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1Academic Journal
المؤلفون: Jonathan M Philpott, Rajesh Narasimamurthy, Clarisse G Ricci, Alfred M Freeberg, Sabrina R Hunt, Lauren E Yee, Rebecca S Pelofsky, Sarvind Tripathi, David M Virshup, Carrie L Partch
المصدر: eLife, Vol 9 (2020)
مصطلحات موضوعية: in vitro biochemistry, human cell culture, mouse cell culture, protiens, Medicine, Science, Biology (General), QH301-705.5
وصف الملف: electronic resource
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2Academic Journal
المؤلفون: Clarisse G. Ricci, Janice S. Chen, Yinglong Miao, Martin Jinek, Jennifer A. Doudna, J. Andrew McCammon, Giulia Palermo
المصدر: ACS Central Science, Vol 5, Iss 4, Pp 651-662 (2019)
Relation: https://doi.org/10.1021/acscentsci.9b00020; https://doaj.org/toc/2374-7951; https://doaj.org/article/081cc12949eb4f1ea40fa9fbc42575d1
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3
المؤلفون: Zirui Zhang, Clarisse G. Ricci, Bo Li, J. Andrew McCammon, Chao Fan, Li-Tien Cheng
المصدر: J Chem Theory Comput
Journal of chemical theory and computation, vol 17, iss 4مصطلحات موضوعية: Work (thermodynamics), Implicit solvation, Monte Carlo method, Molecular Dynamics Simulation, 01 natural sciences, Article, Computer Software, Molecular dynamics, symbols.namesake, Theoretical and Computational Chemistry, 0103 physical sciences, Statistical physics, Physical and Theoretical Chemistry, Physics, Quantitative Biology::Biomolecules, Chemical Physics, 010304 chemical physics, Solvation, Proteins, Water, Computer Science Applications, Biomolecular complex, Solvents, symbols, Thermodynamics, Biochemistry and Cell Biology, Granularity, van der Waals force, Monte Carlo Method
وصف الملف: application/pdf
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4
المؤلفون: Jonathan M. Philpott, Alfred M. Freeberg, Jiyoung Park, Kwangjun Lee, Clarisse G. Ricci, Sabrina R. Hunt, Rajesh Narasimamurthy, David H. Segal, Rafael Robles, Yao D. Cai, Sarvind Tripathi, J. Andrew McCammon, David M. Virshup, Joanna C. Chiu, Choogon Lee, Carrie L. Partch
مصطلحات موضوعية: Cell Biology, Molecular Biology
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5Academic Journal
المؤلفون: Melina Mottin, Paulo C. T. Souza, Clarisse G. Ricci, Munir S. Skaf
المصدر: International Journal of Molecular Sciences, Vol 18, Iss 1, p 15 (2016)
مصطلحات موضوعية: PPARγ ligands, nuclear receptor, CHARMM parameters, molecular dynamics, GQ16, SR1664, Biology (General), QH301-705.5, Chemistry, QD1-999
Relation: http://www.mdpi.com/1422-0067/18/1/15; https://doaj.org/toc/1422-0067; https://doaj.org/article/d128590c34b94f4780556de75756a81c
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6
المؤلفون: Clarisse G. Ricci, James Andrew McCammon
المصدر: The Journal of Physical Chemistry B. 122:11695-11701
مصطلحات موضوعية: Biophysics, Molecular Dynamics Simulation, 010402 general chemistry, 01 natural sciences, Article, Molecular dynamics, Ribonucleases, Bacterial Proteins, 0103 physical sciences, Amphiphile, Materials Chemistry, Humans, Dewetting, Physical and Theoretical Chemistry, Solubility, 010304 chemical physics, Chemistry, Protein protein, Solvation, Water, Proto-Oncogene Proteins c-mdm2, 0104 chemical sciences, Surfaces, Coatings and Films, Hydrophobic surfaces, Chemical physics, Solvents, Water chemistry, Hydrophobic and Hydrophilic Interactions, Protein Binding
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المؤلفون: Rajesh Narasimamurthy, Jonathan M. Philpott, Rebecca S. Pelofsky, Alfred M. Freeberg, Sarvind Tripathi, Carrie L. Partch, Clarisse G. Ricci, Lauren E. Yee, David M. Virshup, Sabrina R. Hunt
المصدر: eLife
