_trRosetta_models_against_the_existing_structure_S2_Table_of_the_CP_AT_transporters_/15183028

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s001

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Models_obtained_by_4_different_methods_trRosetta_RaptorX_DeepMetaPsicov_and_PconsC4_/15183031

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s002

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/KR_bias_plots_/15183040

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s005

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/S6_Fig_-/15183043

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s006

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Sequence_and_topology_alignment_between_SBF_1_and_Mem_trans_families_/15183046

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s007

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Identification_of_Broken_or_reentrant_type_of_transporter_/15183064

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s012

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Information_about_the_MSAs_for_each_family_/15183058

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s011

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Sequence_and_topology_alignment_between_full-length_Na_H_exchanger_1_and_Na_H_Exchanger_2_subfamilies_Same_fold-type_/15183049

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s008

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Sequence_and_topology_alignment_between_pairs_of_families_within_the_same_fold-type_containing_full-length_Glt_symporter_and_2HCT_/15183052

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s009

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/journal_contribution/Sequence_and_topology_alignment_between_Na_H_Exchanger_1_and_KdgT_families_/15183055

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.s010

المؤلفون: Selot, Ruchita, Balakrishnan, Balaji, Cheemadan, Sabna, Govindarajan, Sudha, Gadkari, Rupali, Srinivasan, N., Jayandharan, Giridhara R.

المصدر: Molecular Therapy ; volume 23, page S179 ; ISSN 1525-0016

الاتاحة: http://dx.doi.org/10.1016/s1525-0016(16)34060-6
https://api.elsevier.com/content/article/PII:S1525001616340606?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1525001616340606?httpAccept=text/plain

المؤلفون: Tsirigos, Konstantinos D., Govindarajan, Sudha, Bassot, Claudio, Västermark, Åke, Lamb, John, Shu, Nanjiang, Elofsson, Arne

المصدر: Current opinion in structural biology. 50:9-17

وصف الملف: print

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-160275

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/figure/Transition_and_alignments_between_2HCT_and_PSE_1_/15183088

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.g004

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/figure/Comparison_between_PSE_1_Reentrant-helix-reentrant_fold-type_and_2HCT_CPA-reentrant_fold-type_/15183076

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.g002

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/figure/Fig_3_-/15183082

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.g003

المؤلفون: Govindarajan Sudha (11285959), Claudio Bassot (7022288), John Lamb (272066), Nanjiang Shu (11285962), Yan Huang (46805), Arne Elofsson (20831)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Evolutionary Biology, Ecology, Cancer, Plant Biology, Virology, Computational Biology, Biological Sciences not elsewhere classified, div >< p, undergone substantial changes, several topological transitions, transporters , topological variations, types based, structural transitions, structural models, shuffling events, shed light, searchable database, se <, mainly caused, gene duplication, four fold, families using, evolutionary history, described fold, create models, cpafold (<

Relation: https://figshare.com/articles/figure/Change_in_orientation_in_reentrant_transporters_by_internal_duplications_/15183100

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009278.g006