المؤلفون: Fausto Carnevale Neto (6116801), Daniel Raftery (186766)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Biotechnology, Sociology, Cancer, Inorganic Chemistry, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, NAP, unsupervised substructure discovery, MS 2 library search, MS 2 spectra, data preprocessing software, MS 2-based annotation, Integrated Mass Spectral Similarity., MS 2-based fragmentation studies, ClassyFire chemical ontology, metabolite annotation, Urinary Metabolite Annotation, MSI, orthogonal annotation methods, 2LDA, metabolomics standards initiative, silico tool network annotation prop., ESI, MS 2 library searches

Relation: https://figshare.com/articles/journal_contribution/Expanding_Urinary_Metabolite_Annotation_through_Integrated_Mass_Spectral_Similarity_Networking/16455372

الاتاحة: https://doi.org/10.1021/acs.analchem.1c02041.s001

المؤلفون: Alexander Eng (3713107), Hillary S. Hayden (8339445), Christopher E. Pope (8339433), Mitchell J. Brittnacher (164416), Anh T. Vo (8339439), Eli J. Weiss (3155757), Kyle R. Hager (8339436), Daniel H. Leung (8832056), Sonya L. Heltshe (3155748), Daniel Raftery (186766), Samuel I. Miller (127261), Lucas R. Hoffman (8339448), Elhanan Borenstein (11438773)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Biotechnology, Ecology, Cancer, Chemical Sciences not elsewhere classified, Cystic fibrosis, Fecal microbiome, Metagenomics, Metabolomics, Infants, Nutrition

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_Infants_with_cystic_fibrosis_have_altered_fecal_functional_capacities_with_potential_clinical_and_metabolic_consequences/16625506

الاتاحة: https://doi.org/10.6084/m9.figshare.16625506.v1

المؤلفون: Alexander Eng (3713107), Hillary S. Hayden (8339445), Christopher E. Pope (8339433), Mitchell J. Brittnacher (164416), Anh T. Vo (8339439), Eli J. Weiss (3155757), Kyle R. Hager (8339436), Daniel H. Leung (8832056), Sonya L. Heltshe (3155748), Daniel Raftery (186766), Samuel I. Miller (127261), Lucas R. Hoffman (8339448), Elhanan Borenstein (11438773)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Biotechnology, Ecology, Cancer, Chemical Sciences not elsewhere classified, Cystic fibrosis, Fecal microbiome, Metagenomics, Metabolomics, Infants, Nutrition

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Infants_with_cystic_fibrosis_have_altered_fecal_functional_capacities_with_potential_clinical_and_metabolic_consequences/16625509

الاتاحة: https://doi.org/10.6084/m9.figshare.16625509.v1

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/journal_contribution/A_PDF_file_containing_the_complete_original_WB_images_used_as_sources_of_WB_data_depicted_in_this_report_/16838613

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s012

المؤلفون: Baolong Su (11540366), Lisa F. Bettcher (10099320), Wei-Yuan Hsieh (11540369), Daniel Hornburg (1998733), Mackenzie J. Pearson (11540372), Niek Blomberg (11011536), Martin Giera (1598620), Michael P. Snyder (179108), Daniel Raftery (186766), Steven J. Bensinger (11540375), Kevin J. Williams (9369847)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Ecology, Sociology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, sub )­ classes, shotgun lipidomic analysis, sciex 5500 qtrap, lc system configured, direction infusion experiments, cannot take advantage, acyl tail characterization, expanded lipidomics analysis, lipidyzer platform remains, complex lipid sample, based lipidomics workflows, based shotgun lipidomics, new lipidomics standards, lipidyzer workflow manager, quantitative lipidomics, based application, subtracting lipid, standards designed, lipidyzer software, standard mrms, sla provides

Relation: https://figshare.com/articles/journal_contribution/A_DMS_Shotgun_Lipidomics_Workflow_Application_to_Facilitate_High-Throughput_Comprehensive_Lipidomics/16777970

الاتاحة: https://doi.org/10.1021/jasms.1c00203.s001

المؤلفون: G. A. Nagana Gowda (8661834), Vadim Pascua (11613750), Daniel Raftery (186766)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Physiology, Pharmacology, Sociology, Cancer, Computational Biology, Environmental Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, ubiquitous cellular antioxidant, spontaneously gets converted, nuclear magnetic resonance, including mass spectrometry, global metabolite profiling, free radical injury, 4620 − 4627, based blood metabolomics, biological mixtures since, presented method broadens, human whole blood, blood metabolites using, 1 , oxidized glutathione glutathione, important antioxidants gsh, human blood, oxidized glutathione, n <

