المؤلفون: Arakawa Takahiro, Carninci Piero, Suzuki Harukazu, Kawai Jun, Kubosaki Atsutaka, Saito Rintaro, Arner Erik, Kratz Anton, Tomita Masaru, Hayashizaki Yoshihide, Daub Carsten O

المصدر: BMC Genomics, Vol 11, Iss 1, p 257 (2010)

مصطلحات موضوعية: Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/11/257; https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/ecaaca7ee1e74a30ab13a3d843ee043b

المؤلفون: Daub Carsten O, Hayashizaki Yoshihide, Kawaji Hideya

المصدر: BMC Bioinformatics, Vol 10, Iss 1, p 133 (2009)

مصطلحات موضوعية: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/10/133; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/556e6a2f1a104014a857113a61c53158

المؤلفون: Daub Carsten O, Fukuda Shiro, Katayama Shintaro, Sandelin Albin, Takahashi Yukari, Nakamura Mari, Kawaji Hideya, Kai Chikatoshi, Kawai Jun, Yasuda Jun, Carninci Piero, Hayashizaki Yoshihide

المصدر: BMC Genomics, Vol 9, Iss 1, p 157 (2008)

مصطلحات موضوعية: Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/9/157; https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/a653719b05854722b9532ba1c963bcdf

المؤلفون: Akhter, Tahmina, Mileti, Enrichetta, Kere, Maura M., Kolmert, Johan, Konradsen, Jon R., Hedlin, Gunilla, Melén, Erik, Daub, Carsten O.

المساهمون: Karolinska Institutet, Vetenskapsrådet

المصدر: Heliyon ; volume 10, issue 14, page e34386 ; ISSN 2405-8440

الاتاحة: https://doi.org/10.1016/j.heliyon.2024.e34386
https://api.elsevier.com/content/article/PII:S2405844024104173?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S2405844024104173?httpAccept=text/plain

المؤلفون: DoGA consortium, Hörtenhuber, Matthias, Hytönen, Marjo K., Mukarram, Abdul Kadir, Arumilli, Meharji, Araujo, César L., Quintero, Ileana, Syrjä, Pernilla, Airas, Niina, Kaukonen, Maria, Kyöstilä, Kaisa, Niskanen, Julia, Jokinen, Tarja S., Mottaghitalab, Faezeh, Takan, Işıl, Salokorpi, Noora, Raman, Amitha, Stevens, Irene, Iivanainen, Antti, Yoshihara, Masahito, Gusev, Oleg, Bannasch, Danika, Sukura, Antti, Schoenebeck, Jeffrey J., Ezer, Sini, Katayama, Shintaro, Daub, Carsten O., Kere, Juha, Lohi, Hannes

المساهمون: Medicum, Veterinary Biosciences, Department of Medical and Clinical Genetics, University of Helsinki, Hannes Tapani Lohi / Principal Investigator, Institute for Molecular Medicine Finland, Departments of Faculty of Veterinary Medicine, Veterinary Pathology and Parasitology, Helsinki One Health (HOH), Antti Sukura / Principal Investigator, Equine and Small Animal Medicine, Antti Iivanainen / Principal Investigator, Veterinary Anatomy and Developmental Biology, Developmental interactions, Research Programs Unit, STEMM - Stem Cells and Metabolism Research Program, Juha Kere / Principal Investigator, Veterinary Genetics

مصطلحات موضوعية: Biomedicine, Genetics, developmental biology, physiology

وصف الملف: application/pdf

Relation: http://hdl.handle.net/10138/587492; 85206966043

الاتاحة: http://hdl.handle.net/10138/587492

المؤلفون: Steuer Ralf, Daub Carsten O, Selbig Joachim, Kloska Sebastian

المصدر: BMC Bioinformatics, Vol 5, Iss 1, p 118 (2004)

مصطلحات موضوعية: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/5/118; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/6f16ffca04c24d5bb3aa1a879ddc2a7d

المؤلفون: Hörtenhuber, Matthias, Mukarram, Abdul K, Stoiber, Marcus H, Brown, James B, Daub, Carsten O

المصدر: GigaScience. 9(3)

مصطلحات موضوعية: Sequence Analysis, Software, Molecular Sequence Annotation, databases, sample annotation, sequencing data annotation, sequencing experiments, Generic health relevance