eLife, Vol 9 (2020)مصطلحات موضوعية: 0301 basic medicine, Mouse, Structural Biology and Molecular Biophysics, Conserved sequence, 0302 clinical medicine, structural biology, Biology (General), Phosphorylation, Casein Kinase I, Kinase, Chemistry, General Neuroscience, Period Circadian Proteins, General Medicine, Circadian Rhythm, Cell biology, PER2, mouse cell culture, in vitro biochemistry, Medicine, Drosophila, Casein kinase 1, Sleep Research, Research Article, Human, QH301-705.5, Science, 1.1 Normal biological development and functioning, Period (gene), Allosteric regulation, Molecular Dynamics Simulation, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, Allosteric Regulation, Underpinning research, molecular biophysics, Animals, Humans, human, Kinase activity, Anion binding, mouse, human cell culture, General Immunology and Microbiology, protiens, HEK293 Cells, 030104 developmental biology, Generic health relevance, Biochemistry and Cell Biology, Other, 030217 neurology & neurosurgery
وصف الملف: application/pdf
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8
المؤلفون: Sarvind Tripathi, Rebecca S. Pelofsky, Clarisse G. Ricci, Rajesh Narasimamurthy, Carrie L. Partch, Alfred M. Freeberg, Jonathan M. Philpott, Lauren E. Yee, David M. Virshup, Sabrina R. Hunt
مصطلحات موضوعية: PER2, Chemistry, Biophysics, Substrate (chemistry), Casein kinase 1, Circadian rhythm, Selectivity
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9
المؤلفون: J. Andrew McCammon, Yinglong Miao, Jennifer A. Doudna, Martin Jinek, Clarisse G. Ricci, Giulia Palermo, Janice S. Chen
المساهمون: University of Zurich, Palermo, Giulia
المصدر: ACS central science, vol 5, iss 4
ACS Central Science, Vol 5, Iss 4, Pp 651-662 (2019)مصطلحات موضوعية: Base pair, 1.1 Normal biological development and functioning, General Chemical Engineering, 610 Medicine & health, 1600 General Chemistry, Computational biology, 010402 general chemistry, 01 natural sciences, chemistry.chemical_compound, Genetics, 10019 Department of Biochemistry, CRISPR, Nucleic acid structure, 1500 General Chemical Engineering, QD1-999, 010405 organic chemistry, Cas9, Chemistry, RNA, General Chemistry, 0104 chemical sciences, Protospacer adjacent motif, Chemical Sciences, 570 Life sciences, biology, Generic health relevance, DNA, Heteroduplex
وصف الملف: Ricci_et_al._2019.pdf - application/pdf; application/pdf
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10
المؤلفون: Giulia, Palermo, Clarisse G, Ricci, J Andrew, McCammon
المصدر: Physics today, vol 72, iss 4
مصطلحات موضوعية: General Physics, Physical Sciences, Genetics, Generic health relevance, Article, Mathematical Sciences, Cancer
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11
المصدر: Biophysical Journal. 120:307a
مصطلحات موضوعية: Casein Kinase 1 delta, Period (gene), Biophysics, Biology, Cell biology
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12
المؤلفون: Carrie L. Partch, Lauren E. Yee, Rebecca S. Pelofsky, Clarisse G. Ricci, Rajesh Narasimamurthy, Sarvind Tripathi, Alfred M. Freeberg, Jonathan M. Philpott, David M. Virshup, Sabrina R. Hunt
المصدر: Biophysical Journal. 118:207a-208a
مصطلحات موضوعية: Delta, Biophysics, Energy landscape, Circadian rhythm, Casein kinase 1, Biology, Cell biology
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13
المؤلفون: Elizabeth A. Komives, Clarisse G. Ricci, Wei Chen, Dominic Narang
المصدر: Journal of molecular biology, vol 430, iss 10
مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Biochemistry & Molecular Biology, Protein Conformation, 1.1 Normal biological development and functioning, Molecular Dynamics Simulation, Mass spectrometry, Closed conformation, 01 natural sciences, Microbiology, Article, Nuclear factor kappa b, 03 medical and health sciences, chemistry.chemical_compound, Molecular dynamics, Mice, Medicinal and Biomolecular Chemistry, Structural Biology, Models, Underpinning research, 0103 physical sciences, Genetics, Animals, DNA binding, Molecular Biology, Transcription factor, transcription factor, Binding Sites, 010304 chemical physics, Transcription Factor RelA, Deuterium Exchange Measurement, Molecular, NF-kappa B p50 Subunit, DNA, Receptor–ligand kinetics, molecular dynamics, 030104 developmental biology, chemistry, Multiprotein Complexes, amide exchange, Biophysics, Generic health relevance, Biochemistry and Cell Biology, Protein Multimerization, Protein Binding