Relation: https://figshare.com/articles/journal_contribution/Extending_the_Scope_of_sup_1_sup_H_NMR-Based_Blood_Metabolomics_for_the_Analysis_of_Labile_Antioxidants_Reduced_and_Oxidized_Glutathione/16887999

الاتاحة: https://doi.org/10.1021/acs.analchem.1c03763.s002

المؤلفون: Mohan Ghorasaini (8947529), Yassene Mohammed (719385), Jerzy Adamski (127482), Lisa Bettcher (5170454), John A. Bowden (1813099), Matias Cabruja (11789919), Kévin Contrepois (2263021), Mathew Ellenberger (11789922), Bharat Gajera (11789925), Mark Haid (4623739), Daniel Hornburg (1998733), Christie Hunter (2118493), Christina M. Jones (1784698), Theo Klein (2644057), Oleg Mayboroda (11789928), Mina Mirzaian (302133), Ruin Moaddel (442934), Luigi Ferrucci (150038), Jacqueline Lovett (4014875), Kenneth Nazir (11789931), Mackenzie Pearson (3605453), Baljit K. Ubhi (1740523), Daniel Raftery (186766), Fabien Riols (11789934), Rebekah Sayers (11789937), Eric J. G. Sijbrands (10761933), Michael P. Snyder (179108), Baolong Su (11540366), Vidya Velagapudi (152739), Kevin J. Williams (9369847), Yolanda B. de Rijke (3220266), Martin Giera (1598620)

مصطلحات موضوعية: Biochemistry, Biotechnology, Science Policy, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, throughput clinical setting, potentially disease relevant, lipid class separation, highly reproducible analysis, frozen human plasma, employed lipidyzer platform, differential mobility spectrometry, clinical cohort study, american plasma ), automated informatics approach, quantitative lipidomics platform, dyer approach, utmost importance, translational research, related materials, provide evidence, practical methyl, lipidomics discoveries, familial hypercholesterolemia, classic bligh

Relation: https://figshare.com/articles/journal_contribution/Cross-Laboratory_Standardization_of_Preclinical_Lipidomics_Using_Differential_Mobility_Spectrometry_and_Multiple_Reaction_Monitoring/17121894

الاتاحة: https://doi.org/10.1021/acs.analchem.1c02826.s001

المؤلفون: G. A. Nagana Gowda (8661834), Natalie N. Hong (10097270), Daniel Raftery (186766)

مصطلحات موضوعية: Biochemistry, Medicine, Molecular Biology, Physiology, Pharmacology, Biotechnology, Immunology, Developmental Biology, Hematology, Environmental Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, plasma, metabolite, TSP, blood sample matrix, DSS, fumaric acid, MS, Protein Precipitated Plasma, maleic acid, serum, NMR spectroscopy, quantitation

Relation: https://figshare.com/articles/journal_contribution/Evaluation_of_Fumaric_Acid_and_Maleic_Acid_as_Internal_Standards_for_NMR_Analysis_of_Protein_Precipitated_Plasma_Serum_and_Whole_Blood/13713179

الاتاحة: https://doi.org/10.1021/acs.analchem.0c04766.s001

المؤلفون: Kathryn A. Jewett (3756811), Ruth E. Thomas (9291319), Chi Q. Phan (10099314), Bernice Lin (10099317), Gillian Milstein (6508511), Selina Yu (250685), Lisa F. Bettcher (10099320), Fausto Carnevale Neto (6116801), Danijel Djukovic (1763815), Daniel Raftery (186766), Leo J. Pallanck (9291325), Marie Y. Davis (10099323)

مصطلحات موضوعية: Biochemistry, Genetics, Neuroscience, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, GBA mutations influence pathogenesis, Muscle-specific GBA expression, Drosophila melanogaster model, brain protein aggregates, Neuronal GCase expression, protein aggregation, Gba 1b mutants, PD, Perturbing EV biogenesis, Gba 1b, disease progression, beta acid 1