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/61j297tp

المؤلفون: Kaukonen, Maria, Quintero, Ileana B, Mukarram, Abdul Kadir, Hytönen, Marjo K, Holopainen, Saila, Wickström, Kaisa, Kyöstilä, Kaisa, Arumilli, Meharji, Jalomäki, Sari, Daub, Carsten O, Kere, Juha, Lohi, Hannes

المصدر: PLOS Genetics. 16(3)

مصطلحات موضوعية: Biological Sciences, Genetics, Rare Diseases, Neurosciences, Biotechnology, Eye Disease and Disorders of Vision, Human Genome, Neurodegenerative, 2.1 Biological and endogenous factors, Aetiology, Eye, Animals, Case-Control Studies, Collagen Type IX, Dog Diseases, Dogs, Endothelin-2, Female, Frameshift Mutation, Genome-Wide Association Study, Haplotypes, Male, Models, Animal, Mutation, Pedigree, Phenotype, Retina, Retinal Degeneration, Retinitis Pigmentosa, DoGA Consortium, Developmental Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6gw99412
https://escholarship.org/content/qt6gw99412/qt6gw99412.pdf

المؤلفون: de Rie, Derek, Abugessaisa, Imad, Alam, Tanvir, Arner, Erik, Arner, Peter, Ashoor, Haitham, Åström, Gaby, Babina, Magda, Bertin, Nicolas, Burroughs, A Maxwell, Carlisle, Ailsa J, Daub, Carsten O, Detmar, Michael, Deviatiiarov, Ruslan, Fort, Alexandre, Gebhard, Claudia, Goldowitz, Daniel, Guhl, Sven, Ha, Thomas J, Harshbarger, Jayson, Hasegawa, Akira, Hashimoto, Kosuke, Herlyn, Meenhard, Heutink, Peter, Hitchens, Kelly J, Hon, Chung Chau, Huang, Edward, Ishizu, Yuri, Kai, Chieko, Kasukawa, Takeya, Klinken, Peter, Lassmann, Timo, Lecellier, Charles-Henri, Lee, Weonju, Lizio, Marina, Makeev, Vsevolod, Mathelier, Anthony, Medvedeva, Yulia A, Mejhert, Niklas, Mungall, Christopher J, Noma, Shohei, Ohshima, Mitsuhiro, Okada-Hatakeyama, Mariko, Persson, Helena, Rizzu, Patrizia, Roudnicky, Filip, Sætrom, Pål, Sato, Hiroki, Severin, Jessica, Shin, Jay W, Swoboda, Rolf K, Tarui, Hiroshi, Toyoda, Hiroo, Vitting-Seerup, Kristoffer, Winteringham, Louise, Yamaguchi, Yoko, Yasuzawa, Kayoko, Yoneda, Misako, Yumoto, Noriko, Zabierowski, Susan, Zhang, Peter G, Wells, Christine A, Summers, Kim M, Kawaji, Hideya, Sandelin, Albin, Rehli, Michael, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair RR, de Hoon, Michiel JL

المصدر: Nature Biotechnology. 35(9)

مصطلحات موضوعية: Generic health relevance, Good Health and Well Being, Animals, Cells, Cultured, Gene Expression Profiling, Gene Library, High-Throughput Nucleotide Sequencing, Humans, Mice, MicroRNAs, Molecular Sequence Annotation, Promoter Regions, Genetic, FANTOM Consortium

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6pr3p0r9

المؤلفون: Sahu, Biswajyoti, Hartonen, Tuomo, Pihlajamaa, Päivi, Wei, Bei, Dave, Kashyap, Zhu, Fangjie, Kaasinen, Eevi, Lidschreiber, Katja, Lidschreiber, Michael, Daub, Carsten O., Cramer, Patrick, Kivioja, Teemu, Taipale, Jussi

المساهمون: Research Programs Unit, Medicum, Department of Biochemistry and Developmental Biology, ATG - Applied Tumor Genomics, Faculty of Medicine, Institute for Molecular Medicine Finland, Jussi Taipale / Principal Investigator, HUSLAB, Department of Pathology

مصطلحات موضوعية: TRANSCRIPTION-FACTOR-BINDING, DEVELOPMENTAL ENHANCERS, ACTIVE ENHANCERS, DNA, CHROMATIN, PROTEINS, MAPS, SITE, SPECIFICITIES, EXPRESSION, Biomedicine, Genetics, developmental biology, physiology

