المؤلفون: Ute A. Hoffmann, Elisabeth Lichtenberg, Said N. Rogh, Raphael Bilger, Viktoria Reimann, Florian Heyl, Rolf Backofen, Claudia Steglich, Wolfgang R. Hess, Annegret Wilde

المصدر: RNA Biology, Vol 21, Iss 1, Pp 373-390 (2024)

مصطلحات موضوعية: RNA degradation, RNase E, cyanobacteria, Synechocystis, 5’ sensing, RNA-seq, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1547-6286; https://doaj.org/toc/1555-8584

URL الوصول: https://doaj.org/article/0c276ae73c8d4650852133f254d0e160

المؤلفون: Saskia Hiltemann, Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg, Pratik D Jagtap, Thomas Wollmann, Anthony Bretaudeau, Nadia Goué, Timothy J Griffin, Coline Royaux, Yvan Le Bras, Subina Mehta, Anna Syme, Frederik Coppens, Bert Droesbeke, Nicola Soranzo, Wendi Bacon, Fotis Psomopoulos, Cristóbal Gallardo-Alba, John Davis, Melanie Christine Föll, Matthias Fahrner, Maria A Doyle, Beatriz Serrano-Solano, Anne Claire Fouilloux, Peter van Heusden, Wolfgang Maier, Dave Clements, Florian Heyl, Galaxy Training Network, Björn Grüning, Bérénice Batut

المصدر: PLoS Computational Biology, Vol 19, Iss 1, p e1010752 (2023)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/418bd96910b049ef9a470281072747d4

المؤلفون: Ute A. Hoffmann, Elisabeth Lichtenberg, Said N. Rogh, Raphael Bilger, Viktoria Reimann, Florian Heyl, Rolf Backofen, Claudia Steglich, Wolfgang R. Hess, Annegret Wilde

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::2d7a41e5315b6bb9e3e5d0d17dc31e5d
https://doi.org/10.1101/2023.01.13.523895

المؤلفون: Alexander Peltzer, Felipe Marques de Almeida, Olga Botvinnik, Gregor Sturm, Kevin Menden, Sangram K Sahu, nf-core bot, Gisela Gabernet, Pol Alvarez, Robert Syme, Tom Kelly, Florian Heyl, PETER BAILEY, Harshil Patel, Alex Thiery, Regina Hertfelder Reynolds, Azedine Zoufir, Hanka Medova, Khajidu, Marcel Ribeiro-Dantas, Wei-An Chen, Maxime U Garcia, Jeremy Leipzig, Phil Ewels, ameynert, Valentin Marteau

Relation: https://github.com/nf-core/scrnaseq/tree/2.3.0; https://doi.org/10.5281/zenodo.3568187; https://doi.org/10.5281/zenodo.7893878; oai:zenodo.org:7893878

الاتاحة: https://doi.org/10.5281/zenodo.7893878

المؤلفون: Alexander Peltzer, Felipe Marques de Almeida, Olga Botvinnik, Gregor Sturm, Kevin Menden, Sangram K Sahu, nf-core bot, Gisela Gabernet, Pol Alvarez, Tom Kelly, Florian Heyl, Robert Syme, PETER BAILEY, Alex Thiery, Harshil Patel, Regina Hertfelder Reynolds, Azedine Zoufir, Hanka Medova, Khajidu, Marcel Ribeiro Dantas, Wei-An Chen, Maxime U Garcia, Jeremy Leipzig, Phil Ewels, ameynert, Valentin Marteau

Relation: https://github.com/nf-core/scrnaseq/tree/2.2.0; https://doi.org/10.5281/zenodo.3568187; https://doi.org/10.5281/zenodo.7751399; oai:zenodo.org:7751399