Relation: https://figshare.com/articles/journal_contribution/Summary_of_Lifespans_in_Fig_1D_/13717311

الاتاحة: https://doi.org/10.1371/journal.pgen.1008859.s009

المؤلفون: Kathryn A. Jewett (3756811), Ruth E. Thomas (9291319), Chi Q. Phan (10099314), Bernice Lin (10099317), Gillian Milstein (6508511), Selina Yu (250685), Lisa F. Bettcher (10099320), Fausto Carnevale Neto (6116801), Danijel Djukovic (1763815), Daniel Raftery (186766), Leo J. Pallanck (9291325), Marie Y. Davis (10099323)

مصطلحات موضوعية: Biochemistry, Genetics, Neuroscience, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, GBA mutations influence pathogenesis, Muscle-specific GBA expression, Drosophila melanogaster model, brain protein aggregates, Neuronal GCase expression, protein aggregation, Gba 1b mutants, PD, Perturbing EV biogenesis, Gba 1b, disease progression, beta acid 1

Relation: https://figshare.com/articles/journal_contribution/Summary_of_Lifespans_in_Fig_2E_/13717314

الاتاحة: https://doi.org/10.1371/journal.pgen.1008859.s010

المؤلفون: Fausto Carnevale Neto (6116801), Daniel Raftery (186766)

مصطلحات موضوعية: Biochemistry, Medicine, Genetics, Biotechnology, Sociology, Cancer, Inorganic Chemistry, Plant Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, NAP, unsupervised substructure discovery, MS 2 library search, MS 2 spectra, data preprocessing software, MS 2-based annotation, Integrated Mass Spectral Similarity., MS 2-based fragmentation studies, ClassyFire chemical ontology, metabolite annotation, Urinary Metabolite Annotation, MSI, orthogonal annotation methods, 2LDA, metabolomics standards initiative, silico tool network annotation prop., ESI, MS 2 library searches

Relation: https://figshare.com/articles/dataset/Expanding_Urinary_Metabolite_Annotation_through_Integrated_Mass_Spectral_Similarity_Networking/16455375

الاتاحة: https://doi.org/10.1021/acs.analchem.1c02041.s002

المؤلفون: Alexander Eng (3713107), Hillary S. Hayden (8339445), Christopher E. Pope (8339433), Mitchell J. Brittnacher (164416), Anh T. Vo (8339439), Eli J. Weiss (3155757), Kyle R. Hager (8339436), Daniel H. Leung (8832056), Sonya L. Heltshe (3155748), Daniel Raftery (186766), Samuel I. Miller (127261), Lucas R. Hoffman (8339448), Elhanan Borenstein (11438773)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Biotechnology, Ecology, Cancer, Chemical Sciences not elsewhere classified, Cystic fibrosis, Fecal microbiome, Metagenomics, Metabolomics, Infants, Nutrition

Relation: https://figshare.com/articles/dataset/Additional_file_3_of_Infants_with_cystic_fibrosis_have_altered_fecal_functional_capacities_with_potential_clinical_and_metabolic_consequences/16625512

الاتاحة: https://doi.org/10.6084/m9.figshare.16625512.v1

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_1_/16838580

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s001

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_2_/16838583

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s002

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_3_/16838586

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s003

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_4_/16838589

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s004

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_5_/16838592

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s005

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_6_/16838595

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s006

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_7_/16838598

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s007

المؤلفون: Patrick A. Carroll (11586792), Brian W. Freie (11586795), Pei Feng Cheng (11586798), Sivakanthan Kasinathan (11586801), Haiwei Gu (1461157), Theresa Hedrich (11586804), James A. Dowdle (11586807), Vivek Venkataramani (5903726), Vijay Ramani (1814338), Xiaoying Wu (695037), Daniel Raftery (186766), Jay Shendure (814), Donald E. Ayer (9733888), Charles H. Muller (9914592), Robert N. Eisenman (11586810)

مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Physiology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, sensing transcription factor, proximal myc network, like protein x, including metabolic targets, binding partner mondoa, specific gc transcripts, specific gc development, male germ line, male germ cell, multiple stress pathways, div >< p, male fertility, prone process, obligate components, metabolically driven, apoptotic effectors

Relation: https://figshare.com/articles/figure/_goes_with_Fig_8_/16838601

الاتاحة: https://doi.org/10.1371/journal.pbio.3001085.s008