المؤلفون: Osman Salih, Matthew Hartley, Sriram Somasundharam, Simone Weyand, Paul K. Korir, Andrii Iudin, Gerard J. Kleywegt, Ugis Sarkans, Ardan Patwardhan

المصدر: F1000Research, Vol 12 (2024)

مصطلحات موضوعية: Organising data, public archiving, data deposition, open data, bioimaging, EMPIAR, eng, Medicine, Science

وصف الملف: electronic resource

Relation: https://f1000research.com/articles/12-1391/v2; https://doaj.org/toc/2046-1402

URL الوصول: https://doaj.org/article/8fb3ff8fceb9486ca7aeb5b1d8c8dae4

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/journal_contribution/Computation_time_for_each_processing_step_/16454274

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.s001

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/journal_contribution/Processing_scripts_/16454283

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.s004

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/journal_contribution/Overview_of_all_files_/16454277

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.s002

المؤلفون: Burt, Alister

المساهمون: Tegunov, Dimitry

مصطلحات موضوعية: cryo-ET, EMPIAR, image analysis, image processing, Warp, WarpTools

Relation: https://doi.org/10.5281/zenodo.11398167; https://doi.org/10.5281/zenodo.11398168; oai:zenodo.org:11398168

الاتاحة: https://doi.org/10.5281/zenodo.11398168

المؤلفون: Ardan Patwardhan, Robert Brandt, Sarah J Butcher, Lucy Collinson, David Gault, Kay Grünewald, Corey Hecksel, Juha T Huiskonen, Andrii Iudin, Martin L Jones, Paul K Korir, Abraham J Koster, Ingvar Lagerstedt, Catherine L Lawson, David Mastronarde, Matthew McCormick, Helen Parkinson, Peter B Rosenthal, Stephan Saalfeld, Helen R Saibil, Sirarat Sarntivijai, Irene Solanes Valero, Sriram Subramaniam, Jason R Swedlow, Ilinca Tudose, Martyn Winn, Gerard J Kleywegt

المصدر: eLife, Vol 6 (2017)

مصطلحات موضوعية: electron microscopy, tomography, segmentation, ontology, emdb, empiar, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/25835; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/894e26f1fe364e90b4d2256c2a6eedf1

المؤلفون: Korir, Paul Kibet, Iudin, Andrii, Somasundharam, Sriram, Weyand, Simone, Salih, Osman, Hartley, Matthew, Sarkans, Ugis, Patwardhan, Ardan, Kleywegt, Gerard J

مصطلحات موضوعية: Organising data, public archiving, data deposition, open data, bioimaging, EMPIAR, BioImage Archive, BioStudies

Relation: https://doi.org/10.5281/zenodo.7807540; https://doi.org/10.5281/zenodo.7807541; oai:zenodo.org:7807541

الاتاحة: https://doi.org/10.5281/zenodo.7807541

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/The_number_of_STA_reconstructions_with_different_reported_resolution_values_in_the_EMDB_/16454242

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.s001

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/_i_autoalign_dynamo_i_and_i_dynamo2m_i_enable_a_powerful_flexible_framework_for_ab_initio_and_geometrical_approaches_to_multi-particle_refinement_of_cryo-ET_data_/16454254

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.g003

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/The_source_code_for_generating_the_scene_depicted_in_Fig_2_combining_starfile_and_eulerangles_with_existing_tools_in_the_scientific_Python_ecosystem_/16454245

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.s002

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/Cryo-ET_data_processing_can_be_roughly_divided_into_3_blocks_/16454248

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.g001

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/Modular_tools_designed_to_integrate_with_the_scientific_Python_ecosystem_simplify_the_creation_of_custom_visualisations_in_i_napari_i_/16454251

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.g002

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/A_nominally_11-_reconstruction_of_the_in_situ_chemosensory_array_from_17_484_particles_in_48_tomograms_of_i_E_i_i_coli_i_minicells_/16454263

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.g006

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/Geometrical_approaches_to_STA_/16454257

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.g004

المؤلفون: Alister Burt (6242912), Lorenzo Gaifas (11337787), Tom Dendooven (3341570), Irina Gutsche (207422)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, dataset, framework, 3.4-Å, cryo-electron tomography Cryo-elect., HIV, approach, STA, refinement, VLP, EMPIAR -10164, cryo-ET, Dynamo software package

Relation: https://figshare.com/articles/figure/A_nominally_3_4-_reconstruction_of_the_HIV-1_CA-SP1_hexamer_from_19_810_particles_in_5_tilt_series_of_i_EMPIAR-10164_i_/16454260

الاتاحة: https://doi.org/10.1371/journal.pbio.3001319.g005

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/figure/Oversampling_of_VLPs_and_average_/16454289

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.g002

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/figure/Flowchart_of_processing_scripts_/16454286

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.g001

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/figure/Resolution_estimation_and_final_average_/16454280

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.s003

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/figure/Illustration_of_2-step_subboxing_for_particle_picking_/16454298

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.g005

المؤلفون: Stefano Scaramuzza (2619289), Daniel Castaño-Díez (462429)

مصطلحات موضوعية: Biochemistry, Biotechnology, Space Science, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, virus-like particles, lack, database entry 10164, aspect, design user-specific projects, electron tomography, HIV, STA, workflow, Electron Microscopy Public Image Ar., Dynamo, 3 D structure, pipeline, VLP, EMPIAR, image processing technique

Relation: https://figshare.com/articles/figure/Center_of_unit_cell_defined_in_Chimera_UCSF_/16454292

الاتاحة: https://doi.org/10.1371/journal.pbio.3001318.g003