المؤلفون: Betsegaw Lemma, Di Zhang, Ganga B. Vamisetti, Bryan G. Wentz, Hiroaki Suga, Ashraf Brik, Jacek Lubkowski, David Fushman

المصدر: Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/9058e9e4ef084ba383c97031acda0042

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M Camara, Yamini Dalal, David Fushman, Garegin A Papoian

المصدر: PLoS Computational Biology, Vol 20, Iss 1, p e1011721 (2024)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011721&type=printable; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/911e2e3354f440d1907297889510cd1f

المؤلفون: Pawel M. Wydorski, Jerzy Osipiuk, Benjamin T. Lanham, Christine Tesar, Michael Endres, Elizabeth Engle, Robert Jedrzejczak, Vishruth Mullapudi, Karolina Michalska, Krzysztof Fidelis, David Fushman, Andrzej Joachimiak, Lukasz A. Joachimiak

المصدر: Nature Communications, Vol 14, Iss 1, Pp 1-18 (2023)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/20bdc439d6044b688862dd5d1daffd85

المؤلفون: Helge M. Magnussen, Syed F. Ahmed, Gary. J. Sibbet, Ventzislava A. Hristova, Koji Nomura, Andreas K. Hock, Lewis J. Archibald, Andrew G. Jamieson, David Fushman, Karen H. Vousden, Allan M. Weissman, Danny T. Huang

المصدر: Nature Communications, Vol 11, Iss 1, Pp 1-15 (2020)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/80e8bf383dda460bb88d16b6b1cd6555

المؤلفون: Aixin Song, Zachary Hazlett, Dulith Abeykoon, Jeremy Dortch, Andrew Dillon, Justin Curtiss, Sarah Bollinger Martinez, Christopher P Hill, Clinton Yu, Lan Huang, David Fushman, Robert E Cohen, Tingting Yao

المصدر: eLife, Vol 10 (2021)

مصطلحات موضوعية: UCH37, UCHL5, ubiquitin, DUB, branched ubiquitin chain, proteasome, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/72798; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/9c4ca33ec53a49a49f85fa2ba7b8f54f

المؤلفون: Abhishek Narayan, Soundhararajan Gopi, David Fushman, Athi N. Naganathan

المصدر: Nature Communications, Vol 10, Iss 1, Pp 1-9 (2019)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/c5f2bfeffc4b4a10bc4d15207c703514

المؤلفون: Thomas E. O’Brien, Lev B. Ioffe, Yuan Su, David Fushman, Hartmut Neven, Ryan Babbush, Vadim Smelyanskiy

المصدر: PRX Quantum, Vol 3, Iss 3, p 030345 (2022)

مصطلحات موضوعية: Physics, QC1-999, Computer software, QA76.75-76.765

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2691-3399

URL الوصول: https://doaj.org/article/04c264882a874556a8cb38bd24c832bb

المؤلفون: Andrea Caceres, Fu Shang, Eric Wawrousek, Qing Liu, Orna Avidan, Ales Cvekl, Ying Yang, Aydin Haririnia, Andrew Storaska, David Fushman, Jer Kuszak, Edward Dudek, Donald Smith, Allen Taylor

المصدر: PLoS ONE, Vol 5, Iss 10, p e13331 (2010)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC2958118?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/9bdcfd04c17c462293502d2a19a67fa3

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/journal_contribution/Supplemental_text_for_method_detailss_extensive_results_and_discussions_/24951952

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s001
https://figshare.com/articles/journal_contribution/Supplemental_text_for_method_detailss_extensive_results_and_discussions_/24951952

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/media/Folding_trajectories_of_eukaryotic_histones_and_archaeal_histones_/24951955

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s002
https://figshare.com/articles/media/Folding_trajectories_of_eukaryotic_histones_and_archaeal_histones_/24951955

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Contact_information_of_all_the_histone-like_protein_dimers_in_this_study_is_accurately_predicted_by_our_simulations_/24951970

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s006
https://figshare.com/articles/figure/Contact_information_of_all_the_histone-like_protein_dimers_in_this_study_is_accurately_predicted_by_our_simulations_/24951970

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Simulations_of_archaeal_histone_monomer_and_histone-like_protein_monomer_/24951961

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s004
https://figshare.com/articles/figure/Simulations_of_archaeal_histone_monomer_and_histone-like_protein_monomer_/24951961

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Clustering_analyses_for_the_final_snapshots_of_histone_monomer_simulations_/24951967

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s005
https://figshare.com/articles/figure/Clustering_analyses_for_the_final_snapshots_of_histone_monomer_simulations_/24951967

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Supplemental_RMSD_and_representative_snapshot_of_H2A_H2B_conformation_in_all-atom_simulations_/24951988

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s012
https://figshare.com/articles/figure/Supplemental_RMSD_and_representative_snapshot_of_H2A_H2B_conformation_in_all-atom_simulations_/24951988

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Full-sequence_histone_homodimers_show_more_stability_than_that_of_only_histone-fold_region_/24951997

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s015
https://figshare.com/articles/figure/Full-sequence_histone_homodimers_show_more_stability_than_that_of_only_histone-fold_region_/24951997

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/AWSEM-predicted_archaeal_histone_heterodimer_follows_the_same_folding_mechanism_/24951976

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s008
https://figshare.com/articles/figure/AWSEM-predicted_archaeal_histone_heterodimer_follows_the_same_folding_mechanism_/24951976

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Prediction_of_histone_homodimer_by_AWSEM_/24951994

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s014
https://figshare.com/articles/figure/Prediction_of_histone_homodimer_by_AWSEM_/24951994

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Histone_dimers_and_histone-like_dimer_proteins_fold_into_native_and_non-native_conformations_/24951982

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s010
https://figshare.com/articles/figure/Histone_dimers_and_histone-like_dimer_proteins_fold_into_native_and_non-native_conformations_/24951982

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/AlphaFold2-predicted_truncated_and_full-sequence_homo-complex_of_H2B_H2B_/24952003

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s017
https://figshare.com/articles/figure/AlphaFold2-predicted_truncated_and_full-sequence_homo-complex_of_H2B_H2B_/24952003

المؤلفون: Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, thermodynamically metastable configuration, respective structural stabilities, new alternative conformation, multiscale molecular dynamics, investigating 11 types, hidden ancestral head, cryptic ancestral symmetry, circular dichroism experiments, inverted conformation arises, histone dimeric proteins, atom md simulations, archaea , inverted non, histone proteins, utilized md, study addresses, store dna, results suggest, potential formations, native dimer, multimer models

Relation: https://figshare.com/articles/figure/Predicted_structures_of_homo-complex_of_H2A_H2A_by_AWSEM_and_AlphaFold2_/24952000

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011721.s016
https://figshare.com/articles/figure/Predicted_structures_of_homo-complex_of_H2A_H2A_by_AWSEM_and_AlphaFold2_/24952000