المؤلفون: Ciccolella, Simone, Denti, Luca, Avila Cartes, Jorge, Della Vedova, Gianluca, Pirola, Yuri, Rizzi, Raffaella, Bonizzoni, Paola

المساهمون: European Union’s Horizon 2020 Research and Innovation Staff Exchange programme, Union’s Horizon 2020 Research and innovation programme under the Marie Skłodowska-Curie, MIUR, Università degli Studi di Milano - Bicocca

المصدر: Neural Computing and Applications ; ISSN 0941-0643 1433-3058

الاتاحة: https://doi.org/10.1007/s00521-025-10992-2
https://link.springer.com/content/pdf/10.1007/s00521-025-10992-2.pdf
https://link.springer.com/article/10.1007/s00521-025-10992-2/fulltext.html

المؤلفون: Chourasia, Prakash, Ali, Sarwan, Ciccolella, Simone, Della Vedova, Gianluca, Patterson, Murray

مصطلحات موضوعية: Quantitative Biology - Quantitative Methods, Computer Science - Machine Learning, Quantitative Biology - Genomics

URL الوصول: http://arxiv.org/abs/2211.08267

المؤلفون: Avila Cartes, Jorge, Bonizzoni, Paola, Ciccolella, Simone, Della Vedova, Gianluca, Denti, Luca

المساهمون: Avila Cartes, J, Bonizzoni, P, Ciccolella, S, Della Vedova, G, Denti, L

مصطلحات موضوعية: Integer linear programming, Maximal block, Pangenome graph, Variation graph construction

وصف الملف: ELETTRONICO

Relation: info:eu-repo/semantics/altIdentifier/pmid/39497039; info:eu-repo/semantics/altIdentifier/wos/WOS:001348653100002; volume:25; issue:1; journal:BMC BIOINFORMATICS; https://hdl.handle.net/10281/524779

الاتاحة: https://hdl.handle.net/10281/524779
https://doi.org/10.1186/s12859-024-05958-5

المؤلفون: Avila Cartes, Jorge, Bonizzoni, Paola, Ciccolella, Simone, Della Vedova, Gianluca, Denti, Luca, Didelot, Xavier, Monti, Davide, Pirola, Yuri, Valencia, Alfonso

مصطلحات موضوعية: Q Science (General), QA76 Electronic computers. Computer science. Computer software, QH Natural history, QR Microbiology

وصف الملف: application/pdf

Relation: https://wrap.warwick.ac.uk/id/eprint/185399/1/btae292.pdf; Avila Cartes, Jorge, Bonizzoni, Paola, Ciccolella, Simone, Della Vedova, Gianluca, Denti, Luca, Didelot, Xavier, Monti, Davide, Pirola, Yuri and Valencia, Alfonso (2024) RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics, 40 (5). btae292. doi:10.1093/bioinformatics/btae292 ISSN 1367-4803.

الاتاحة: https://wrap.warwick.ac.uk/id/eprint/185399/
https://wrap.warwick.ac.uk/id/eprint/185399/1/btae292.pdf
https://doi.org/10.1093/bioinformatics/btae292

المؤلفون: Ciccolella, Simone¹ (AUTHOR), Cozzi, Davide¹ (AUTHOR), Della Vedova, Gianluca¹ (AUTHOR), Kuria, Stephen Njuguna² (AUTHOR), Bonizzoni, Paola¹ (AUTHOR), Denti, Luca^1,3 (AUTHOR) luca.denti@unimib.it

المصدر: PLoS Computational Biology. 12/9/2024, Vol. 20 Issue 12, p1-19. 19p.

مصطلحات موضوعية: *ALTERNATIVE RNA splicing, *GENETIC variation, *PAN-genome, *GENETIC code, *GENOMES

المؤلفون: Ciccolella, Simone, Della Vedova, Gianluca, Filipović, Vladimir, Soto Gomez, Mauricio

المساهمون: S. Ciccolella, G. Della Vedova, V. Filipović, M. Soto Gomez

مصطلحات موضوعية: particle swarm optimization, genetic programming, variable neighbourhood search, cancer phylogeny, metaheuristic, Settore INF/01 - Informatica, Settore MAT/09 - Ricerca Operativa

Relation: info:eu-repo/semantics/altIdentifier/wos/WOS:001034736800001; volume:16; issue:7; firstpage:1; lastpage:20; numberofpages:20; journal:ALGORITHMS; https://hdl.handle.net/2434/985430; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85166025342

