المؤلفون: Moore, Jarrod, Hekman, Ryan, Blum, Benjamin C, Lawton, Matthew, Lehoux, Sylvain, Stachler, Matthew, Pleskow, Douglas, Sawhney, Mandeep S, Cummings, Richard D, Emili, Andrew, Qureshi, Alia

المصدر: Genes. 13(7)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Rare Diseases, Human Genome, Clinical Research, Digestive Diseases, Genetics, Cancer, 2.1 Biological and endogenous factors, Aetiology, Good Health and Well Being, Barrett Esophagus, Disease Progression, Feasibility Studies, Humans, Pilot Projects, Proteomics, pre-cancerous lesion, biopsy, systems biology, mass spectrometry, disease signature

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2gz6b33x
https://escholarship.org/content/qt2gz6b33x/qt2gz6b33x.pdf

المؤلفون: Goldstein, Stanley I., Fan, Alice C., Wang, Zihao, Naineni, Sai K., Lengqvist, Johan, Chernobrovkin, Alexey, Garcia-Gutierrez, Steve B., Cencic, Regina, Patel, Kesha, Huang, Sidong, Brown, Lauren E., Emili, Andrew, Porco, John A.

جغرافية الموضوع: United States

Relation: bioRxiv; https://www.ncbi.nlm.nih.gov/pubmed/38659867; http://dx.doi.org/10.1101/2024.04.19.590252; S.I. Goldstein, A.C. Fan, Z. Wang, S.K. Naineni, J. Lengqvist, A. Chernobrovkin, S.B. Garcia-Gutierrez, R. Cencic, K. Patel, S. Huang, L.E. Brown, A. Emili, J.A. Porco. 2024. "Proteomic Discovery of RNA-Protein Molecular Clamps Using a Thermal Shift Assay with ATP and RNA (TSAR)." bioRxiv. https://doi.org/10.1101/2024.04.19.590252; https://hdl.handle.net/2144/48987; 0000-0003-2271-7267 (Goldstein, Stanley I); 916353

الاتاحة: https://hdl.handle.net/2144/48987
https://www.ncbi.nlm.nih.gov/pubmed/38659867
https://doi.org/10.1101/2024.04.19.590252

المؤلفون: Swapna, Lakshmipuram S., Stevens, Grant C., Sardinha-Silva, Aline, Hu, Lucas Zhongming, Brand, Verena, Fusca, Daniel D., Wan, Cuihong, Xiong, Xuejian, Boyle, Jon P., Grigg, Michael E., Emili, Andrew, Parkinson, John

المساهمون: Reese, Michael L., Hospital for Sick Children, National Institutes of Health, Canadian Institutes for Health Research, Division of Intramural Research, National Institute of Allergy and Infectious Diseases

المصدر: PLOS Computational Biology ; volume 20, issue 6, page e1012208 ; ISSN 1553-7358

الاتاحة: http://dx.doi.org/10.1371/journal.pcbi.1012208
https://dx.plos.org/10.1371/journal.pcbi.1012208

المؤلفون: Lin, Weiwei, Mousavi, Fatemeh, Blum, Benjamin C., Heckendorf, Christian F, Moore, Jarrod, Lampl, Noah, McComb, Mark, Kotelnikov, Sergei, Yin, Wenqing, Rabhi, Nabil, Layne, Matthew D., Kozakov, Dima, Chitalia, Vipul C., Emili, Andrew

المصدر: Frontiers in Pharmacology ; volume 15 ; ISSN 1663-9812

الاتاحة: http://dx.doi.org/10.3389/fphar.2024.1376058
https://www.frontiersin.org/articles/10.3389/fphar.2024.1376058/full

المؤلفون: Youssef, Ahmed, Paul, Indranil, Crovella, Mark, Emili, Andrew

المساهمون: Boston University, NIH

المصدر: Cell Reports Methods ; volume 4, issue 3, page 100729 ; ISSN 2667-2375

الاتاحة: http://dx.doi.org/10.1016/j.crmeth.2024.100729
https://api.elsevier.com/content/article/PII:S2667237524000523?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2667237524000523?httpAccept=text/plain

المؤلفون: Dost, Antonella FM, Moye, Aaron L, Vedaie, Marall, Tran, Linh M, Fung, Eileen, Heinze, Dar, Villacorta-Martin, Carlos, Huang, Jessie, Hekman, Ryan, Kwan, Julian H, Blum, Benjamin C, Louie, Sharon M, Rowbotham, Samuel P, Sainz de Aja, Julio, Piper, Mary E, Bhetariya, Preetida J, Bronson, Roderick T, Emili, Andrew, Mostoslavsky, Gustavo, Fishbein, Gregory A, Wallace, William D, Krysan, Kostyantyn, Dubinett, Steven M, Yanagawa, Jane, Kotton, Darrell N, Kim, Carla F