وصف الملف: application/pdf

Relation: We thank M. Taipale, S. Wickstrom and M. Vartiainen for critical reading of the manuscript; A. M. Luoto, K. Jussila and A. Kolterud for technical assistance; and L. Fei, J. Xia and N. Poddar for their help during the revision. We also thank HiLIFE research infrastructures, including Biomedium Functional Genomics, FIMM technology center and sequencing core facilities of Karolinska Institute and SciLifeLab. We wish to acknowledge CSC -IT Center for Science, Finland for computational resources. J.T. was supported by the Academy of Finland (Finnish Center of Excellence program grants 2012-2017, 250345 and 2018-2025, 312042), United Kingdom Research and Innovation Medical Research Council (grant MR/V000500/1) and Cancer Research UK (grant C55958/A28801/RG99643). B.S. was supported by the Academy of Finland (grants 274555 and 317807), the Finnish Cancer Foundation and the Sigrid Juselius and Jane and Aatos Erkko foundations. T.H. was supported by a personal grant from Emil Aaltonen Foundation, and P.P. was supported by the Academy of Finland (grant 288836). K.L., M.L. and P.C. were funded by The Center for Medical Innovation (CIMED) and SciLifeLab.; Sahu , B , Hartonen , T , Pihlajamaa , P , Wei , B , Dave , K , Zhu , F , Kaasinen , E , Lidschreiber , K , Lidschreiber , M , Daub , C O , Cramer , P , Kivioja , T & Taipale , J 2022 , ' Sequence determinants of human gene regulatory elements ' , Nature Genetics , vol. 54 , no. 3 , pp. 283-+ . https://doi.org/10.1038/s41588-021-01009-4; ORCID: /0000-0001-6576-5440/work/111914855; ORCID: /0000-0002-1333-8049/work/111917992; ORCID: /0000-0001-9725-6907/work/137860639; http://hdl.handle.net/10138/342898; 85b88be6-7ee2-4fee-a838-7e05979d4837; 000758968100001

الاتاحة: http://hdl.handle.net/10138/342898

المؤلفون: Baranasic, Damir, Hörtenhuber, Matthias, Balwierz, Piotr J., Zehnder, Tobias, Mukarram, Abdul Kadir, Onichtchouk, Daria, Daub, Carsten O., Lenhard, Boris, Müller, Ferenc

المصدر: Nature Genetics. - 54, 7 (2022) , 1037-1050, ISSN: 1546-1718

وصف الملف: pdf

Relation: https://freidok.uni-freiburg.de/data/229838

الاتاحة: https://freidok.uni-freiburg.de/data/229838
https://nbn-resolving.org/urn:nbn:de:bsz:25-freidok-2298385
https://doi.org/10.1038/s41588-022-01089-w
https://freidok.uni-freiburg.de/dnb/download/229838

المؤلفون: Stevens, Irene, Mukarram, Abdul Kadir, Hörtenhuber, Matthias, Meehan, Terrence F., Rung, Johan, Daub, Carsten O.

المصدر: PloS Computational Biology. 16(10)

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-424377
https://doi.org/10.1371/journal.pcbi.1008260
https://uu.diva-portal.org/smash/get/diva2:1497228/FULLTEXT01.pdf

المؤلفون: Grankvist, Rikard, Chireh, Arvin, Sandell, Mikael, Mukarram, Abdul Kadir, Jaff, Nasren, Berggren, Ingrid, Persson, Hans, Linde, Cecilia, Arnberg, Fabian, Lundberg, Johan, Ugander, Martin, La Manno, Gioele, Jonsson, Stefan, Daub, Carsten O., Holmin, Staffan

المصدر: Scientific Reports. 10(1)

وصف الملف: print

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-281166
https://doi.org/10.1038/s41598-020-64900-w

المؤلفون: Chireh, Arvin, Grankvist, Rikard, Sandell, Mikael, Mukarram, Abdul Kadir, Arnberg, Fabian, Lundberg, Johan, Daub, Carsten O., Holmin, Staffan

المساهمون: Lionetti, Vincenzo, Familjen Erling-Perssons Stiftelse, Ragnar Söderbergs stiftelse, Stockholms Läns Landsting, Karolinska Institutet, MedTechLabs

المصدر: PLOS ONE ; volume 16, issue 4, page e0250582 ; ISSN 1932-6203

الاتاحة: http://dx.doi.org/10.1371/journal.pone.0250582
https://dx.plos.org/10.1371/journal.pone.0250582

المؤلفون: Yu, Nancy Yiu-Lin, Hallstrom, Bjorn M., Fagerberg, Linn, Pontén, Fredrik, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Uhlen, Mathias, Daub, Carsten O.

