المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/journal_contribution/List_of_primers_used_for_RT-qPCR_/15120791

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.s004

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/journal_contribution/List_of_primers_used_for_ChIP-qPCR_/15120794

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.s005

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/Validation_of_EBNA2_BS_CRISPR_knock_out_in_EREB2_5_and_BJAB_/15120785

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.s002

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/Estradiol_does_not_alter_MHC_II_expression_in_LCL_/15120782

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.s001

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/EBV_represses_transcription_and_chromatin_of_HLA_class_II_gene_cluster_/15120797

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g001

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/TIDE_analysis_of_CTCF_binding_site_CRISPR_knock_out_/15120788

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.s003

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/EBNA2_downregulates_the_expression_of_HLA-II_/15120800

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g002

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/EBNA2_reduces_HLA-II_cell_surface_expression_and_stimulation_of_allogenic_CD4_T_cells_/15120803

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g003

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/EBNA2_regulates_the_occupancy_of_CIITA_and_H3K27ac_at_HLA_II_region_/15120806

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g004

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/EBNA2_regulates_HLA-II_through_CIITA_/15120809

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g005

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/CRISPR_mutated_EBNA2_binding_site_alters_CIITA_and_HLA-II_gene_expression_/15120812

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g006

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/Chromatin_boundary_containing_CTCF_separates_CIITA_and_DEXI_gene_/15120818

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g008

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/EBNA2_activates_the_neighboring_DEXI_gene_/15120815

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g007

المؤلفون: Chenhe Su (10036087), Fang Lu (45632), Samantha S. Soldan (10036084), R. Jason Lamontagne (3712525), Hsin-Yao Tang (395357), Giorgia Napoletani (6458723), Paul J. Farrell (8452527), Italo Tempera (83276), Andrew V. Kossenkov (9167577), Paul M. Lieberman (9167583)

مصطلحات موضوعية: Medicine, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, EBNA 2 enhancer formation, EBNA 2, TAD, CIITA gene transcripts, activation mark H 3K, HLA class II gene transcription, HLA class II transcription, HLA class II gene expression, CIITA-DEXI, locus, HLA-II, DEXI attenuated CIITA transcription., EBNA 2 binding site, EBNA 2 down-regulation, CTCF binding site, factor EBNA 2, CRISPR, EBNA 2 site, EBV, dexamethasone inducible gene

Relation: https://figshare.com/articles/figure/Model_of_EBNA2_indirect_repression_of_HLA-II_genes_through_down-regulation_of_CIITA_using_mechanism_of_enhancer_compartment_competition_/15120821

الاتاحة: https://doi.org/10.1371/journal.ppat.1009834.g009