المصدر: Cell Stem Cell. 27(4)

مصطلحات موضوعية: Biomedical and Clinical Sciences, Oncology and Carcinogenesis, Genetics, Stem Cell Research - Nonembryonic - Non-Human, Stem Cell Research - Induced Pluripotent Stem Cell - Human, Rare Diseases, Stem Cell Research - Induced Pluripotent Stem Cell, Lung Cancer, Cancer, Stem Cell Research, Stem Cell Research - Nonembryonic - Human, Lung, Biotechnology, 2.1 Biological and endogenous factors, Animals, Humans, Induced Pluripotent Stem Cells, Mice, Organoids, Proteomics, Proto-Oncogene Proteins p21(ras), KRAS, alveolar, developmental programs, early-stage lung cancer, iPSC, loss of differentiation, organoid, single-cell RNA sequencing, stage IA lung adenocarcinoma, tumor progression, Biological Sciences, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/59d4j07r
https://escholarship.org/content/qt59d4j07r/qt59d4j07r.pdf

المؤلفون: Bandyadka, Shruthi, Lebo, Diane P V, Mondragon, Albert A, Serizier, Sandy B, Kwan, Julian, Peterson, Jeanne S, Chasse, Alexandra Y, Jenkins, Victoria, Calikyan, Anoush, Ortega, Anthony J, Campbell, Joshua D, Emili, Andrew, McCall, Kimberly

المصدر: PLoS Genet ; ISSN:1553-7404 ; Volume:21 ; Issue:1

Relation: https://doi.org/10.1371/journal.pgen.1011220; https://pubmed.ncbi.nlm.nih.gov/39752622

الاتاحة: https://doi.org/10.1371/journal.pgen.1011220
https://pubmed.ncbi.nlm.nih.gov/39752622

المؤلفون: Ruan, Qiu T, Yazdani, Neema, Blum, Benjamin C, Beierle, Jacob A, Lin, Weiwei, Coelho, Michal A, Fultz, Elissa K, Healy, Aidan F, Shahin, John R, Kandola, Amarpreet K, Luttik, Kimberly P, Zheng, Karen, Smith, Nathaniel J, Cheung, Justin, Mortazavi, Farzad, Apicco, Daniel J, Ragu Varman, Durairaj, Ramamoorthy, Sammanda, Ash, Peter EA, Rosene, Douglas L, Emili, Andrew, Wolozin, Benjamin, Szumlinski, Karen K, Bryant, Camron D

المصدر: Journal of Neuroscience. 40(1)

مصطلحات موضوعية: Pharmacology and Pharmaceutical Sciences, Biomedical and Clinical Sciences, Drug Abuse (NIDA only), Substance Misuse, Neurosciences, Basic Behavioral and Social Science, Brain Disorders, Genetics, Behavioral and Social Science, Methamphetamine, 1.1 Normal biological development and functioning, Underpinning research, Good Health and Well Being, Animals, Anxiety, Corpus Striatum, Dopamine, Dopaminergic Neurons, Exons, Exploratory Behavior, Female, Heterogeneous-Nuclear Ribonucleoprotein Group F-H, Heterogeneous-Nuclear Ribonucleoproteins, Heterozygote, Male, Mesencephalon, Mice, Mice, Inbred C57BL, Mitochondria, Mitochondrial Proteins, Mutation, Reflex, Startle, Reinforcement, Psychology, Reward, Rotarod Performance Test, Substance-Related Disorders, Synaptosomes, addiction, Hnrnph1, methamphetamine, mitochondria, psychostimulants, RNA binding protein, Medical and Health Sciences, Psychology and Cognitive Sciences, Neurology & Neurosurgery

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7vs8g400

المؤلفون: Rahmati, Saman¹ (AUTHOR) rahmatis@ohsu.edu, Emili, Andrew¹ (AUTHOR) emili@ohsu.edu

المصدر: Cancers. Jan2025, Vol. 17 Issue 2, p179. 23p.

مصطلحات موضوعية: *PROTEIN metabolism, *CELL physiology, *CELLULAR signal transduction, *TUMOR markers, *CELL lines, *PROTEOMICS, *MASS spectrometry, *CELL receptors, *PRECIPITIN tests

المؤلفون: Lawton, Matthew L., Inge, Melissa M., Blum, Benjamin C., Smith-Mahoney, Erika L., Bolzan, Dante, Lin, Weiwei, McConney, Christina, Porter, Jacob, Moore, Jarrod, Youssef, Ahmed, Tharani, Yashasvi, Varelas, Xaralabos, Denis, Gerald V., Wong, Wilson W., Padhorny, Dzmitry, Kozakov, Dima, Siggers, Trevor, Wuchty, Stefan, Snyder-Cappione, Jennifer, Emili, Andrew