الاتاحة: https://hdl.handle.net/2434/985430
https://doi.org/10.3390/a16070333

المؤلفون: Avila Cartes, Jorge, Anand, Santosh, Ciccolella, Simone, Bonizzoni, Paola, Della Vedova, Gianluca

المساهمون: Horizon 2020 Framework Programme

المصدر: GigaScience ; volume 12 ; ISSN 2047-217X

الاتاحة: http://dx.doi.org/10.1093/gigascience/giac119
https://academic.oup.com/gigascience/article-pdf/doi/10.1093/gigascience/giac119/48437825/giac119.pdf

المؤلفون: Ciccolella, Simone, Bernardini, Giulia, Denti, Luca, Bonizzoni, Paola, Previtali, Marco, Vedova, Gianluca Della

المساهمون: Ciccolella, Simone, Bernardini, Giulia, Denti, Luca, Bonizzoni, Paola, Previtali, Marco, Vedova, Gianluca Della

مصطلحات موضوعية: Tumor phylogeny, similarity measure, tree distance

Relation: info:eu-repo/semantics/altIdentifier/pmid/32730595; info:eu-repo/semantics/altIdentifier/wos/WOS:000649439900005; volume:37; issue:2 (January 2021); firstpage:178; lastpage:184; numberofpages:7; journal:BIOINFORMATICS; http://hdl.handle.net/11368/3019663; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85105693544; https://academic.oup.com/bioinformatics/article/37/2/178/5878956#235897402

الاتاحة: http://hdl.handle.net/11368/3019663
https://doi.org/10.1093/bioinformatics/btaa676
https://academic.oup.com/bioinformatics/article/37/2/178/5878956#235897402

المؤلفون: Ciccolella, Simone, Ricketts, Camir, Soto Gomez, Mauricio, Patterson, Murray, Silverbush, Dana, Bonizzoni, Paola, Hajirasouliha, Iman, Della Vedova, Gianluca

المساهمون: Ciccolella, S, Ricketts, C, Soto Gomez, M, Patterson, M, Silverbush, D, Bonizzoni, P, Hajirasouliha, I, Della Vedova, G

مصطلحات موضوعية: Cancer, Phylogeny

Relation: info:eu-repo/semantics/altIdentifier/pmid/32805010; info:eu-repo/semantics/altIdentifier/wos/WOS:000667755400006; volume:37; issue:3 (1 February 2021); firstpage:326; lastpage:333; numberofpages:8; journal:BIOINFORMATICS; http://hdl.handle.net/10281/283571; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85097315766

الاتاحة: http://hdl.handle.net/10281/283571
https://doi.org/10.1093/bioinformatics/btaa722

المؤلفون: Ciccolella, Simone, Denti, Luca, Bonizzoni, Paola, Della Vedova, Gianluca, Pirola, Yuri, Previtali, Marco

المساهمون: Università degli Studi di Milano-Bicocca, H2020 Marie Sklodowska-Curie Actions

المصدر: BMC Bioinformatics ; volume 22, issue S15 ; ISSN 1471-2105

الاتاحة: http://dx.doi.org/10.1186/s12859-022-04668-0
https://link.springer.com/content/pdf/10.1186/s12859-022-04668-0.pdf
https://link.springer.com/article/10.1186/s12859-022-04668-0/fulltext.html

المؤلفون: Ciccolella, Simone, Cozzi, Davide, Della Vedova, Gianluca, Kuria, Stephen, BONIZZONI, PAOLA, DENTI, LUCA

Relation: https://doi.org/10.5281/zenodo.13740101; https://doi.org/10.5281/zenodo.13740102; oai:zenodo.org:13740102

الاتاحة: https://doi.org/10.5281/zenodo.13740102

المؤلفون: Cartes, Jorge Avila, Bonizzoni, Paola, Ciccolella, Simone, Vedova, Gianluca Della, Denti, Luca, Didelot, Xavier, Monti, Davide Cesare, Pirola, Yuri

المصدر: Bioinformatics; May2024, Vol. 40 Issue 5, p1-11, 11p

مصطلحات موضوعية: BACTERIAL genomes, SEQUENCE alignment, PAN-genome, DYNAMIC programming, HOMOLOGY (Biology)

المؤلفون: Ciccolella, Simone, Soto Gomez, Mauricio, Patterson, Murray D, Della Vedova, Gianluca, Hajirasouliha, Iman, Bonizzoni, Paola

المساهمون: S. Ciccolella, M. Soto Gomez, M.D. Patterson, G. Della Vedova, I. Hajirasouliha, P. Bonizzoni