وصف الملف: application/pdf
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14
المؤلفون: J. Andrew McCammon, Clarisse G. Ricci, Ivan Rivalta, Jennifer A. Doudna, Giulia Palermo, Martin Jinek, Janice S. Chen, Victor S. Batista
المساهمون: Palermo, Giulia, Chen, Janice S., Ricci, Clarisse G., Rivalta, Ivan, Jinek, Martin, Batista, Victor S., Doudna, Jennifer A., McCammon, J Andrew, Laboratoire de Chimie - UMR5182 (LC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)-Institut de Chimie du CNRS (INC), University of Zurich
المصدر: Quarterly Reviews of Biophysics
Quarterly Reviews of Biophysics, 2018, 51, ⟨10.1017/S0033583518000070⟩
Quarterly Reviews of Biophysics, Cambridge University Press (CUP), 2018, 51, ⟨10.1017/S0033583518000070⟩
Quarterly reviews of biophysics
Palermo, Giulia; Chen, Janice S; Ricci, Clarisse G; Rivalta, Ivan; Jinek, Martin; Batista, Victor S; et al.(2018). Key role of the REC lobe during CRISPR-Cas9 activation by 'sensing', 'regulating', and 'locking' the catalytic HNH domain.. Quarterly reviews of biophysics, 51, e9. doi: 10.1017/s0033583518000070. UC Riverside: Retrieved from: http://www.escholarship.org/uc/item/42s679jxمصطلحات موضوعية: 0301 basic medicine, 1.1 Normal biological development and functioning, Biophysics, 610 Medicine & health, Computational biology, Molecular Dynamics Simulation, protein/nucleic acid interactions, CRISPR–Cas9, Structural remodeling, Article, protein/nucleic acid interaction, 03 medical and health sciences, Endonuclease, Genome editing, Dna cleavage, Underpinning research, Catalytic Domain, CRISPR-Associated Protein 9, 10019 Department of Biochemistry, Genetics, CRISPR, Humans, genome editing, Clustered Regularly Interspaced Short Palindromic Repeats, DNA Cleavage, ComputingMilieux_MISCELLANEOUS, Gene Editing, Principal Component Analysis, biology, Cas9, Chemistry, molecular dynamic, Palindrome, molecular dynamics, [CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry, Other Physical Sciences, 030104 developmental biology, Nucleic acid, biology.protein, 570 Life sciences, Generic health relevance, Biochemistry and Cell Biology, CRISPR-Cas Systems, CRISPR-Cas9, 1304 Biophysics
وصف الملف: STAMPA; application/pdf; key_role_of_the_rec_lobe_during_crisprcas9_activation_by_sensing_regulating_and_locking_the_catalytic_hnh_domain.pdf - application/pdf; Palermo_et_al._2018.pdf - application/pdf
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المؤلفون: J. Andrew McCammon, Ivan Rivalta, Amendra Fernando, Giulia Palermo, Clarisse G. Ricci, Rajshekhar Basak, Victor S. Batista, Martin Jinek
المساهمون: Laboratoire de Chimie - UMR5182 (LC), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)-Institut de Chimie du CNRS (INC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Palermo, Giulia, Ricci, Clarisse G., Fernando, Amendra, Basak, Rajshekhar, Jinek, Martin, Rivalta, Ivan, Batista, Victor S., McCammon, J. Andrew
المصدر: Journal of the American Chemical Society, vol 139, iss 45
Journal of the American Chemical Society
Journal of the American Chemical Society, American Chemical Society, 2017, 139 (45), pp.16028-16031. ⟨10.1021/jacs.7b05313⟩
Journal of the American Chemical Society, 2017, 139 (45), pp.16028-16031. ⟨10.1021/jacs.7b05313⟩
