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1Academic Journal
المؤلفون: Montagne, Janelle M., Mitchell, Jacob T., Tandurella, Joseph A., Christenson, Eric S., Danilova, Ludmila V., Deshpande, Atul, Loth, Melanie, Sidiropoulos, Dimitrios N., Davis-Marcisak, Emily, Bergman, Daniel R., Zhu, Qingfeng, Wang, Hao, Kagohara, Luciane T., Engle, Logan L., Green, Benjamin F., Favorov, Alexander V., Ho, Won Jin, Lim, Su Jin, Zhang, Rui, Li, Pan, Gai, Jessica, Mo, Guanglan, Mitchell, Sarah, Wang, Rulin, Vaghasia, Ajay, Hou, Wenpin, Xu, Yao, Zimmerman, Jacquelyn W., Elisseeff, Jennifer H., Yegnasubramanian, Srinivasan, Anders, Robert A., Jaffee, Elizabeth M., Zheng, Lei, Fertig, Elana J.
المساهمون: Lustgarten Foundation, American Association of Immunologists, National Institutes of Health, Sidney Kimmel Comprehensive Cancer Center, National Cancer Institute
المصدر: iScience ; volume 28, issue 1, page 111569 ; ISSN 2589-0042
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2Academic Journal
المؤلفون: Hill, Steven M., Heiser, Laura M., Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K., Carlin, Daniel E., Zhang, Yang, Sokolov, Artem, Paull, Evan O., Wong, Chris K., Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V., Favorov, Alexander V., Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W., Long, Byron L., Noren, David P., Bisberg, Alexander J., Mills, Gordon B., Gray, Joe W., Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A., Fertig, Elana J., Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M., Spellman, Paul T., Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach
وصف الملف: text; spreadsheet
Relation: https://tuprints.ulb.tu-darmstadt.de/27016/1/nmeth.3773.pdf; https://tuprints.ulb.tu-darmstadt.de/27016/2/41592_2016_BFnmeth3773_MOESM208_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/3/41592_2016_BFnmeth3773_MOESM209_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/4/41592_2016_BFnmeth3773_MOESM210_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/5/41592_2016_BFnmeth3773_MOESM211_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/6/41592_2016_BFnmeth3773_MOESM212_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/7/41592_2016_BFnmeth3773_MOESM213_ESM.xlsx; https://tuprints.ulb.tu-darmstadt.de/27016/8/41592_2016_BFnmeth3773_MOESM207_ESM.pdf; Hill, Steven M.; Heiser, Laura M.; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K.; Carlin, Daniel E.; Zhang, Yang; Sokolov, Artem; Paull, Evan O.; Wong, Chris K.; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V.; Favorov, Alexander V.; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W.; Long, Byron L.; Noren, David P.; Bisberg, Alexander J.; Mills, Gordon B.; Gray, Joe W.; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A.; Fertig, Elana J.; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M.; Spellman, Paul T.; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, Sach (2024)Inferring causal molecular networks: empirical assessment through a community-based effort. In: Nature Methods, 2016, 13 (4) doi:10.26083/tuprints-00027016 Article, Secondary publication, Publisher's Version
الاتاحة: http://tuprints.ulb.tu-darmstadt.de/27016/
https://tuprints.ulb.tu-darmstadt.de/27016/1/nmeth.3773.pdf
https://tuprints.ulb.tu-darmstadt.de/27016/2/41592_2016_BFnmeth3773_MOESM208_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/3/41592_2016_BFnmeth3773_MOESM209_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/4/41592_2016_BFnmeth3773_MOESM210_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/5/41592_2016_BFnmeth3773_MOESM211_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/6/41592_2016_BFnmeth3773_MOESM212_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/7/41592_2016_BFnmeth3773_MOESM213_ESM.xlsx
https://tuprints.ulb.tu-darmstadt.de/27016/8/41592_2016_BFnmeth3773_MOESM207_ESM.pdf
https://www.nature.com/articles/nmeth.3773 -
3Academic Journal
