المؤلفون: Wright, Sarah N, Colton, Scott, Schaffer, Leah V, Pillich, Rudolf T, Churas, Christopher, Pratt, Dexter, Ideker, Trey

المصدر: Molecular Systems Biology. 21(1)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Biotechnology, Genetics, Humans, Gene Regulatory Networks, Protein Interaction Maps, Protein Interaction Mapping, Computational Biology, Proteomics, Signal Transduction, Genomics, Gene Prioritization, Interaction Prediction, Interactome, Network, Systems Biology, Biochemistry and Cell Biology, Other Biological Sciences, Bioinformatics, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4345w0bn
https://escholarship.org/content/qt4345w0bn/qt4345w0bn.pdf

المؤلفون: Kratz, Anton, Kim, Minkyu, Kelly, Marcus, Zheng, Fan, Koczor, Christopher, Li, Jianfeng, Ono, Keiichiro, Qin, Yue, Churas, Christopher, Chen, Jing, Pillich, Rudolf, Park, Jisoo, Modak, Maya, Collier, Rachel, Licon, Kate, Pratt, Dexter, Sobol, Robert, Krogan, Nevan, Ideker, Trey

المصدر: Cell Systems. 14(6)

مصطلحات موضوعية: DNA damage response, double-strand break repair, multi-omics, protein assemblies, protein networks, single-strand break repair, systems biology, visualization, DNA Repair, Chromatin, DNA Damage

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0409m52n
https://escholarship.org/content/qt0409m52n/qt0409m52n.pdf

المؤلفون: Rosenthal, Sara Brin, Wright, Sarah N, Liu, Sophie, Churas, Christopher, Chilin-Fuentes, Daisy, Chen, Chi-Hua, Fisch, Kathleen M, Pratt, Dexter, Kreisberg, Jason F, Ideker, Trey

المصدر: Nature Protocols. 18(6)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, 2.1 Biological and endogenous factors, Good Health and Well Being, Humans, Gene Regulatory Networks, Software, Databases, Factual, Computational Biology, Chemical Sciences, Medical and Health Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9zg6006t
https://escholarship.org/content/qt9zg6006t/qt9zg6006t.pdf

المؤلفون: Pillich, Rudolf T, Chen, Jing, Churas, Christopher, Fong, Dylan, Gyori, Benjamin M, Ideker, Trey, Karis, Klas, Liu, Sophie N, Ono, Keiichiro, Pico, Alexander, Pratt, Dexter

المصدر: Bioinformatics. 39(3)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Networking and Information Technology R&D (NITRD), Underpinning research, 1.5 Resources and infrastructure (underpinning), Generic health relevance, Computational Biology, Software, Protein Interaction Maps, Publications, Databases, Factual, Internet, Mathematical Sciences, Information and Computing Sciences, Bioinformatics, Biological sciences, Information and computing sciences, Mathematical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/97f318s6
https://escholarship.org/content/qt97f318s6/qt97f318s6.pdf

المؤلفون: Martin-Sancho, Laura, Tripathi, Shashank, Rodriguez-Frandsen, Ariel, Pache, Lars, Sanchez-Aparicio, Maite, McGregor, Michael J, Haas, Kelsey M, Swaney, Danielle L, Nguyen, Thong T, Mamede, João I, Churas, Christopher, Pratt, Dexter, Rosenthal, Sara B, Riva, Laura, Nguyen, Courtney, Beltran-Raygoza, Nish, Soonthornvacharin, Stephen, Wang, Guojun, Jimenez-Morales, David, De Jesus, Paul D, Moulton, Hong M, Stein, David A, Chang, Max W, Benner, Chris, Ideker, Trey, Albrecht, Randy A, Hultquist, Judd F, Krogan, Nevan J, García-Sastre, Adolfo, Chanda, Sumit K

المصدر: Nature Microbiology. 6(10)

مصطلحات موضوعية: Microbiology, Biochemistry and Cell Biology, Biological Sciences, Influenza, Infectious Diseases, Emerging Infectious Diseases, Pneumonia & Influenza, Biodefense, 2.2 Factors relating to the physical environment, 1.1 Normal biological development and functioning, 2.1 Biological and endogenous factors, Infection, Antiviral Agents, Autophagy, GTPase-Activating Proteins, Host-Pathogen Interactions, Humans, Immune Evasion, Influenza A virus, Lysosomes, Protein Binding, Viral Matrix Proteins, Virus Replication, rab GTP-Binding Proteins, rab7 GTP-Binding Proteins, Medical Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9mc7n37n
https://escholarship.org/content/qt9mc7n37n/qt9mc7n37n.pdf