المصدر: PLoS Biology; 12/17/2024, Vol. 22 Issue 12, p1-44, 44p

مصطلحات موضوعية: CELL receptors, T-cell exhaustion, CYTOTOXIC T cells, METABOLIC reprogramming, HISTONE acetyltransferase

المؤلفون: Rodionova, Irina A, Goodacre, Norman, Babu, Mohan, Emili, Andrew, Uetz, Peter, Saier, Milton H

المصدر: Journal of bacteriology. 200(5)

مصطلحات موضوعية: Escherichia coli, Nitrogen, N-Acetylneuraminic Acid, Aldose-Ketose Isomerases, Racemases and Epimerases, Hexosamines, Glucosamine, Acetylglucosamine, Glucose-6-Phosphate, Escherichia coli Proteins, Transcription Factors, Protein Interaction Mapping, Signal Transduction, Gene Expression Regulation, Bacterial, Phosphorylation, PII Nitrogen Regulatory Proteins, N-acetylglucosamine 6-phosphate epimerase, NagB, NanE, PII, allosteric regulation, glucosamine 6-phosphate deaminase/isomerase, nitrogen regulator, protein-protein interactions, signal transduction, Aetiology, 2.2 Factors relating to the physical environment, Infection, Biological Sciences, Agricultural and Veterinary Sciences, Medical and Health Sciences, Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7113h4c2

المؤلفون: Kewalramani, Neal, Emili, Andrew, Crovella, Mark

مصطلحات موضوعية: Biological sciences, Information and computing sciences, Medical and health sciences, Biochemistry & molecular biology, Biomedical and clinical sciences

Relation: Proteomics; http://dx.doi.org/10.1002/pmic.202200292; N. Kewalramani, A. Emili, M. Crovella. 2023. "State‐of‐the‐art computational methods to predict protein–protein interactions with high accuracy and coverage" Proteomics, Volume 23, Issue 21-22. https://doi.org/10.1002/pmic.202200292; https://hdl.handle.net/2144/48140; 0000-0001-8995-246X (Emili, Andrew); 0000-0002-5005-7019 (Crovella, Mark); 872511

الاتاحة: https://hdl.handle.net/2144/48140
https://doi.org/10.1002/pmic.202200292

المؤلفون: Youssef, Ahmed, Bian, Fei, Paniikov, Nicolai S., Crovella, Mark, Emili, Andrew

مصطلحات موضوعية: Biological sciences, Information and computing sciences, Medical and health sciences, Biochemistry & molecular biology, Biomedical and clinical sciences

Relation: Proteomics; http://dx.doi.org/10.1002/pmic.202200404; A. Youssef, F. Bian, N.S. Paniikov, M. Crovella, A. Emili. 2023. "Dynamic remodeling of Escherichia coli interactome in response to environmental perturbations" Proteomics, Volume 23, Issue 21-22. https://doi.org/10.1002/pmic.202200404; https://hdl.handle.net/2144/48141; 0000-0001-6100-7503 (Youssef, Ahmed); 0000-0002-5005-7019 (Crovella, Mark); 0000-0001-8995-246X (Emili, Andrew); 872514

الاتاحة: https://hdl.handle.net/2144/48141
https://doi.org/10.1002/pmic.202200404

المؤلفون: Deehan, Mark, Lin, Weiwei, Blum, Benjamin, Emili, Andrew, Frydman, Horacio

المساهمون: Teixeira, Luis, McFall-Ngai, Margaret J.

مصطلحات موضوعية: Wolbachia, Autophagy, Effector functions, Host-pathogen interactions, Innate immunity, Symbiosis, Microbiology, Biochemistry and cell biology, Medical microbiology, Animals, Autophagy-related protein-1 homolog, Bacterial proteins, Cytoplasm, Cytosol, Drosophila proteins, Drosophila melanogaster, Female, Gene knockdown techniques, Genes, bacterial, Immunity, innate, Male, Reproduction

جغرافية الموضوع: United States

وصف الملف: e02205-e02220; Electronic

Relation: mBio; https://www.ncbi.nlm.nih.gov/pubmed/33436431; http://dx.doi.org/10.1128/mbio.02205-20; M. Deehan, W. Lin, B. Blum, A. Emili, H. Frydman. 2021. "Intracellular Density of Wolbachia Is Mediated by Host Autophagy and the Bacterial Cytoplasmic Incompatibility Gene cifB in a Cell Type-Dependent Manner in Drosophila melanogaster." mBio, Volume 12, Issue 1, pp.e02205-e02220. https://doi.org/10.1128/mBio.02205-20; https://hdl.handle.net/2144/47072; 0000-0002-6510-9918 (Deehan, Mark); 0000-0001-8995-246X (Emili, Andrew); 0000-0003-0191-7948 (Frydman, Horacio); 586295

