المؤلفون: Andrew Ndhlovu, So Ri La, Pierre M. Durand

المصدر: Journal of Molecular Evolution. 90:95-113

مصطلحات موضوعية: Evolution, Molecular, Bacteria, Death Domain, Genome, Archaeal, Caspases, Genetics, Apoptosis, Archaea, Molecular Biology, Phylogeny, Ecology, Evolution, Behavior and Systematics, Peptide Hydrolases

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e69ae38d47e827e0d208d5e6f963594a
https://doi.org/10.1007/s00239-021-10044-y

المؤلفون: Cynthia Maria Chibani, Alexander Mahnert, Guillaume Borrel, Alexandre Almeida, Almut Werner, Jean-François Brugère, Simonetta Gribaldo, Robert D. Finn, Ruth A. Schmitz, Christine Moissl-Eichinger

المساهمون: Christian-Albrechts University of Kiel, Institute for Microbiology, Medical University Graz, Institut Pasteur [Paris] (IP), Biologie Évolutive de la Cellule Microbienne - Evolutionary Biology of the Microbial Cell, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, The Wellcome Trust Sanger Institute [Cambridge], Laboratoire Microorganismes : Génome et Environnement (LMGE), Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne (UCA), BioTechMed-Graz, Graz University of Technology [Graz] (TU Graz)-Karl-Franzens-Universität Graz-Medical University Graz, The research was funded in whole, or in part, by the Austrian Science Fund (FWF) (P 32697, P 30796 given to C.M.E.). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission. R.S. received partial funding from the Kiel Marine science cluster at the Christian-Albrechts-University (CAU) and the German Ministry of Education and Science, BMBF (no. 031B0851B), which is highly appreciated. C.M.C. and A.W. used the resources of the high-memory computer nodes and computation support from the Computing Center of CAU Kiel. A.A. and R.F. were supported by EMBL. J.F.B. thanks Hub Innovergne for a grant (‘Investissements d’Avenir’, no. 16-IDEX-0001 CAP 20–25). G.B. and S.G. thank the Institut Pasteur and the French National Research Agency (ANR) for their support through grants Methevol (grant no. ANR-19-CE02-0005-01) and Archevol (grant no. ANR-16-CE02-0005-01)., C.M.E. and A.M. thank the Medical University of Graz for the computational resources of the MedBioNode and the Life Science Compute Cluster (LiSC) operated by the Computational Systems Biology group at the University of Vienna. We thank the Medical University of Graz ZMF Galaxy Team: Core Facility Computational Bioanalytics, Medical University of Graz, funded by the Austrian Federal Ministry of Education, Science and Research, Hochschulraum-Strukturmittel 2016 grant as part of BioTechMed Graz. We thank K. Bick for discussion on taxonomic naming, and the scientific support provided by Z. Hameed, ANR-19-CE02-0005,METHEVOL,Caractérisation de nouveaux acteurs et des transitions évolutives dans le métabolisme du méthane, un métabolisme clef dans l'évolution du domaine Archaea(2019), ANR-16-CE02-0005,Arch-Evol,Approches phylogenomiques pour étudier l'origine et évolution des Archées(2016)

المصدر: Nature Microbiology
Nature Microbiology, 2022, 7 (1), pp.48-61. ⟨10.1038/s41564-021-01020-9⟩

مصطلحات موضوعية: Adult, Male, Microbiology (medical), Adolescent, Immunology, [SDV.MP.PRO]Life Sciences [q-bio]/Microbiology and Parasitology/Protistology, Applied Microbiology and Biotechnology, Microbiology, Article, Young Adult, Genome, Archaeal, Genetics, Humans, Child, Phylogeny, Microbiota, Infant, Newborn, Infant, Cell Biology, Middle Aged, Archaea, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Gastrointestinal Microbiome, Child, Preschool, Female, Databases, Nucleic Acid, Microbial genetics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8536807b00b1ca6819d8ce9918cd0d4a
https://doi.org/10.1038/s41564-021-01020-9

المؤلفون: Kelly M, Zatopek, Vladimir, Potapov, Jennifer L, Ong, Andrew F, Gardner

المصدر: Current Protocols. 2

مصطلحات موضوعية: Medical Laboratory Technology, DNA Repair, General Immunology and Microbiology, Pyrimidine Dimers, Genome, Archaeal, General Neuroscience, Escherichia coli, Health Informatics, Ribonucleotides, General Pharmacology, Toxicology and Pharmaceutics, General Biochemistry, Genetics and Molecular Biology, DNA Damage

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e8f524061699e6a6b8b2575c0d4f606
https://doi.org/10.1002/cpz1.595