المؤلفون: Kelley, Dylan Z, Flam, Emily L, Guo, Theresa, Danilova, Ludmila V, Zamuner, Fernando T, Bohrson, Craig, Considine, Michael, Windsor, Eric J, Bishop, Justin A, Zhang, Chi, Koch, Wayne M, Sidransky, David, Westra, William H, Chung, Christine H, Califano, Joseph A, Wheelan, Sarah, Favorov, Alexander V, Florea, Liliana, Fertig, Elana J, Gaykalova, Daria A
مصطلحات موضوعية: Biomedical and Clinical Sciences, Oncology and Carcinogenesis, Cancer, Dental/Oral and Craniofacial Disease, Genetics, Rare Diseases, Aetiology, 2.1 Biological and endogenous factors, Alternative Splicing, Cell Line, Tumor, Cell Movement, Cell Proliferation, Cell Survival, Gelsolin, Gene Expression Regulation, Neoplastic, Humans, Models, Biological, Neoplasm Invasiveness, Neoplasm Metastasis, Squamous Cell Carcinoma of Head and Neck, Clinical Sciences, General Clinical Medicine, Biochemistry and cell biology, Clinical sciences
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/7sj4h6vd
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4Academic Journal
المؤلفون: Stein-O’Brien, Genevieve, Kagohara, Luciane T, Li, Sijia, Thakar, Manjusha, Ranaweera, Ruchira, Ozawa, Hiroyuki, Cheng, Haixia, Considine, Michael, Schmitz, Sandra, Favorov, Alexander V, Danilova, Ludmila V, Califano, Joseph A, Izumchenko, Evgeny, Gaykalova, Daria A, Chung, Christine H, Fertig, Elana J
المصدر: Genome Medicine. 10(1)
مصطلحات موضوعية: Biological Sciences, Genetics, Biotechnology, Cancer, Rare Diseases, Orphan Drug, Antimicrobial Resistance, Human Genome, Aetiology, Development of treatments and therapeutic interventions, 2.1 Biological and endogenous factors, 5.1 Pharmaceuticals, Algorithms, Cell Line, Tumor, Cetuximab, Clone Cells, DNA Methylation, Disease-Free Survival, Drug Resistance, Neoplasm, Epigenesis, Genetic, ErbB Receptors, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Genomics, Head and Neck Neoplasms, Humans, Neoplasms, Squamous Cell, Protein Kinase Inhibitors, Receptor, Fibroblast Growth Factor, Type 1, Time Factors, Treatment Outcome, Acquired resistance, Data integration, Epigenetics, Precision medicine, Time course analysis, Clinical Sciences
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/057977h2
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5Academic Journal
المؤلفون: Kelley, Dylan Z, Flam, Emily L, Izumchenko, Evgeny, Danilova, Ludmila V, Wulf, Hildegard A, Guo, Theresa, Singman, Dzov A, Afsari, Bahman, Skaist, Alyza M, Considine, Michael, Welch, Jane A, Stavrovskaya, Elena, Bishop, Justin A, Westra, William H, Khan, Zubair, Koch, Wayne M, Sidransky, David, Wheelan, Sarah J, Califano, Joseph A, Favorov, Alexander V, Fertig, Elana J, Gaykalova, Daria A
المصدر: Cancer Research. 77(23)
مصطلحات موضوعية: Biological Sciences, Biomedical and Clinical Sciences, Bioinformatics and Computational Biology, Genetics, Oncology and Carcinogenesis, Infectious Diseases, Dental/Oral and Craniofacial Disease, HIV/AIDS, Biotechnology, Human Genome, Sexually Transmitted Infections, Cancer, Rare Diseases, Aetiology, 2.1 Biological and endogenous factors, Good Health and Well Being, Base Sequence, Cell Line, Tumor, Chromatin, Chromatin Immunoprecipitation, Gene Expression Regulation, Neoplastic, Genome, Human, Head and Neck Neoplasms, Humans, Papillomaviridae, Sequence Analysis, DNA, Virus Integration, Oncology & Carcinogenesis, Biochemistry and cell biology, Oncology and carcinogenesis
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/445839n9
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6Academic Journal
المؤلفون: Finegersh, Andrey, Kulich, Scott, Guo, Theresa, Favorov, Alexander V, Fertig, Elana J, Danilova, Ludmila V, Gaykalova, Daria A, Califano, Joseph A, Duvvuri, Umamaheswar
المصدر: Scientific reports. 7(1)
مصطلحات موضوعية: Humans, Carcinoma, Squamous Cell, Head and Neck Neoplasms, Neoplasm Proteins, DNA Methylation, Epigenesis, Genetic, CpG Islands, Promoter Regions, Genetic, Anoctamin-1, Carcinoma, Squamous Cell, Epigenesis, Genetic, Promoter Regions
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/3j83q117
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7Academic Journal