المصدر: Nucleic Acids Research. 43(14):6787-6798

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-263457
https://doi.org/10.1093/nar/gkv608
https://uu.diva-portal.org/smash/get/diva2:859214/FULLTEXT01.pdf

المؤلفون: Yoosuf, Niyaz, Navarro, José Fernández, Salmén, Fredrik, Ståhl, Patrik L., Daub, Carsten O.

المساهمون: CMM Groep Cuppen, Hubrecht Institute with UMC

مصطلحات موضوعية: Breast cancer, Cancer diagnosis, Expression signature, Machine learning, Spatial transcriptomics, Oncology, Cancer Research

وصف الملف: application/pdf

Relation: https://dspace.library.uu.nl/handle/1874/439409

الاتاحة: https://dspace.library.uu.nl/handle/1874/439409

المؤلفون: Ha, Thomas J, Zhang, Peter G Y, Robert, Remi, Yeung, Joanna, Swanson, Douglas J, Mathelier, Anthony, Wasserman, Wyeth W, Im, Sujin, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Daub, Carsten O, Arner, Erik, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Goldowitz, Daniel

المساهمون: University of British Columbia. Centre for Molecular Medicine and Therapeutics, Children's Hospital (Vancouver, B.C.). Research Institute, Children's Hospital (Vancouver, B.C.)

مصطلحات موضوعية: Cerebellar development, Transcriptome, HeliScopeCAGE, Motif activity, Transfactivity, Transcription factors, RNAi, Atf4, Rfx3, Scrt2

Relation: BMC Genomics. 2019 Sep 18;20(1):718; http://hdl.handle.net/2429/71705

الاتاحة: http://hdl.handle.net/2429/71705
https://doi.org/10.1186/s12864-019-6063-9

المؤلفون: FANTOM Consortium, Arner, Erik, Daub, Carsten O., Vitting-Seerup, Kristoffer, Andersson, Robin, Lilje, Berit, Drabløs, Finn, Lennartsson, Andreas, Rönnerblad, Michelle, Hrydziuszko, Olga, Vitezic, Morana, Freeman, Tom C., Alhendi, Ahmad M. N., Arner, Peter, Axton, Richard, Baillie, J. Kenneth, Beckhouse, Anthony, Bodega, Beatrice, Briggs, James, Brombacher, Frank, Davis, Margaret, Detmar, Michael, Ehrlund, Anna, Endoh, Mitsuhiro, Eslami, Afsaneh, Fagiolini, Michela, Fairbairn, Lynsey, Faulkner, Geoffrey J., Ferrai, Carmelo, Fisher, Malcolm E., Forrester, Lesley, Goldowitz, Daniel, Guler, Reto, Ha, Thomas, Hara, Mitsuko, Herlyn, Meenhard, Ikawa, Tomokatsu, Kai, Chieko, Kawamoto, Hiroshi, Khachigian, Levon M., Klinken, S. Peter, Kojima, Soichi, Koseki, Haruhiko, Klein, Sarah, Mejhert, Niklas, Miyaguchi, Ken, Mizuno, Yosuke, Morimoto, Mitsuru, Morris, Kelly J., Mummery, Christine, Nakachi, Yutaka, Ogishima, Soichi, Okada-Hatakeyama, Mariko, Okazaki, Yasushi, Orlando, Valerio, Ovchinnikov, Dmitry, Passier, Robert, Patrikakis, Margaret, Pombo, Ana, Qin, Xian-Yang, Roy, Sugata, Sato, Hiroki, Savvi, Suzana, Saxena, Alka, Schwegmann, Anita, Sugiyama, Daisuke, Swoboda, Rolf, Tanaka, Hiroshi, Tomoiu, Andru, Winteringham, Louise N., Wolvetang, Ernst, Yanagi-Mizuochi, Chiyo, Yoneda, Misako, Zabierowski, Susan, Zhang, Peter, Abugessaisa, Imad, Bertin, Nicolas, Diehl, Alexander D., Fukuda, Shiro, Furuno, Masaaki, Harshbarger, Jayson, Hasegawa, Akira, Hori, Fumi, Ishikawa-Kato, Sachi, Ishizu, Yuri, Itoh, Masayoshi, Kawashima, Tsugumi, Kojima, Miki, Kondo, Naoto, Lizio, Marina, Meehan, Terrence F., Mungall, Christopher J., Murata, Mitsuyoshi, Nishiyori-Sueki, Hiromi, Sahin, Serkan, Nagao-Sato, Sayaka, Severin, Jessica, de Hoon, Michiel J. L., Kawai, Jun, Kasukawa, Takeya, Lassmann, Timo, Suzuki, Harukazu, Kawaji, Hideya, Summers, Kim M., Wells, Christine, Hume, David A., Forrest, Alistair R. R., Sandelin, Albin, Carninci, Piero, Hayashizaki, Yoshihide