المؤلفون: Tamas Vincze, Richard J. Roberts, Dana Macelis, Janos Posfai

المصدر: Nucleic Acids Research

مصطلحات موضوعية: Sequence analysis, Information Storage and Retrieval, Genomics, Biology, computer.software_genre, DNA Restriction-Modification Enzymes, Genome, DNA sequencing, Substrate Specificity, Rebase, Genome, Archaeal, Databases, Genetic, Genetics, Database Issue, Databases, Protein, DNA Modification Methylases, Internet, Binding Sites, Database, Computational Biology, Sequence Analysis, DNA, Articles, DNA Restriction Enzymes, Protein Structure, Tertiary, Restriction enzyme, Genes, biology.protein, Restriction modification system, computer, Genome, Bacterial, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1cc9eda833e82afaf4909573f3c802d
https://pubmed.ncbi.nlm.nih.gov/36318248

المؤلفون: Panagiotis S, Adam, Till L V, Bornemann, Alexander J, Probst

المصدر: Methods in molecular biology (Clifton, N.J.). 2522

مصطلحات موضوعية: Genome, Archaeal, Alkanes, Archaea, Methane, Phylogeny

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::f1221d366f8686b970f334524b7ae0c8
https://pubmed.ncbi.nlm.nih.gov/36125771

المؤلفون: Till L V, Bornemann, Panagiotis S, Adam, Alexander J, Probst

المصدر: Methods in molecular biology (Clifton, N.J.). 2522

مصطلحات موضوعية: Genome, Archaeal, Nucleic Acids, Metagenome, RNA, Lipids

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::0da7cb9d541fff00715ddd29fdb30003
https://pubmed.ncbi.nlm.nih.gov/36125772

المؤلفون: Fabian, Blombach, Kathy L, Smollett, Finn, Werner

المصدر: Methods in molecular biology (Clifton, N.J.). 2522

مصطلحات موضوعية: Genome, Archaeal, Chromatin Immunoprecipitation Sequencing, DNA-Directed RNA Polymerases, Archaea, Transcription Factors

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::9255d0b5bc9d81218826f6c7b2e98786
https://pubmed.ncbi.nlm.nih.gov/36125752

المؤلفون: Patrick, Forterre

المصدر: Methods in molecular biology (Clifton, N.J.). 2522

مصطلحات موضوعية: Bacteria, Genome, Archaeal, RNA, Ribosomal, 16S, Eukaryota, Archaea, Biological Evolution

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::f12ea900d0ab5fc579651dea3ef7e10f
https://pubmed.ncbi.nlm.nih.gov/36125740

المؤلفون: Noriko Sugiyama, Shintaro Nagaoka, Satoshi Nakamura, Rie Yatsunami

المصدر: Bioscience, Biotechnology, and Biochemistry. 85:1986-1994

مصطلحات موضوعية: 3-Isopropylmalate Dehydrogenase, Archaeal Proteins, Dehydrogenase, Applied Microbiology and Biotechnology, Biochemistry, Potassium Chloride, Analytical Chemistry, law.invention, chemistry.chemical_compound, Biopolymers, Genome, Archaeal, law, Amino Acid Sequence, Molecular Biology, Oxidative decarboxylation, Chemistry, Organic Chemistry, Temperature, General Medicine, Hydrogen-Ion Concentration, Halobacteriales, Monomer, Halophilic archaeon, Recombinant DNA, Haloarcula japonica, Biotechnology, Homotetramer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2f55dddb60864cfa1c46531b484ee9f2
https://doi.org/10.1093/bbb/zbab122

المؤلفون: Maria Chuvochina, Christian Rinke, David W. Waite, Pierre-Alain Chaumeil, Adrián A. Davín, William B. Whitman, Donovan H. Parks, Philip Hugenholtz, Aaron J. Mussig

المصدر: Nature Microbiology. 6:946-959

مصطلحات موضوعية: Microbiology (medical), Immunology, Biology, computer.software_genre, Applied Microbiology and Biotechnology, Microbiology, Genome, Evolution, Molecular, 03 medical and health sciences, Genome, Archaeal, Phylogenetics, Taxonomy (general), Polyphyly, Databases, Genetic, Genetics, Phylogeny, 030304 developmental biology, 0303 health sciences, Phylogenetic tree, Database, 030306 microbiology, Phylum, Bacterial taxonomy, Genomics, Cell Biology, Reference Standards, Archaea, computer, Superphylum

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f64d3ffccbe433b836c6c015c0e0888
https://doi.org/10.1038/s41564-021-00918-8

المؤلفون: Wei Xu, Lei Cheng, Wen-Cong Huang, Yang Liu, Xinxu Zhang, Anastasia N. Nikolskaya, Meng Li, Eugene V. Koonin, Yuri I. Wolf, Zhu-Hua Luo, Mingwei Cai, Cui-Jing Zhang, Kira S. Makarova