المؤلفون: Hill, Steven M, Heiser, Laura M, Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K, Carlin, Daniel E, Zhang, Yang, Sokolov, Artem, Paull, Evan O, Wong, Chris K, Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V, Favorov, Alexander V, Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W, Long, Byron L, Noren, David P, Bisberg, Alexander J, Mills, Gordon B, Gray, Joe W, Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A, Fertig, Elana J, Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M, Spellman, Paul T, Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach
المصدر: Nature Methods. 13(4)
مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Networking and Information Technology R&D (NITRD), Cancer, Bioengineering, 2.1 Biological and endogenous factors, Generic health relevance, Algorithms, Causality, Computational Biology, Computer Simulation, Gene Expression Profiling, Gene Regulatory Networks, Humans, Models, Biological, Neoplasms, Protein Interaction Mapping, Signal Transduction, Software, Systems Biology, Tumor Cells, Cultured, HPN-DREAM Consortium, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences
وصف الملف: application/pdf
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8Academic Journal
المؤلفون: Li, Keyu, Tandurella, Joseph A., Gai, Jessica, Zhu, Qingfeng, Lim, Su Jin, Thomas, Dwayne L., Xia, Tao, Mo, Guanglan, Mitchell, Jacob T., Montagne, Janelle, Lyman, Melissa, Danilova, Ludmila V., Zimmerman, Jacquelyn W., Kinny-Köster, Benedict, Zhang, Tengyi, Chen, Linda, Blair, Alex B., Heumann, Thatcher, Parkinson, Rose, Durham, Jennifer N., Narang, Amol K., Anders, Robert A., Wolfgang, Christopher L., Laheru, Daniel A., He, Jin, Osipov, Arsen, Thompson, Elizabeth D., Wang, Hao, Fertig, Elana J., Jaffee, Elizabeth M., Zheng, Lei
المصدر: Cancer Cell ; volume 40, issue 11, page 1374-1391.e7 ; ISSN 1535-6108
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9Academic Journal
المؤلفون: Gaykalova, Daria A., Mambo, Elizabeth, Choudhary, Ashish, Houghton, Jeffery, Buddavarapu, Kalyan, Sanford, Tiffany, Darden, Will, Adai, Alex, Hadd, Andrew, Latham, Gary, Danilova, Ludmila V., Bishop, Justin, Li, Ryan J., Westra, William H., Hennessey, Patrick, Koch, Wayne M., Ochs, Michael F., Califano, Joseph A., Sun, Wenyue
المصدر: PLOS ONE ; volume 15, issue 5, page e0233409 ; ISSN 1932-6203
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10Academic JournalCytokines secreted by stromal cells in TNBC microenvironment as potential targets for cancer therapy
المؤلفون: Malone, Marie K., Smrekar, Karly, Park, Sunju, Blakely, Brianna, Walter, Alec, Nasta, Nicholas, Park, Jay, Considine, Michael, Danilova, Ludmila V., Pandey, Niranjan B., Fertig, Elana J., Popel, Aleksander S., Jin, Kideok
المصدر: Cancer Biology & Therapy ; volume 21, issue 6, page 560-569 ; ISSN 1538-4047 1555-8576
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11Academic Journal
المؤلفون: Kagohara, Luciane T, Stein-O’Brien, Genevieve L, Kelley, Dylan, Flam, Emily, Wick, Heather C, Danilova, Ludmila V, Easwaran, Hariharan, Favorov, Alexander V, Qian, Jiang, Gaykalova, Daria A, Fertig, Elana J
المساهمون: National Institutes of Health
المصدر: Briefings in Functional Genomics ; volume 17, issue 1, page 49-63 ; ISSN 2041-2649 2041-2657
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12Academic Journal
المؤلفون: Gaykalova, Daria A., Mambo, Elizabeth, Choudhary, Ashish, Houghton, Jeffery, Buddavarapu, Kalyan, Sanford, Tiffany, Darden, Will, Adai, Alex, Hadd, Andrew, Latham, Gary, Danilova, Ludmila V., Bishop, Justin, Li, Ryan J., Westra, William H., Hennessey, Patrick, Koch, Wayne M., Ochs, Michael F., Califano, Joseph A., Sun, Wenyue
المساهمون: Amin, A. R. M. Ruhul
المصدر: PLoS ONE ; volume 9, issue 3, page e93102 ; ISSN 1932-6203
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13Academic Journal
المؤلفون: Fertig, Elana J., Markovic, Ana, Danilova, Ludmila V., Gaykalova, Daria A., Cope, Leslie, Chung, Christine H., Ochs, Michael F., Califano, Joseph A.