الاتاحة: https://doi.org/10.5281/zenodo.7751399

المؤلفون: Saskia Hiltemann (4409881), Helena Rasche (6307673), Simon Gladman (147497), Hans-Rudolf Hotz (14352182), Delphine Larivière (9238692), Daniel Blankenberg (8997360), Pratik D. Jagtap (640691), Thomas Wollmann (14352185), Anthony Bretaudeau (116576), Nadia Goué (14352188), Timothy J. Griffin (39969), Coline Royaux (11202081), Yvan Le Bras (5564414), Subina Mehta (5721521), Anna Syme (14352191), Frederik Coppens (3191250), Bert Droesbeke (6385352), Nicola Soranzo (95104), Wendi Bacon (13170009), Fotis Psomopoulos (6895334), Cristóbal Gallardo-Alba (10797634), John Davis (3489872), Melanie Christine Föll (10160100), Matthias Fahrner (4917133), Maria A. Doyle (8791799), Beatriz Serrano-Solano (3739123), Anne Claire Fouilloux (14352194), Peter van Heusden (2861546), Wolfgang Maier (128051), Dave Clements (14041), Florian Heyl (5594924), Björn Grüning (3587165), Bérénice Batut (5377243)

مصطلحات موضوعية: Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, still rarely taught, become increasingly computational, adding increased support, recent technological advances, contributors growing rapidly, basic computational skills, teaching !, supporting researchers directly, div >< p, galaxy training network, friendly galaxy framework, data analysis utilizing, galaxy training materials, galaxy training, data analysis, skills gap, recent years, training platform, training materials, researchers tasked, empower researchers, data analyses, powerful framework, driven framework, trainer lessons, scientific datasets, research studies

Relation: https://figshare.com/articles/figure/Statistics_about_training_events_organized_by_the_Galaxy_community_and_visits_of_the_GTN_website_over_years_/21843122

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010752.g001

المؤلفون: Saskia Hiltemann (4409881), Helena Rasche (6307673), Simon Gladman (147497), Hans-Rudolf Hotz (14352182), Delphine Larivière (9238692), Daniel Blankenberg (8997360), Pratik D. Jagtap (640691), Thomas Wollmann (14352185), Anthony Bretaudeau (116576), Nadia Goué (14352188), Timothy J. Griffin (39969), Coline Royaux (11202081), Yvan Le Bras (5564414), Subina Mehta (5721521), Anna Syme (14352191), Frederik Coppens (3191250), Bert Droesbeke (6385352), Nicola Soranzo (95104), Wendi Bacon (13170009), Fotis Psomopoulos (6895334), Cristóbal Gallardo-Alba (10797634), John Davis (3489872), Melanie Christine Föll (10160100), Matthias Fahrner (4917133), Maria A. Doyle (8791799), Beatriz Serrano-Solano (3739123), Anne Claire Fouilloux (14352194), Peter van Heusden (2861546), Wolfgang Maier (128051), Dave Clements (14041), Florian Heyl (5594924), Björn Grüning (3587165), Bérénice Batut (5377243)

مصطلحات موضوعية: Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, still rarely taught, become increasingly computational, adding increased support, recent technological advances, contributors growing rapidly, basic computational skills, teaching !, supporting researchers directly, div >< p, galaxy training network, friendly galaxy framework, data analysis utilizing, galaxy training materials, galaxy training, data analysis, skills gap, recent years, training platform, training materials, researchers tasked, empower researchers, data analyses, powerful framework, driven framework, trainer lessons, scientific datasets, research studies

Relation: https://figshare.com/articles/figure/Content_of_material_available_on_the_GTN_and_feedback_from_learners_/21843125

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010752.g002

المؤلفون: Saskia Hiltemann (4409881), Helena Rasche (6307673), Simon Gladman (147497), Hans-Rudolf Hotz (14352182), Delphine Larivière (9238692), Daniel Blankenberg (8997360), Pratik D. Jagtap (640691), Thomas Wollmann (14352185), Anthony Bretaudeau (116576), Nadia Goué (14352188), Timothy J. Griffin (39969), Coline Royaux (11202081), Yvan Le Bras (5564414), Subina Mehta (5721521), Anna Syme (14352191), Frederik Coppens (3191250), Bert Droesbeke (6385352), Nicola Soranzo (95104), Wendi Bacon (13170009), Fotis Psomopoulos (6895334), Cristóbal Gallardo-Alba (10797634), John Davis (3489872), Melanie Christine Föll (10160100), Matthias Fahrner (4917133), Maria A. Doyle (8791799), Beatriz Serrano-Solano (3739123), Anne Claire Fouilloux (14352194), Peter van Heusden (2861546), Wolfgang Maier (128051), Dave Clements (14041), Florian Heyl (5594924), Björn Grüning (3587165), Bérénice Batut (5377243)