المصدر: Science, 2015 Feb . 347(6225), 1010-1014.

URL الوصول: http://www.jstor.org/stable/24746227

المؤلفون: Sugiaman-Trapman, Debora, Vitezic, Morana, Jouhilahti, Eeva-Mari, Mathelier, Anthony, Lauter, Gilbert, Misra, Sougat, Daub, Carsten O., Kere, Juha, Swoboda, Peter

المساهمون: Research Programme for Molecular Neurology, Juha Kere / Principal Investigator, Research Programs Unit

مصطلحات موضوعية: Cell differentiation, Cilia, Spermatogenesis, Immune cell proliferation, Neuronal development, Cell cycle control, Tumor suppression, MAMMALIAN EXPRESSION ATLAS, DNA-BINDING PROTEINS, BETA-CELLS, VERTEBRATE DEVELOPMENT, INSULIN-SECRETION, BRAIN-DEVELOPMENT, DEPENDENT MANNER, CILIARY GENES, C. ELEGANS, FACTOR X1, Genetics, developmental biology, physiology, Biomedicine

وصف الملف: application/pdf

Relation: We acknowledge financial support from the Swedish Research Council (Vetenskapsradet), from the Swedish Brain Foundation (Hjarnfonden), and from the Torsten Soderberg and Ahlen Foundations. DST received support from the KI in the form of a PhD student (KID) scholarship. MV was supported by the EU Horizon 2020 Marie Curie Individual Fellowship. AM was supported by a Genome Canada Large Scale Applied Research Grant (No. 174CDE), by funding provided by the Child and Family Research Institute and the British Columbia Children's Hospital Foundation (Vancouver, BC, Canada), by funding from the Norwegian Research Council (Helse Sor-Ost) and the University of Oslo through the Centre for Molecular Medicine Norway (NCMM) and the Oslo University Hospital (Radiumhospitalet). GL acknowledges fellowship support from the Swedish Society for Medical Research (Svenska Sallskapet for Medicinsk Forskning), the Lars Hierta Memorial Foundation (Stiftelsen Lars Hiertas Minne) and from the Thuring Foundation. JK was the recipient of a KI Distinguished Professor Award and a Royal Society Wolfson Research Excellence Award. PS received support from the KI Strategic Neurosciences Program.; Sugiaman-Trapman , D , Vitezic , M , Jouhilahti , E-M , Mathelier , A , Lauter , G , Misra , S , Daub , C O , Kere , J & Swoboda , P 2018 , ' Characterization of the human RFX transcription factor family by regulatory and target gene analysis ' , BMC Genomics , vol. 19 , 181 . https://doi.org/10.1186/s12864-018-4564-6; ORCID: /0000-0003-2879-7659/work/51991464; http://hdl.handle.net/10138/233928; 0930b74d-c4d4-4e4b-89f5-5b7e117ed3e7; 85043383707; 000427128900002

الاتاحة: http://hdl.handle.net/10138/233928

المؤلفون: Zhang, Peter, Dimont, Emmanuel, Ha, Thomas, Swanson, Douglas J, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Daub, Carsten O, Arner, Erik, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Hide, Winston, Goldowitz, Dan

المساهمون: University of British Columbia. Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute

Relation: 75399; BMC Genomics. 2018 Jan 11;19(1):39; http://hdl.handle.net/2429/64364

الاتاحة: http://hdl.handle.net/2429/64364
https://doi.org/10.1186/s12864-017-4291-4