المؤلفون: Zheng, Fan, Kelly, Marcus R, Ramms, Dana J, Heintschel, Marissa L, Tao, Kai, Tutuncuoglu, Beril, Lee, John J, Ono, Keiichiro, Foussard, Helene, Chen, Michael, Herrington, Kari A, Silva, Erica, Liu, Sophie N, Chen, Jing, Churas, Christopher, Wilson, Nicholas, Kratz, Anton, Pillich, Rudolf T, Patel, Devin N, Park, Jisoo, Kuenzi, Brent, Yu, Michael K, Licon, Katherine, Pratt, Dexter, Kreisberg, Jason F, Kim, Minkyu, Swaney, Danielle L, Nan, Xiaolin, Fraley, Stephanie I, Gutkind, J Silvio, Krogan, Nevan J, Ideker, Trey

المصدر: Science (New York, N.Y.). 374(6563)

مصطلحات موضوعية: Humans, Neoplasms, Neoplasm Proteins, Protein Interaction Mapping, Mutation, Genes, Neoplasm, Protein Interaction Maps, Genetics, Rare Diseases, Cancer, 2.1 Biological and endogenous factors, Aetiology, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9839w2n4

المؤلفون: Pillich, Rudolf, Chen, Jing, Churas, Christopher, Liu, Sophie, Ono, Keiichiro, Otasek, David, Pratt, Dexter

المصدر: Current Protocols in Neuroscience. 1(9)

مصطلحات موضوعية: Cytoscape, JavaScript, NDEx, R, REST API, enrichment analysis, neighborhood query, network biology, network models, pathway, python, subnetwork, systems biology, Computational Biology, Ecosystem, Humans, Software, Workflow

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8784v72d

المؤلفون: Martin-Sancho, Laura, Lewinski, Mary K, Pache, Lars, Stoneham, Charlotte A, Yin, Xin, Becker, Mark E, Pratt, Dexter, Churas, Christopher, Rosenthal, Sara B, Liu, Sophie, Weston, Stuart, De Jesus, Paul D, O'Neill, Alan M, Gounder, Anshu P, Nguyen, Courtney, Pu, Yuan, Curry, Heather M, Oom, Aaron L, Miorin, Lisa, Rodriguez-Frandsen, Ariel, Zheng, Fan, Wu, Chunxiang, Xiong, Yong, Urbanowski, Matthew, Shaw, Megan L, Chang, Max W, Benner, Christopher, Hope, Thomas J, Frieman, Matthew B, García-Sastre, Adolfo, Ideker, Trey, Hultquist, Judd F, Guatelli, John, Chanda, Sumit K

المصدر: Molecular Cell. 81(12)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Coronaviruses Therapeutics and Interventions, Genetics, Emerging Infectious Diseases, Stem Cell Research, Coronaviruses, Infectious Diseases, Stem Cell Research - Embryonic - Human, Lung, 2.1 Biological and endogenous factors, 1.1 Normal biological development and functioning, Infection, Good Health and Well Being, Animals, Antigens, CD, Binding Sites, Cell Line, Tumor, Chlorocebus aethiops, Endoplasmic Reticulum, GPI-Linked Proteins, Gene Expression Regulation, Golgi Apparatus, HEK293 Cells, Host-Pathogen Interactions, Humans, Immunity, Innate, Interferon Regulatory Factors, Interferon Type I, Molecular Docking Simulation, Protein Binding, Protein Conformation, alpha-Helical, Protein Conformation, beta-Strand, Protein Interaction Domains and Motifs, SARS-CoV-2, Signal Transduction, Vero Cells, Viral Proteins, Virus Internalization, Virus Release, Virus Replication, BST2, ISG, Orf7a, innate immunity, interferon, viral evasion, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences, Health sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/44n6295p
https://escholarship.org/content/qt44n6295p/qt44n6295p.pdf

المؤلفون: Zheng, Fan, Zhang, She, Churas, Christopher, Pratt, Dexter, Bahar, Ivet, Ideker, Trey

المصدر: Genome Biology. 22(1)

مصطلحات موضوعية: Community detection, Multiscale, Persistent homology, Protein-protein interaction network, Resolution, Single-cell clustering, Systems biology, Algorithms, Animals, Computational Biology, Humans, Mice, SARS-CoV-2, Viral Proteins

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5h11h6sx
https://escholarship.org/content/qt5h11h6sx/qt5h11h6sx.pdf

المؤلفون: Singhal, Akshat, Cao, Song, Churas, Christopher, Pratt, Dexter, Fortunato, Santo, Zheng, Fan, Ideker, Trey

المصدر: PLOS Computational Biology. 16(10)