Palermo, G; Ricci, CG; Fernando, A; Basak, R; Jinek, M; Rivalta, I; et al.(2017). Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 139(45), 16028-16031. doi: 10.1021/jacs.7b05313. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/6bm273z1مصطلحات موضوعية: 0301 basic medicine, 1.1 Normal biological development and functioning, Allosteric regulation, CRISPR-Associated Proteins, Clustered Regularly Interspaced Short Palindromic Repeat, Molecular Dynamics Simulation, Biochemistry, Catalysis, Catalysi, 03 medical and health sciences, chemistry.chemical_compound, Endonuclease, Colloid and Surface Chemistry, Genome editing, Allosteric Regulation, Catalytic Domain, parasitic diseases, Genetics, CRISPR, CRISPR-Cas System, Clustered Regularly Interspaced Short Palindromic Repeats, DNA Cleavage, ComputingMilieux_MISCELLANEOUS, Gene Editing, biology, Cas9, Communication, Chemistry (all), CRISPR-Associated Protein, General Chemistry, Endonucleases, Molecular biology, Cell biology, [CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry, Enzyme Activation, Protospacer adjacent motif, 030104 developmental biology, Allosteric enzyme, chemistry, Chemical Sciences, biology.protein, CRISPR-Cas Systems, DNA, Biotechnology
وصف الملف: application/pdf; STAMPA
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المصدر: Chemical biology & drug design, vol 91, iss 6
Venkatramani, A; Ricci, CG; Oldfield, E; & McCammon, JA. (2018). Remarkable similarity in Plasmodium falciparum and Plasmodium vivax geranylgeranyl diphosphate synthase dynamics and its implication for antimalarial drug design. CHEMICAL BIOLOGY & DRUG DESIGN, 91(6), 1068-1077. doi: 10.1111/cbdd.13170. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/113679xzمصطلحات موضوعية: 0301 basic medicine, Gaussian accelerated molecular dynamics simulations, Plasmodium vivax, Protozoan Proteins, 01 natural sciences, Biochemistry, Drug Discovery, chemistry.chemical_classification, 010304 chemical physics, biology, Chemistry, Infectious Diseases, 5.1 Pharmaceuticals, Molecular Medicine, Infection, Protein Structure, Medicinal & Biomolecular Chemistry, Plasmodium falciparum, Biophysics, Sequence alignment, Molecular Dynamics Simulation, Article, 03 medical and health sciences, Antimalarials, Rare Diseases, 0103 physical sciences, parasitic diseases, Farnesyltranstransferase, Homology modeling, homology model, Amino Acid Sequence, Binding site, Pharmacology, Binding Sites, Organic Chemistry, molecular dynamics simulations, biology.organism_classification, Malaria, Protein Structure, Tertiary, Vector-Borne Diseases, 030104 developmental biology, Enzyme, GGPPS, Orphan Drug, Drug Design, Protein prenylation, Biochemistry and Cell Biology, Sequence Alignment, Tertiary
وصف الملف: application/pdf
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17
المؤلفون: João R. C. Muniz, Andre S. Godoy, Igor Polikarpov, Nili M Parekh, Daniela B. B. Trivella, Paulo C. T. Souza, Clarisse G. Ricci, Stephen D. Ayers, Peter S. Reinach, Paul Webb, Munir S. Skaf, Amanda Bernardes
المساهمون: Molecular Dynamics
المصدر: Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Journal of Molecular Biology, 425(16), 2878-2893. Academic Pressمصطلحات موضوعية: Models, Molecular, STRUCTURAL BASIS, crystal structure, Protein Conformation, medicine.drug_class, Anti-Inflammatory Agents, INFLAMMATION CONTROL, Peroxisome proliferator-activated receptor, Fibrate, Molecular Dynamics Simulation, Biology, Crystallography, X-Ray, PPARα, CRISTALOGRAFIA ESTRUTURAL, ALPHA/GAMMA AGONISTS, DUAL AGONISTS, Structural Biology, PPAR-GAMMA LIGAND, medicine, Humans, PPAR alpha, RETINOIC ACID RECEPTOR, Receptor, Molecular Biology, Transcription factor, Cells, Cultured, chemistry.chemical_classification, BINDING DOMAIN, Dose-Response Relationship, Drug, Interleukin-6, DYNAMICS SIMULATIONS, Interleukin-8, Ligand (biochemistry), dry eye disease, molecular dynamics, Kinetics, Retinoic acid receptor, Pyrimidines, SELECTIVITY, chemistry, Biochemistry, Nuclear receptor, THYROID-HORMONE RECEPTORS, protein and ligand interaction, Binding domain
وصف الملف: application/pdf
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المصدر: Journal of molecular biology, vol 429, iss 7