المصدر: Nature. 593:553-557

مصطلحات موضوعية: 0303 health sciences, Multidisciplinary, biology, Phylum, 030302 biochemistry & molecular biology, Eukaryota, biology.organism_classification, Archaea, Biological Evolution, Genome, 03 medical and health sciences, Sister group, Genome, Archaeal, Molecular evolution, Evolutionary biology, Phylogenetics, Phylogenomics, Horizontal gene transfer, Metagenomics, Phylogeny, 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30ce7fc72df1bad5d17636cefac7adfb
https://doi.org/10.1038/s41586-021-03494-3

المؤلفون: Jian Zhou, Qiong Xue, Zhenqiang Zuo, Hua Xiang, Dahe Zhao

المصدر: Archives of Microbiology. 203:2335-2342

مصطلحات موضوعية: China, Natronorubrum, Sodium Chloride, Biochemistry, Microbiology, Genome, 03 medical and health sciences, chemistry.chemical_compound, Genome, Archaeal, RNA, Ribosomal, 16S, Botany, Genetics, Molecular Biology, Genome size, Phylogeny, 030304 developmental biology, Whole genome sequencing, Phosphatidylglycerol, Base Composition, 0303 health sciences, Halobacteriaceae, biology, Phylogenetic tree, Strain (chemistry), 030306 microbiology, Nucleic Acid Hybridization, Sequence Analysis, DNA, General Medicine, 16S ribosomal RNA, biology.organism_classification, Lipids, Molecular Typing, Lakes, DNA, Archaeal, chemistry

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca60402116fa6f802e04c82ee4d433f6
https://doi.org/10.1007/s00203-021-02207-8

المؤلفون: Leonardo, Ledesma, Rafael, Hernandez-Guerrero, Ernesto, Perez-Rueda

المصدر: Methods in molecular biology (Clifton, N.J.). 2516

مصطلحات موضوعية: Bacteria, Genome, Archaeal, Humans, DNA, Archaea, Genome, Bacterial, Transcription Factors

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::3914aebb796257ceee1e557f04f8fa38
https://pubmed.ncbi.nlm.nih.gov/35922624

المؤلفون: Arkadiy I. Garber, Filip Husnik, John P. McCutcheon, Mitch J Syberg-Olsen, Patrick J. Keeling

المصدر: Molecular biology and evolution. 39(7)

مصطلحات موضوعية: Bacteria, archaea, Pseudogene, pseudogene, Computational biology, prediction, Biology, ENCODE, Genome, Population bottleneck, annotation, Prokaryotic Cells, Genome, Archaeal, Genetics, dN/dS, Identification (biology), Evolutionary dynamics, Molecular Biology, Gene, genome, Ecology, Evolution, Behavior and Systematics, Selection (genetic algorithm), Pseudogenes, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8fdea38a2ffb888af9e44333fb340e1e
https://pubmed.ncbi.nlm.nih.gov/35801562

المؤلفون: Raphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield

المصدر: BMC biology, vol 20, iss 1

مصطلحات موضوعية: Genome, Physiology, Bioinformatics, Comparative genomics, Protein family, Eukaryota, Cell Biology, Plant Science, Genomics, Biological Sciences, Archaea, General Biochemistry, Genetics and Molecular Biology, Structural Biology, Genome, Archaeal, Archaeal, Genetics, Generic health relevance, General Agricultural and Biological Sciences, Ecology, Evolution, Behavior and Systematics, Phylogeny, Biotechnology, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8a9f9a433a0bef24925bf4a3212e7822
https://escholarship.org/uc/item/4kx7120f

المؤلفون: Jean-Philippe Vernadet, Christine Pourcel, David Couvin, Marie Touchon, Gilles Vergnaud, Nicolas Villeriot, Claire Toffano-Nioche

المساهمون: Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Unité Transmission, Réservoir et Diversité des Pathogènes [Pasteur Guadeloupe, France] (TReD-Path), Institut Pasteur de la Guadeloupe, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Institut Français de Bioinformatique (IFB) [ANR-11-INSB-0013]. Funding for open access charge: CNRS., Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Séquence, Structure et Fonction des ARN (SSFA), Département Biologie des Génomes (DBG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)

المصدر: Nucleic Acids Research
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, Oxford University Press, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz915⟩