مصطلحات موضوعية: Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, still rarely taught, become increasingly computational, adding increased support, recent technological advances, contributors growing rapidly, basic computational skills, teaching !, supporting researchers directly, div >< p, galaxy training network, friendly galaxy framework, data analysis utilizing, galaxy training materials, galaxy training, data analysis, skills gap, recent years, training platform, training materials, researchers tasked, empower researchers, data analyses, powerful framework, driven framework, trainer lessons, scientific datasets, research studies

Relation: https://figshare.com/articles/dataset/Implementation_of_the_Ten_simple_rules_for_making_training_materials_FAIR_16_in_the_GTN_/21843134

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010752.t001

المؤلفون: Saskia Hiltemann (4409881), Helena Rasche (6307673), Simon Gladman (147497), Hans-Rudolf Hotz (14352182), Delphine Larivière (9238692), Daniel Blankenberg (8997360), Pratik D. Jagtap (640691), Thomas Wollmann (14352185), Anthony Bretaudeau (116576), Nadia Goué (14352188), Timothy J. Griffin (39969), Coline Royaux (11202081), Yvan Le Bras (5564414), Subina Mehta (5721521), Anna Syme (14352191), Frederik Coppens (3191250), Bert Droesbeke (6385352), Nicola Soranzo (95104), Wendi Bacon (13170009), Fotis Psomopoulos (6895334), Cristóbal Gallardo-Alba (10797634), John Davis (3489872), Melanie Christine Föll (10160100), Matthias Fahrner (4917133), Maria A. Doyle (8791799), Beatriz Serrano-Solano (3739123), Anne Claire Fouilloux (14352194), Peter van Heusden (2861546), Wolfgang Maier (128051), Dave Clements (14041), Florian Heyl (5594924), Björn Grüning (3587165), Bérénice Batut (5377243)

مصطلحات موضوعية: Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, still rarely taught, become increasingly computational, adding increased support, recent technological advances, contributors growing rapidly, basic computational skills, teaching !, supporting researchers directly, div >< p, galaxy training network, friendly galaxy framework, data analysis utilizing, galaxy training materials, galaxy training, data analysis, skills gap, recent years, training platform, training materials, researchers tasked, empower researchers, data analyses, powerful framework, driven framework, trainer lessons, scientific datasets, research studies

Relation: https://figshare.com/articles/figure/Structure_of_a_GTN_tutorial_and_its_features_/21843128

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010752.g003

المؤلفون: Saskia Hiltemann (4409881), Helena Rasche (6307673), Simon Gladman (147497), Hans-Rudolf Hotz (14352182), Delphine Larivière (9238692), Daniel Blankenberg (8997360), Pratik D. Jagtap (640691), Thomas Wollmann (14352185), Anthony Bretaudeau (116576), Nadia Goué (14352188), Timothy J. Griffin (39969), Coline Royaux (11202081), Yvan Le Bras (5564414), Subina Mehta (5721521), Anna Syme (14352191), Frederik Coppens (3191250), Bert Droesbeke (6385352), Nicola Soranzo (95104), Wendi Bacon (13170009), Fotis Psomopoulos (6895334), Cristóbal Gallardo-Alba (10797634), John Davis (3489872), Melanie Christine Föll (10160100), Matthias Fahrner (4917133), Maria A. Doyle (8791799), Beatriz Serrano-Solano (3739123), Anne Claire Fouilloux (14352194), Peter van Heusden (2861546), Wolfgang Maier (128051), Dave Clements (14041), Florian Heyl (5594924), Björn Grüning (3587165), Bérénice Batut (5377243)

مصطلحات موضوعية: Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, still rarely taught, become increasingly computational, adding increased support, recent technological advances, contributors growing rapidly, basic computational skills, teaching !, supporting researchers directly, div >< p, galaxy training network, friendly galaxy framework, data analysis utilizing, galaxy training materials, galaxy training, data analysis, skills gap, recent years, training platform, training materials, researchers tasked, empower researchers, data analyses, powerful framework, driven framework, trainer lessons, scientific datasets, research studies

Relation: https://figshare.com/articles/figure/Typical_process_to_create_a_new_tutorial_/21843131

