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1Academic Journal
المصدر: Denesyuk , A , Denessiouk , K , Johnson , M & Uversky , V 2024 , ' Structural Catalytic Core in Subtilisin-like Proteins and Its Comparison to Trypsin-like Serine Proteases and Alpha/Beta-Hydrolases ' , International Journal of Molecular Sciences , vol. 25 , no. 22 , 11858 , pp. 11858 . https://doi.org/10.3390/ijms252211858
مصطلحات موضوعية: alpha/beta-hydrolases, catalytic pentad, serine proteases, subtilisin-like
وصف الملف: application/pdf
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2Academic Journal
المصدر: Denesyuk , A , Denessiouk , K , Johnson , M & Uversky , V 2024 , ' Structural Catalytic Core of the Members of the Superfamily of Acid Proteases ' , Molecules , vol. 29 , no. 15 , 3451 . https://doi.org/10.3390/molecules29153451
مصطلحات موضوعية: Ddi1, Lpg0085, acid protease, active site, catalytic aspartate, pepsin, retropepsin
وصف الملف: application/pdf
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3Academic Journal
المصدر: Denessiouk , K , Denesyuk , A , Johnson , M & Uversky , V 2025 , ' Two groups and three classes of the conserved structural organization of nucleophile and non-canonical ElbowFlankOxy networks in different superfamily proteins ' , Journal of Biomolecular Structure and Dynamics , vol. 15 , pp. 1-16 . https://doi.org/10.1080/07391102.2024.2429798
مصطلحات موضوعية: superfamily, 3D structure, nucleophile elbow, oxyanion hole, flanking residue
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4Academic Journal
المؤلفون: Denesyuk, Alexandre, Permyakov, Sergei E., Permyakov, Eugene A., Johnson, Mark, Denessiouk, Konstantin, Uversky, Vladimir N.
المصدر: Denesyuk , A , Permyakov , S E , Permyakov , E A , Johnson , M , Denessiouk , K & Uversky , V N 2023 , ' Canonical structural-binding modes in the calmodulin-target protein complexes ' , Journal of Biomolecular Structure and Dynamics , vol. 41 , no. 16 , pp. 7582-7594 . https://doi.org/10.1080/07391102.2022.2123391
مصطلحات موضوعية: Calcium, EF-hand, calmodulin–target complex, structural motif, Ф-quatrefoil, ‘black’ and ‘grey’ clusters
وصف الملف: application/pdf
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5Academic Journal
المؤلفون: Denesyuk, Alexandre, Permyakov, Sergei E., Johnson, Mark S, Permyakov, Eugene A., Uversky, Vladimir N., Denessiouk, Konstantin
المصدر: Denesyuk , A , Permyakov , S E , Johnson , M S , Permyakov , E A , Uversky , V N & Denessiouk , K 2021 , ' Structural leitmotif and functional variations of the structural catalytic core in (chymo)trypsin-like serine/cysteine fold proteinases ' , International Journal of Biological Macromolecules , vol. 179 , pp. 601-609 . https://doi.org/10.1016/j.ijbiomac.2021.03.042
مصطلحات موضوعية: COVID 19, Catalytic tetrad, Trypsin-like, SARS-Cov-2, InFlames
وصف الملف: application/pdf
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6Academic Journal
المؤلفون: Denesyuk, Alexandre, Permyakov, Eugene A., Johnson, Mark S, Permyakov, Sergei E., Denessiouk, Konstantin, Uversky, Vladimir N.