المساهمون: Ramqvist, Torbjörn
المصدر: PLoS ONE ; volume 8, issue 11, page e78127 ; ISSN 1932-6203
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14Academic Journal
المصدر: Frontiers in Genetics ; volume 2 ; ISSN 1664-8021
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15Electronic Resource
المؤلفون: Stein-O'Brien, Genevieve, Stein-O'Brien, Genevieve, Kagohara, Luciane T, Li, Sijia, Thakar, Manjusha, Ranaweera, Ruchira, Ozawa, Hiroyuki, Cheng, Haixia, Considine, Michael, Schmitz, Sandra, Favorov, Alexander V, Danilova, Ludmila V, Califano, Joseph A, Izumchenko, Evgeny, Gaykalova, Daria A, Chung, Christine H, Fertig, Elana J
المصدر: Genome medicine; vol 10, iss 1, 37; 1756-994X
مصطلحات الفهرس: Cell Line, Tumor, Clone Cells, Humans, Neoplasms, Squamous Cell, Head and Neck Neoplasms, Protein Kinase Inhibitors, Disease-Free Survival, Treatment Outcome, Gene Expression Profiling, Genomics, DNA Methylation, Epigenesis, Genetic, Gene Expression Regulation, Neoplastic, Drug Resistance, Neoplasm, Algorithms, Time Factors, Receptor, Fibroblast Growth Factor, Type 1, ErbB Receptors, Cetuximab, Acquired resistance, Data integration, Epigenetics, Precision medicine, Time course analysis, Cancer, Human Genome, Biotechnology, Genetics, Antimicrobial Resistance, 2.1 Biological and endogenous factors, 5.1 Pharmaceuticals, Clinical Sciences, article
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16Electronic Resource
المؤلفون: UCL - SSS/IREC/MIRO - Pôle d'imagerie moléculaire, radiothérapie et oncologie, UCL - (SLuc) Unité d'oncologie médicale, UCL - (SLuc) Centre du cancer, Stein-O'Brien, Genevieve, Kagohara, Luciane T, Li, Sijia, Thakar, Manjusha, Ranaweera, Ruchira, Ozawa, Hiroyuki, Cheng, Haixia, Considine, Michael, Schmitz, Sandra, Favorov, Alexander V, Danilova, Ludmila V, Califano, Joseph A, Izumchenko, Evgeny, Gaykalova, Daria A, Chung, Christine H, Fertig, Elana J
المصدر: Genome Medicine : medicine in the post-genomic era, Vol. 10, no.1, p. 37 (2018)
مصطلحات الفهرس: Algorithms, Cell Line, Tumor, Cetuximab, Clone Cells, DNA Methylation, Disease-Free Survival, Drug Resistance, Neoplasm, Epigenesis, Genetic, ErbB Receptors, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Genomics, Head and Neck Neoplasms, Humans, Neoplasms, Squamous Cell, Protein Kinase Inhibitors, Receptor, Fibroblast Growth Factor, Type 1, Time Factors, Treatment Outcome, Acquired resistance, Data integration, Epigenetics, Precision medicine, Time course analysis, info:eu-repo/semantics/article
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17Academic Journal
المؤلفون: Hill, Steven M., Heiser, Laura M., Cokelaer, Thomas, Linger, Michael, Nesser, Nicole K., Carlin, Daniel E., Zhang, Yang, Sokolov, Artem, Paull, Evan O., Wong, Chris K., Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V., Favorov, Alexander V., Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W., Long, Byron L., Noren, David P., Bisberg, Alexander J., Mills, Gordon B., Gray, Joe W., Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A., Fertig, Elana J., Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M., Spellman, Paul T., Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach, Al-Ouran, Rami, Anton, Bernat, Arodz, Tomasz, Sichani, Omid Askari, Bagheri, Neda, Berlow, Noah (TTU), Bohler, Anwesha, Bonet, Jaume, Bonneau, Richard, Budak, Gungor, Bunescu, Razvan, Caglar, Mehmet (TTU), Cai, Binghuang, Cai, Chunhui, Carlon, Azzurra, Chen, Lujia, Ciaccio, Mark F., Cooper, Gregory, Coort, Susan, Creighton, Chad J., Daneshmand, Seyed Mohammad Hadi, De La Fuente, Alberto, Di Camillo, Barbara, Dutta-Moscato, Joyeeta, Emmett, Kevin, Evelo, Chris, Fassia, Mohammad Kasim H., Finotello, Francesca, Finkle, Justin D., Gao, Xi, Gao, Jean, Ghosh, Samik, Giaretta, Alberto, Großeholz, Ruth, Guinney, Justin, Hafemeister, Christoph, Hahn, Oliver, Haider, Saad (TTU), Hase, Takeshi, Hodgson, Jay, Hoff, Bruce, Hsu, Chih Hao, Hu, Ying, Huang, Xun, Jalili, Mahdi, Jiang, Xia, Kacprowski, Tim, Kaderali, Lars, Kang, Mingon, Kannan, Venkateshan, Kikuchi, Kaito, Kim, Dong Chul, Kitano, Hiroaki, Knapp, Bettina, Komatsoulis, George, Krämer, Andreas, Kursa, Miron Bartosz, Kutmon, Martina, Li, Yichao, Liang, Xiaoyu, Liu, Zhaoqi, Liu, Yu, Lu, Songjian, Lu, Xinghua, Manfrini, Marco, Matos, Marta R.A., Meerzaman, Daoud, Min, Wenwen, Müller, Christian Lorenz, Neapolitan, Richard E., Oliva, Baldo, Opiyo, Stephen Obol, Pal, Ranadip (TTU), Palinkas, Aljoscha, Planas-Iglesias, Joan, Poglayen, Daniel, Sambo, Francesco, Sanavia, Tiziana, Sharifi-Zarchi, Ali, Slawek, Janusz, Streck, Adam, Strunz, Sonja, Tegnér, Jesper, Thobe, Kirste, Toffolo, Gianna Maria, Trifoglio, Emanuele, Unger, Michael, Wan, Qian (TTU), Welch, Lonnie, Wu, Jia J., Xue, Albert Y., Yamanaka, Ryota, Yan, Chunhua, Zairis, Sakellarios, Zengerling, Michael, Zenil, Hector, Zi, Zhike
وصف الملف: application/pdf
Relation: Hill, S.M., Heiser, L.M., Cokelaer, T., Linger, M., Nesser, N.K., Carlin, D.E., Zhang, Y., Sokolov, A., Paull, E.O., Wong, C.K., Graim, K., Bivol, A., Wang, H., Zhu, F., Afsari, B., Danilova, L.V., Favorov, A.V., Lee, W.S., Taylor, D., . . . Zi, Z. 2016. Inferring causal molecular networks: Empirical assessment through a community-based effort. Nature Methods, 13(4). https://doi.org/10.1038/nmeth.3773; https://doi.org/10.1038/nmeth.3773; https://hdl.handle.net/2346/93827
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18Book
المؤلفون: Fertig, Elana J., Danilova, Ludmila V., Ochs, Michael F.
المصدر: Handbook of Statistical Bioinformatics ; page 533-565 ; ISBN 9783642163449 9783642163456
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19Academic Journal
المؤلفون: Kagohara, Luciane T., Stein-O'Brien, Genevieve L., Kelley, Dylan, Flam, Emily, Wick, Heather C., Danilova, Ludmila V., Easwaran, Hariharan, Favorov, Alexander V., Qian, Jiang, Gaykalova, Daria A., Fertig, Elana J.
المصدر: Briefings in Functional Genomics; Jan2018, Vol. 17 Issue 1, p49-63, 15p
مصطلحات موضوعية: EPIGENETICS, CANCER genetics, GENE expression, DNA methylation, HISTONE acetylation, NON-coding RNA, NUCLEOTIDE sequence
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20Academic Journal
المؤلفون: Danilova, Ludmila V.1 dlv2k@mail.ru, Pervouchine, Dmitri D.2,3 pervouchine@inbox.ru, Favorov, Alexander V.4 favorov@sensi.org, Mironov, Andrei A.2 mironov@bioinf.fbb.msu.ru
المصدر: Journal of Bioinformatics & Computational Biology. Apr2006, Vol. 4 Issue 2, p589-596. 8p. 2 Color Photographs.
مصطلحات موضوعية: *INTERNET servers, *ENZYME kinetics, *DYNAMIC programming, *MONTE Carlo method, *GIBBS' free energy, *BIOINFORMATICS