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010752.g004

المؤلفون: Saskia Hiltemann (4409881), Helena Rasche (6307673), Simon Gladman (147497), Hans-Rudolf Hotz (14352182), Delphine Larivière (9238692), Daniel Blankenberg (8997360), Pratik D. Jagtap (640691), Thomas Wollmann (14352185), Anthony Bretaudeau (116576), Nadia Goué (14352188), Timothy J. Griffin (39969), Coline Royaux (11202081), Yvan Le Bras (5564414), Subina Mehta (5721521), Anna Syme (14352191), Frederik Coppens (3191250), Bert Droesbeke (6385352), Nicola Soranzo (95104), Wendi Bacon (13170009), Fotis Psomopoulos (6895334), Cristóbal Gallardo-Alba (10797634), John Davis (3489872), Melanie Christine Föll (10160100), Matthias Fahrner (4917133), Maria A. Doyle (8791799), Beatriz Serrano-Solano (3739123), Anne Claire Fouilloux (14352194), Peter van Heusden (2861546), Wolfgang Maier (128051), Dave Clements (14041), Florian Heyl (5594924), Björn Grüning (3587165), Bérénice Batut (5377243)

مصطلحات موضوعية: Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, still rarely taught, become increasingly computational, adding increased support, recent technological advances, contributors growing rapidly, basic computational skills, teaching !, supporting researchers directly, div >< p, galaxy training network, friendly galaxy framework, data analysis utilizing, galaxy training materials, galaxy training, data analysis, skills gap, recent years, training platform, training materials, researchers tasked, empower researchers, data analyses, powerful framework, driven framework, trainer lessons, scientific datasets, research studies

Relation: https://figshare.com/articles/dataset/Implementation_of_the_Ten_simple_rules_for_collaborative_lesson_development_29_in_the_GTN_/21843137

الاتاحة: https://doi.org/10.1371/journal.pcbi.1010752.t002

المؤلفون: Florian Heyl

مصطلحات موضوعية: CUT&RUN, Galaxy

Relation: https://doi.org/10.5281/zenodo.6823058; https://doi.org/10.5281/zenodo.6823059; oai:zenodo.org:6823059

الاتاحة: https://doi.org/10.5281/zenodo.6823059

المؤلفون: Claudia Steglich, Florian Heyl, Said N. Rogh, Thomas Wallner, Wolfgang R. Hess, Ute A. Hoffmann, Rolf Backofen, Annegret Wilde

مصطلحات موضوعية: Riboswitch, Biochemistry, Chemistry, Operon, RNase P, Ribonuclease E, Mutant, Transfer RNA, RNA, Cleavage (embryo)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::eae900f6952042d25cd60ea4096a1649
https://doi.org/10.1101/2021.07.27.453982

المؤلفون: Florian Heyl, Rolf Backofen

المصدر: GigaScience

مصطلحات موضوعية: CLIP-Seq, Computer science, AcademicSubjects/SCI02254, Sequencing data, data analysis, peak shape clustering, Set (abstract data type), Technical Note, Immunoprecipitation, Binding site, SLBP, Binding Sites, biology, business.industry, Sequence Analysis, RNA, High-Throughput Nucleotide Sequencing, Pattern recognition, Task (computing), Histone, Filter (video), biology.protein, AcademicSubjects/SCI00960, RNA, Chromatin Immunoprecipitation Sequencing, Artificial intelligence, Sequence motif, business, protein, Peak calling, Chromatin immunoprecipitation

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1b087d61f45ec4bb4f8718e5e69c05d
http://europepmc.org/articles/PMC8212874

المؤلفون: Michael, Uhl, Van Dinh, Tran, Florian, Heyl, Rolf, Backofen

المصدر: GigaScience

مصطلحات موضوعية: Binding Sites, CLIP-seq, RBP binding site prediction, AcademicSubjects/SCI02254, RNA-Binding Proteins, deep learning, eCLIP, Technical Note, RNA, AcademicSubjects/SCI00960, recurrent neural networks, Neural Networks, Computer, visualization, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::62cb5a59c7d9e69ab87b74d4bcf8ac5d
https://pubmed.ncbi.nlm.nih.gov/34406415

المؤلفون: Florian Heyl, Bruno Huettel, Wolfgang R. Hess, Anzhela Migur, Janina Fuss, George W. Owttrim, Claudia Steglich, Afshan Srikumar, Rolf Backofen, Jogadhenu S. S. Prakash, Richard Reinhardt

المصدر: Journal of experimental botany.