المصدر: Denesyuk , A , Permyakov , E A , Johnson , M S , Permyakov , S E , Denessiouk , K & Uversky , V N 2021 , ' Structural and functional significance of the amino acid differences Val 35 Thr, Ser 46 Ala, Asn 65 Ser, and Ala 94 Ser in 3C-like proteinases from SARS-CoV-2 and SARS-CoV ' , International Journal of Biological Macromolecules , vol. 193 . https://doi.org/10.1016/j.ijbiomac.2021.11.043
مصطلحات موضوعية: Autolysis, COVID-19, Trypsin-like, InFlames
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7Academic Journal
المؤلفون: Denesyuk, Alexandre, Dimitriou, Polytimi, Johnson, Mark S, Nakayama, Toru, Denessiouk, Konstantin
المصدر: Denesyuk , A , Dimitriou , P , Johnson , M S , Nakayama , T & Denessiouk , K 2020 , ' The acid-base-nucleophile catalytic triad in ABH-fold enzymes is coordinated by a set of structural elements ' , PLoS ONE , vol. 15 , no. 2 , pp. – . https://doi.org/10.1371/journal.pone.0229376
مصطلحات موضوعية: InFlames
وصف الملف: application/pdf
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8Academic Journal
المؤلفون: Permyakova, ME, Permyakov, SE, Kazakov, AS, Denesyuk, Alexandre, Denessiouk, Konstantin, Uversky, VN, Permyakov, EA
المصدر: Permyakova , ME , Permyakov , SE , Kazakov , AS , Denesyuk , A , Denessiouk , K , Uversky , VN & Permyakov , EA 2019 , ' Analyzing the structural and functional roles of residues from the 'black' and 'gray' clusters of human S100P protein ' , Cell Calcium , vol. 80 , pp. 46–55 . https://doi.org/10.1016/j.ceca.2019.03.008
وصف الملف: application/pdf
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9Academic Journal
المؤلفون: Dimitriou, Polytimi, Denesyuk, Alexandre, Nakayama, T, Johnson, Mark S, Denessiouk, Konstantin
المصدر: Dimitriou , P , Denesyuk , A , Nakayama , T , Johnson , M S & Denessiouk , K 2019 , ' Distinctive structural motifs co-ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta-hydrolase fold enzymes ' , Protein Science , vol. 28 , no. 2 , pp. 344–364 . https://doi.org/10.1002/pro.3527
وصف الملف: application/pdf
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10Academic Journal
المؤلفون: Deryusheva, EI, Denesyuk, Alexandre, Denessiouk, Konstantin, Uversky, VN, Permyakov, SE, Unknown , Permyakov EA.
المصدر: Deryusheva , EI , Denesyuk , A , Denessiouk , K , Uversky , VN , Permyakov , SE & [Unknown] , P EA 2018 , ' On the relationship between the conserved 'black' and 'gray' structural clusters and intrinsic disorder in parvalbumins. ' , International Journal of Biological Macromolecules , vol. 120 , no. A , pp. 1055–1062 . https://doi.org/10.1016/j.ijbiomac.2018.08.183.
وصف الملف: application/pdf
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11Academic Journal
المؤلفون: Kazakov, AS, Mayorov, SA, Deryusheva, EI, Avkhacheva, NV, Denessiouk, Konstantin, Denesyuk, Alexandre, Rastrygina, VA, Permyakov, EA, Unknown , Permyakov SE.
المصدر: Kazakov , AS , Mayorov , SA , Deryusheva , EI , Avkhacheva , NV , Denessiouk , K , Denesyuk , A , Rastrygina , VA , Permyakov , EA & [Unknown] , P SE 2020 , ' Highly specific interaction of monomeric S100P protein with interferon beta ' , International Journal of Biological Macromolecules , vol. 143 , pp. 633–639 . https://doi.org/10.1016/j.ijbiomac.2019.12.039
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12Academic Journal
المؤلفون: Permyakov, SE, Denesyuk, Alexandre, Denessiouk, Konstantin, Permyakova, ME, Kazakov, AS, Ismailov, RG, Rastrygina, VA, Sokolov, AS, Unknown , Permyakov EA.
المصدر: Permyakov , SE , Denesyuk , A , Denessiouk , K , Permyakova , ME , Kazakov , AS , Ismailov , RG , Rastrygina , VA , Sokolov , AS & [Unknown] , P EA 2019 , ' Monomeric state of S100P protein: Experimental and molecular dynamics study ' , Cell Calcium , vol. 80 , pp. 152–159 . https://doi.org/10.1016/j.ceca.2019.04.008
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13Academic Journal
المؤلفون: Permyakov, SE, Vologzhannikova, AS, Nemashkalova, EL, Kazakov, AS, Denesyuk, Alexandre, Denessiouk, Konstantin, Baksheeva, VE, Zamyatnin, AA, Zernii, EY, Uversky, VN, Unknown , Permyakov EA.