مصطلحات موضوعية: hill climbing, integer linear programming, phylogeny, single cell sequencing, Settore INF/01 - Informatica, Settore MAT/09 - Ricerca Operativa

Relation: info:eu-repo/semantics/altIdentifier/pmid/33297943; info:eu-repo/semantics/altIdentifier/wos/WOS:000600106400003; IEEE International Conference on Computational Advances in Bio and medical Sciences (IEEE ICCABS); volume:21; issue:suppl. 1; firstpage:1; lastpage:16; numberofpages:16; journal:BMC BIOINFORMATICS; https://hdl.handle.net/2434/961445; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85097314706

الاتاحة: https://hdl.handle.net/2434/961445
https://doi.org/10.1186/s12859-020-03736-7

المؤلفون: Malikic, Salem, Mehrabadi, Farid Rashidi, Ciccolella, Simone, Rahman, Md. Khaledur, Ricketts, Camir, Haghshenas, Ehsan, Seidman, Daniel, Hach, Faraz, Hajirasouliha, Iman, Sahinalp, S. Cenk

مصطلحات موضوعية: METHOD

وصف الملف: text/html

Relation: http://genome.cshlp.org/cgi/content/short/29/11/1860; http://dx.doi.org/10.1101/gr.234435.118

الاتاحة: http://genome.cshlp.org/cgi/content/short/29/11/1860
https://doi.org/10.1101/gr.234435.118

المؤلفون: Chourasia, Prakash, Ali, Sarwan, Ciccolella, Simone, Vedova, Gianluca Della, Patterson, Murray

المصدر: Journal of Computational Biology ; volume 30, issue 4, page 469-491 ; ISSN 1557-8666

الاتاحة: http://dx.doi.org/10.1089/cmb.2022.0424
https://www.liebertpub.com/doi/full-xml/10.1089/cmb.2022.0424
https://www.liebertpub.com/doi/pdf/10.1089/cmb.2022.0424

المؤلفون: Chourasia, Prakash, Ali, Sarwan, Ciccolella, Simone, Della Vedova, Gianluca, Patterson, Murray

المصدر: Computational Advances in Bio and Medical Sciences ; Lecture Notes in Computer Science ; page 133-148 ; ISSN 0302-9743 1611-3349 ; ISBN 9783031175305 9783031175312

الاتاحة: http://dx.doi.org/10.1007/978-3-031-17531-2_11
https://link.springer.com/content/pdf/10.1007/978-3-031-17531-2_11

المؤلفون: PIROLA, YURI, Ciccolella, S, MARIANI, LEONARDO, CICCOLELLA, SIMONE

مصطلحات الفهرس: Filogenetica, Sequenziamento genom, Algortimi, Misure di similarita, Clustering, Phylogentic, Genomic Sequencing, Algorithm, Similarity measure, INF/01 - INFORMATICA, info:eu-repo/semantics/doctoralThesis

URL: http://hdl.handle.net/10281/364980
alleditors:PIROLA, YURI

المؤلفون: CICCOLELLA, SIMONE

المساهمون: Ciccolella, S, MARIANI, LEONARDO

مصطلحات موضوعية: Algorithm, Genomic Sequencing, Filogenetica, Similarity measure, INF/01 - INFORMATICA, Algortimi, Misure di similarita, Phylogentic, Sequenziamento genom, Clustering

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od______1299::6f34a196193f80552a5c5119803f2ec7
http://hdl.handle.net/10281/364980

المؤلفون: Avila Cartes, Jorge, Anand, Santosh, Ciccolella, Simone, Bonizzoni, Paola, Della Vedova, Gianluca

المصدر: GigaScience; 2023, Vol. 12 Issue 1, p1-11, 11p

مصطلحات موضوعية: DEEP learning, SARS-CoV-2, COVID-19 pandemic, WHOLE genome sequencing, CONVOLUTIONAL neural networks

المؤلفون: Ali, Sarwan, Ciccolella, Simone, Lucarella, Lorenzo, Vedova, Gianluca Della, Patterson, Murray

المصدر: Journal of Computational Biology ; volume 28, issue 11, page 1142-1155 ; ISSN 1557-8666

الاتاحة: http://dx.doi.org/10.1089/cmb.2021.0271
https://www.liebertpub.com/doi/full-xml/10.1089/cmb.2021.0271
https://www.liebertpub.com/doi/pdf/10.1089/cmb.2021.0271