مصطلحات موضوعية: 0106 biological sciences, Regulation of gene expression, 0303 health sciences, Messenger RNA, DEAD box, Physiology, Synechocystis, RNA, Plant Science, Biology, biology.organism_classification, 01 natural sciences, RNA Helicase A, Interactome, Cell biology, 03 medical and health sciences, Gene family, 030304 developmental biology, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1eb0aace744e7a3e73395263618e3bb6
https://pubmed.ncbi.nlm.nih.gov/34499142

المؤلفون: Michael Uhl, Florian Heyl, Rolf Backofen, Daniel Maticzka

المصدر: GigaScience

مصطلحات موضوعية: Data Analysis, Web server, Clip seq, CLIP-Seq, Computer science, AcademicSubjects/SCI02254, Health Informatics, Review, computer.software_genre, Nucleotide level, 03 medical and health sciences, 0302 clinical medicine, 030304 developmental biology, 0303 health sciences, Sequence, Sequence Analysis, RNA, High-Throughput Nucleotide Sequencing, RNA-Binding Proteins, Pipeline (software), Computer Science Applications, Peak detection, Galaxy, AcademicSubjects/SCI00960, RNA, Chromatin Immunoprecipitation Sequencing, Data mining, protein, ICLIP, computer, Peak calling, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97280c4662e8489126e6ae8459c11af2
http://europepmc.org/articles/PMC7657819

المؤلفون: Ibrahim Avsar Ilik, Gerd Walz, Barbara Müller, Florian Heyl, Rolf Backofen, Asifa Akhtar, Toma A. Yakulov, Daniel Maticzka, Christina Engel, Luisa Estrada Mallarino, Jörn Dengjel

المصدر: Scientific Reports, Vol 10, Iss 1, Pp 1-14 (2020)
Scientific Reports

مصطلحات موضوعية: 0301 basic medicine, Cell biology, Molecular biology, Hippuristanol, DNA damage, lcsh:Medicine, Pathogenesis, Biology, Kidney, Ciliopathies, Article, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, Stress granule, Stress, Physiological, Nephronophthisis, Developmental biology, Genetics, medicine, Humans, Cilia, lcsh:Science, Gene, Polycystic Kidney Diseases, Multidisciplinary, Cilium, lcsh:R, Nuclear Proteins, RNA-Binding Proteins, RNA, Kidney Diseases, Cystic, medicine.disease, Ankyrin Repeat, Sterols, HEK293 Cells, 030104 developmental biology, chemistry, 030220 oncology & carcinogenesis, Mutation, lcsh:Q, Carrier Proteins, HeLa Cells, Transcription Factors

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c21e2df8eeac49af220f81ccefb835f
https://doi.org/10.1038/s41598-020-72905-8

المؤلفون: Sarah L. Svensson, Florian Eggenhofer, Florian Heyl, Kathrin Froschauer, Cynthia M. Sharma, Rick Gelhausen, Lydia Hadjeras, Rolf Backofen

المصدر: Bioinformatics

مصطلحات موضوعية: Statistics and Probability, animal structures, AcademicSubjects/SCI01060, Computer science, In silico, Cell, Computational biology, Biochemistry, Deep sequencing, Translatome, 03 medical and health sciences, 0302 clinical medicine, medicine, Profiling (information science), Ribosome profiling, Molecular Biology, 030304 developmental biology, chemistry.chemical_classification, 0303 health sciences, cDNA library, Chemistry, Bacterial ribosome, RNA, Applications Notes, Computer Science Applications, Amino acid, High throughput analysis, Computational Mathematics, Open reading frame, medicine.anatomical_structure, Computational Theory and Mathematics, Sequence Analysis, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e76023410438f12af809099ac0a56095
https://doi.org/10.1101/2020.04.27.046219

المؤلفون: Florian Heyl, Michael Uhl, Van Dinh Tran, Rolf Backofen

مصطلحات موضوعية: Variable (computer science), Base pair, Graph neural networks, Computer science, Encoding (memory), Graph (abstract data type), RNA-binding protein, Computational biology, Binding site, Convolutional neural network

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::9909f8ae247cb8878967924b2d03c3f6
https://doi.org/10.1101/850024