المصدر: Permyakov , SE , Vologzhannikova , AS , Nemashkalova , EL , Kazakov , AS , Denesyuk , A , Denessiouk , K , Baksheeva , VE , Zamyatnin , AA , Zernii , EY , Uversky , VN & [Unknown] , P EA 2019 , ' Experimental Insight into the Structural and Functional Roles of the 'Black' and 'Gray' Clusters in Recoverin, a Calcium Binding Protein with Four EF-Hand Motifs ' , Molecules , vol. 24 , no. 13 , pp. – . https://doi.org/10.3390/molecules24132494
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14Academic Journal
المؤلفون: Denesyuk, Alexandre, Denessiouk, Konstantin, Johnson, Mark S
المصدر: Denesyuk , A , Denessiouk , K & Johnson , M S 2018 , ' Top surface blade residues and the central channel water molecules are conserved in every repeat of the integrin-like β-propeller structures. ' , Journal of Structural Biology , vol. 201 , no. 2 , pp. 155–161 . https://doi.org/10.1016/j.jsb.2017.10.005
مصطلحات موضوعية: integrins, protein structure motifs, bioinformatics
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15Academic Journal
المؤلفون: Denesyuk, Alexandre, Permyakov, SE, Johnson, Mark S, Permyakov, EA, Denessiouk, Konstantin
المصدر: Denesyuk , A , Permyakov , SE , Johnson , M S , Permyakov , EA & Denessiouk , K 2017 , ' Building kit for metal cation binding sites in proteins. ' , Biochemical and Biophysical Research Communications , vol. 494 , no. 1-2 , pp. 311–317 . https://doi.org/10.1016/j.bbrc.2017.10.034
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16Academic Journal
المؤلفون: Kazakov, Alexei S., Sokolov, Andrei S., Vologzhannikova, Alisa A., Permyakova, Maria E., Khorn, Polina A., Ismailov, Ramis G., Denessiouk, Konstantin, Denesyuk, Alexandre, Rastrygina, Victoria A., Baksheeva, Viktoriia E., Zernii, Evgeni Yu., Zinchenko, Dmitry V., Glazatov, Vladimir V., Uversky, Vladimir N., Mirzabekov, Tajib A., Permyakov, Eugene A., Permyakov, Sergei E.
المصدر: Kazakov , A S , Sokolov , A S , Vologzhannikova , A A , Permyakova , M E , Khorn , P A , Ismailov , R G , Denessiouk , K , Denesyuk , A , Rastrygina , V A , Baksheeva , V E , Zernii , E Y , Zinchenko , D V , Glazatov , V V , Uversky , V N , Mirzabekov , T A , Permyakov , E A & Permyakov , S E 2017 , ' Interleukin-11 binds specific EF-hand proteins via their conserved structural motifs ' , Journal of ....
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17Academic Journal
المؤلفون: Denesyuk, Alexandre, Permyakov, SE, Johnson, Mark S, Permyakov, EA, Denessiouk, Konstantin
المصدر: Denesyuk , A , Permyakov , SE , Johnson , M S , Permyakov , EA & Denessiouk , K 2017 , ' Building kit for metal cation binding sites in proteins. ' , Biochemical and Biophysical Research Communications , vol. 494 , no. 1-2 , pp. 311–317 . https://doi.org/10.1016/j.bbrc.2017.10.034
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18Academic Journal
المؤلفون: Dimitriou, Polytimi, Denesyuk, Alexandre, Takahashi, Seiji, Yamashita, Satoshi, Johnson, Mark S, Nakayama, Toru, Denessiouk, Konstantin
المصدر: Dimitriou , P , Denesyuk , A , Takahashi , S , Yamashita , S , Johnson , M S , Nakayama , T & Denessiouk , K 2017 , ' Alpha/beta-hydrolases: A unique structural motif coordinates catalytic acid residue in 40 protein fold families ' , Proteins , vol. 85 , no. 10 , pp. 1845–1855 . https://doi.org/10.1002/prot.25338
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19Academic Journal
المؤلفون: Denesyuk, Alexandre, Permyakov, Sergei E., Johnson, Mark S, Permyakov, Eugene A., Denessiouk, Konstantin
المصدر: Denesyuk , A , Permyakov , S E , Johnson , M S , Permyakov , E A & Denessiouk , K 2017 , ' Novel calcium recognition constructions in proteins: Calcium blade and EF-hand zone ' , Biochemical and Biophysical Research Communications , vol. 483 , no. 3 , pp. 958–963 . < http://dx.doi.org/10.1016/j.bbrc.2017.01.040 >
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20Academic Journal
المؤلفون: Kazakov, AS, Sokolov, AS, Vologzhannikova, AA, Permyakova, ME, Khorn, PA, Ismailov, RG, Denessiouk, Konstantin, Denesyuk, Alexandre, Rastrygina, VA, Baksheeva, VE, Zernii, EY, Zinchenko, DV, Glazatov, VV, Uversky, VN, Mirzabekov, TA, Permyakov, EA, Permyakov, SE
المصدر: Kazakov , AS , Sokolov , AS , Vologzhannikova , AA , Permyakova , ME , Khorn , PA , Ismailov , RG , Denessiouk , K , Denesyuk , A , Rastrygina , VA , Baksheeva , VE , Zernii , EY , Zinchenko , DV , Glazatov , VV , Uversky , VN , Mirzabekov , TA , Permyakov , EA & Permyakov , SE 2016 , ' Interleukin-11 binds specific EF-hand proteins via their conserved structural motifs ' , Journal of Biomolecular Structure and Dynamics , pp. 1–14 . https://doi.org/10.1080/07391102.2015.1132392
مصطلحات موضوعية: cancer, intrinsic disorder, interleukin, EF-hand