مصطلحات موضوعية: 0301 basic medicine, Models, Molecular, Biochemistry & Molecular Biology, IκB kinase, Protein Conformation, 1.1 Normal biological development and functioning, Allosteric regulation, amide hydrogen/deuterium exchange, Microbiology, Models, Biological, Mass Spectrometry, Article, Rel homology domain, Medicinal and Biomolecular Chemistry, 03 medical and health sciences, chemistry.chemical_compound, NF-KappaB Inhibitor alpha, Models, Underpinning research, Structural Biology, Transcriptional regulation, NLS, Humans, Molecular Biology, allostery, 030102 biochemistry & molecular biology, Chemistry, NF-kappa B, Molecular, DNA, Biological, IκBα, 030104 developmental biology, Biochemistry, Biophysics, Generic health relevance, Biochemistry and Cell Biology, transcription regulation, Nuclear localization sequence, Protein Binding
وصف الملف: application/pdf
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19
المؤلفون: J. Andrew McCammon, Clarisse G. Ricci, Eric Oldfield, Yi Liang Liu, Wei Zhu, Yang Wang, Yonghui Zhang
المصدر: Ricci, CG; Liu, Y-L; Zhang, Y; Wang, Y; Zhu, W; Oldfield, E; et al.(2016). Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase. BIOCHEMISTRY, 55(36), 5180-5190. doi: 10.1021/acs.biochem.6b00398. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/05h8h93q
Biochemistry, vol 55, iss 36مصطلحات موضوعية: 0301 basic medicine, Plasmodium vivax, Drug target, Pharmacology, Medical Biochemistry and Metabolomics, Crystallography, X-Ray, 01 natural sciences, Biochemistry, Enzyme Inhibitors, media_common, chemistry.chemical_classification, Principal Component Analysis, Crystallography, 010304 chemical physics, biology, Infectious Diseases, 5.1 Pharmaceuticals, 6.1 Pharmaceuticals, Thermodynamics, medicine.symptom, Development of treatments and therapeutic interventions, Infection, Geranylgeranyl-diphosphate synthase, Biotechnology, Drug, Biochemistry & Molecular Biology, media_common.quotation_subject, Molecular Dynamics Simulation, Article, 03 medical and health sciences, Antimalarials, Medicinal and Biomolecular Chemistry, Rare Diseases, 0103 physical sciences, medicine, Farnesyltranstransferase, Binding Sites, Evaluation of treatments and therapeutic interventions, biology.organism_classification, medicine.disease, Malaria, Vector-Borne Diseases, 030104 developmental biology, Enzyme, Orphan Drug, Good Health and Well Being, Mechanism of action, chemistry, X-Ray, Biochemistry and Cell Biology, Function (biology)
وصف الملف: application/pdf
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المساهمون: Laboratoire de Chimie - UMR5182 (LC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Univ Estadual Campinas, Inst Chem, BR-13084862 Sao Paulo, Brazil, Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)-Institut de Chimie du CNRS (INC)
المصدر: Scientific Reports
Scientific Reports, 2016, 6 (1), pp.19940. ⟨10.1038/srep19940⟩
Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.19940. ⟨10.1038/srep19940⟩مصطلحات موضوعية: Models, Molecular, 0301 basic medicine, Protein Conformation, Allosteric regulation, Quantitative Structure-Activity Relationship, Peroxisome proliferator-activated receptor, Retinoid X receptor, Article, 03 medical and health sciences, 0302 clinical medicine, Allosteric Regulation, [CHIM]Chemical Sciences, Protein Interaction Domains and Motifs, Transcription factor, ComputingMilieux_MISCELLANEOUS, chemistry.chemical_classification, Retinoid X Receptor alpha, Multidisciplinary, biology, Retinoid X receptor alpha, DNA, 3. Good health, Cell biology, PPAR gamma, [CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry, 030104 developmental biology, Biochemistry, Allosteric enzyme, chemistry, Nuclear receptor, Multiprotein Complexes, biology.protein, Protein Multimerization, Allosteric Site, 030217 neurology & neurosurgery, Protein Binding, Binding domain
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