الاتاحة: https://hdl.handle.net/2144/47072
https://www.ncbi.nlm.nih.gov/pubmed/33436431
https://doi.org/10.1128/mbio.02205-20

المؤلفون: Liao, Sheng-You, Rudoy, Dmytro, Frank, Sander B., Phan, Luan T., Klezovitch, Olga, Kwan, Julian, Coleman, Ilsa, Haffner, Michael C., Li, Dapei, Nelson, Peter S., Emili, Andrew, Vasioukhin, Valeri

المساهمون: U.S. Department of Health & Human Services | NIH | National Cancer Institute, U.S. Department of Defense

المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-023-43245-8
https://www.nature.com/articles/s41467-023-43245-8.pdf
https://www.nature.com/articles/s41467-023-43245-8

المؤلفون: Paul, Indranil, Bolzan, Dante, Youssef, Ahmed, Gagnon, Keith A., Hook, Heather, Karemore, Gopal, Oliphant, Michael U. J., Lin, Weiwei, Liu, Qian, Phanse, Sadhna, White, Carl, Padhorny, Dzmitry, Kotelnikov, Sergei, Chen, Christopher S., Hu, Pingzhao, Denis, Gerald V., Kozakov, Dima, Raught, Brian, Siggers, Trevor, Wuchty, Stefan, Muthuswamy, Senthil K., Emili, Andrew

المساهمون: Division of Cancer Prevention, National Cancer Institute

المصدر: Nature Communications ; volume 14, issue 1 ; ISSN 2041-1723

الاتاحة: http://dx.doi.org/10.1038/s41467-023-36122-x
https://www.nature.com/articles/s41467-023-36122-x.pdf
https://www.nature.com/articles/s41467-023-36122-x

المؤلفون: Lin, Weiwei, Mousavi, Fatemeh, Blum, Benjamin C., Heckendorf, Christian F., Moore, Jarrod, Lampl, Noah, McComb, Mark, Kotelnikov, Sergei, Yin, Wenqing, Rabhi, Nabil, Layne, Matthew D., Kozakov, Dima, Chitalia, Vipul C., Emili, Andrew

المساهمون: Canadian Institutes of Health Research, Boston University

المصدر: Frontiers in Pharmacology ; volume 14 ; ISSN 1663-9812

الاتاحة: http://dx.doi.org/10.3389/fphar.2023.1243505
https://www.frontiersin.org/articles/10.3389/fphar.2023.1243505/full

المؤلفون: Park, Jinyoung, Wu, Yanwei, Shao, Wei, Gendron, Tania F., van der Spek, Sophie J.F., Sultanakhmetov, Grigorii, Basu, Avik, Castellanos Otero, Paula, Jones, Caroline J., Jansen-West, Karen, Daughrity, Lillian M., Phanse, Sadhna, del Rosso, Giulia, Tong, Jimei, Castanedes-Casey, Monica, Jiang, Lulu, Libera, Jenna, Oskarsson, Björn, Dickson, Dennis W., Sanders, David W., Brangwynne, Clifford P., Emili, Andrew, Wolozin, Benjamin, Petrucelli, Leonard, Zhang, Yong-Jie

المساهمون: Mayo Clinic, Mayo Foundation, Robert Packard Center for ALS Research, Johns Hopkins University, Target ALS, National Institutes of Health

المصدر: Cell Reports ; volume 42, issue 8, page 112822 ; ISSN 2211-1247

الاتاحة: http://dx.doi.org/10.1016/j.celrep.2023.112822
https://api.elsevier.com/content/article/PII:S2211124723008331?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2211124723008331?httpAccept=text/plain

المؤلفون: English, Justin, Orofino, Joseph, Cederquist, Carly T., Paul, Indranil, Li, Hao, Auwerx, Johan, Emili, Andrew, Belkina, Anna, Cardamone, Dafne, Perissi, Valentina

المصدر: Molecular Metabolism ; volume 69, page 101682 ; ISSN 2212-8778

الاتاحة: http://dx.doi.org/10.1016/j.molmet.2023.101682
https://api.elsevier.com/content/article/PII:S2212877823000169?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2212877823000169?httpAccept=text/plain

المؤلفون: Subramaniam, Saravanan, Hekman, Ryan Matthew, Jayaraman, Archana, O’Connell, Aoife Kateri, Montanaro, Paige, Kenney, Devin, Ericsson, Maria, Walachowski, Sarah, Blum, Benjamin, Ravid, Katya, Crossland, Nicholas A., Douam, Florian, Emili, Andrew, Bosmann, Markus

المصدر: Research and Practice in Thrombosis and Haemostasis ; volume 7, page 100215 ; ISSN 2475-0379

الاتاحة: http://dx.doi.org/10.1016/j.rpth.2023.100215
https://api.elsevier.com/content/article/PII:S2475037923004041?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2475037923004041?httpAccept=text/plain