مصطلحات موضوعية: Transposable element, MESH: CRISPR-Cas Systems, MESH: Genome, Archaeal, [SDV]Life Sciences [q-bio], CRISPR-Associated Proteins, Computational biology, MESH: Genome, Bacterial, Genome, 03 medical and health sciences, MESH: Software, Plasmid, Phylogenetics, Genome, Archaeal, Databases, Genetic, Genetics, CRISPR, Database Issue, Clustered Regularly Interspaced Short Palindromic Repeats, MESH: Phylogeny, Gene, MESH: Databases, Genetic, Phylogeny, 030304 developmental biology, 0303 health sciences, biology, Bacteria, 030306 microbiology, MESH: CRISPR-Associated Proteins, Palindrome, Prokaryote, biology.organism_classification, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Archaea, MESH: Bacteria, MESH: Archaea, MESH: Clustered Regularly Interspaced Short Palindromic Repeats, CRISPR-Cas Systems, Genome, Bacterial, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bbc45025670057b240066b57dff4789b
http://europepmc.org/articles/PMC7145573

المؤلفون: Daniel J. G. Lahr, Paulo G. Hofstatter

المصدر: Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Journal of Molecular Evolution

مصطلحات موضوعية: Eukaryotes, DNA repair, DNA damage, Computational biology, mutL, DNA Mismatch Repair, Genome, Mismatch repair, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, Meiosis, Genome, Archaeal, mutS, Gene duplication, Genetics, Asgard Archaea, Molecular Biology, Ecology, Evolution, Behavior and Systematics, 030304 developmental biology, REPARAÇÃO DE DNA, 0303 health sciences, biology, Eukaryota, biology.organism_classification, Archaea, Eukaryotic Cells, chemistry, Original Article, DNA mismatch repair, 030217 neurology & neurosurgery, DNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9cd7b7c17e9c1fb90a3fd94ae36286e1
https://doi.org/10.1007/s00239-020-09979-5

المؤلفون: Petra Rettberg, Dagmar Koschnitzki, Ralf Moeller, Reinhard Rachel, Reinhard Wirth, Stefan Leuko, Kristina Beblo-Vranesevic, Harald Huber, Bartos Przybyla

المصدر: Archives of Microbiology

مصطلحات موضوعية: DNA Replication, Survival, Ignicoccus, Microorganism, Radiation Dosage, Radiation Survival, Radiation Tolerance, Biochemistry, Microbiology, Ionizing radiation, VBNC, Strahlenbiologie, Extremophiles, 03 medical and health sciences, Microbial ecology, Genome, Archaeal, Radiation, Ionizing, Genetics, Extremophile, Molecular Biology, 030304 developmental biology, Original Paper, 0303 health sciences, Radiation, Microbial Viability, biology, Obligate, Desulfurococcaceae, 030306 microbiology, Thermophile, Genome integrity, General Medicine, biology.organism_classification, Cell biology, Ignicoccus hospitalis, Archaea

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3651cec5ba70283c86bb93b20441bdb4
https://doi.org/10.1007/s00203-020-02125-1

المؤلفون: Farideh Chitsaz, Narmada Thanki, A Scott Durkin, Azat Badretdin, Jiyao Wang, Wenjun Li, Marc Gwadz, James S. Song, George Coulouris, Françoise Thibaud-Nissen, Kathleen R O’Neill, Michael DiCuccio, Aron Marchler-Bauer, Christopher J. Lanczycki, Noreen R. Gonzales, Mingzhang Yang, Chanjuan Zheng, Vyacheslav Chetvernin, Daniel H. Haft, Myra K. Derbyshire, Roxanne A. Yamashita

المصدر: Nucleic Acids Res

مصطلحات موضوعية: Internet, Protein family, Computational Biology, Proteins, Molecular Sequence Annotation, Enzyme Commission number, Genomics, Genome project, Computational biology, Biology, Genome, Entrez, User-Computer Interface, Annotation, Genome, Archaeal, Databases, Genetic, Genetics, RefSeq, Database Issue, Data Mining, Data Curation, Genome, Bacterial, Reference genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4abe9be36ae164020859ea6292a580f
https://doi.org/10.1093/nar/gkaa1105

المؤلفون: Edward S. Buckler, Emre Cimen, Sarah E. Jensen

المصدر: Nucleic Acids Res

مصطلحات موضوعية: Thermometers, Base pair, RNA Stability, Biology, Genome, Reduction (complexity), RNA, Transfer, Genome, Archaeal, Phylogenetics, Anticodon, Genetics, Computer Simulation, Base Pairing, Phylogeny, Thermophilic organism, Bacteria, Base Sequence, Models, Genetic, Temperature, Computational Biology, biology.organism_classification, Adaptation, Physiological, Archaea, Transfer RNA, Nucleic Acid Conformation, Neural Networks, Computer, Data pre-processing, Biological system, Genome, Bacterial

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::61fe53c4857820de52758f50e90e3cd6
https://doi.org/10.1093/nar/gkaa1030