مصطلحات موضوعية: Biochemistry and Cell Biology, Bioinformatics and Computational Biology, Biological Sciences, Networking and Information Technology R&D (NITRD), Bioengineering, Biotechnology, Generic health relevance, Algorithms, Cluster Analysis, Computational Biology, Databases, Genetic, Humans, Protein Interaction Maps, Software, Mathematical Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8jp842fz
https://escholarship.org/content/qt8jp842fz/qt8jp842fz.pdf

المؤلفون: Wagner, Jeffrey R, Churas, Christopher P, Liu, Shuai, Swift, Robert V, Chiu, Michael, Shao, Chenghua, Feher, Victoria A, Burley, Stephen K, Gilson, Michael K, Amaro, Rommie E

المصدر: Structure. 27(8)

مصطلحات موضوعية: Medicinal and Biomolecular Chemistry, Chemical Sciences, Generic health relevance, Binding Sites, Computational Biology, Crystallography, X-Ray, Drug Design, Ligands, Molecular Docking Simulation, Protein Binding, Protein Conformation, Proteins, Structure-Activity Relationship, CELPP, D3R, RCSB PDB, community resource, drug design data resource, drug docking, pose prediction, Biological Sciences, Information and Computing Sciences, Biophysics, Biological sciences, Chemical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/69w569vh
https://escholarship.org/content/qt69w569vh/qt69w569vh.pdf

المؤلفون: Levinson, Maxwell Adam, Al Manir, Sadnan, Churas, Christopher, Schaffer, Leah, Pratt, Dexqter, Ideker, Trey, Ratclliffe, Sarah, Clark, Timothy

مصطلحات موضوعية: FAIR, Bridge2AI, provenance, cell map, genomic, CM4AI, FAIRSCAPE, EVI

Relation: https://doi.org/10.5281/zenodo.8343020; https://doi.org/10.5281/zenodo.8343021; oai:zenodo.org:8343021

الاتاحة: https://doi.org/10.5281/zenodo.8343021

المؤلفون: Haberl, Matthias G, Churas, Christopher, Tindall, Lucas, Boassa, Daniela, Phan, Sébastien, Bushong, Eric A, Madany, Matthew, Akay, Raffi, Deerinck, Thomas J, Peltier, Steven T, Ellisman, Mark H

المصدر: Nature Methods. 15(9)

مصطلحات موضوعية: Biological Sciences, Networking and Information Technology R&D (NITRD), Bioengineering, Biomedical Imaging, Neurosciences, Cloud Computing, Deep Learning, Image Processing, Computer-Assisted, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/701117ds

المؤلفون: Churas, Christopher, Perez, Alex J, Hakozaki, Hiroyuki, Wong, Willy, Lee, David, Peltier, Steven T, Ellisman, Mark H

المصدر: Bioinformatics. 33(19)

مصطلحات موضوعية: Bioengineering, Image Processing, Computer-Assisted, Microscopy, Electron, Organelles, Probability, Software, Workflow, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8qg9z269

المؤلفون: Wan, Xiaohua, Katchalski, Tsvi, Churas, Christopher, Ghosh, Sreya, Phan, Sebastien, Lawrence, Albert, Hao, Yu, Zhou, Ziying, Chen, Ruijuan, Chen, Yu, Zhang, Fa, Ellisman, Mark H

المصدر: Journal of Structural Biology. 198(2)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Bioengineering, Biomedical Imaging, Networking and Information Technology R&D (NITRD), Algorithms, Electron Microscope Tomography, Image Processing, Computer-Assisted, Phantoms, Imaging, Software, Electron, Microscope, Tomography, Simulator, Tilt, Series, Reconstruction, Tracking, Alignment, Block face, Inversion, Curvilinear, Warping, Zoology, Biophysics, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/8mf8q23q

المؤلفون: Clark, Timothy, Al Manir, Sadnan, Chen, Jing, Churas, Christopher, Jeffery, Erin, Levinson, Maxwell Adam, Pratt, Dexter, Ratcliffe, Sarah J, Sheffield, Nathan, Sheynkman, Gloria, Zhang, Aidong

مصطلحات موضوعية: CM4AI, Bridge2AI, Cell Maps, Data Dictionary

Relation: https://doi.org/10.5281/zenodo.7700184; https://doi.org/10.5281/zenodo.7700185; oai:zenodo.org:7700185

الاتاحة: https://doi.org/10.5281/zenodo.7700185

المؤلفون: Pillich, Rudolf T., Chen, Jing, Churas, Christopher, Liu, Sophie, Ono, Keiichiro, Otasek, David, Pratt, Dexter

المصدر: Current Protocols ; volume 1, issue 9 ; ISSN 2691-1299 2691-1299

الاتاحة: http://dx.doi.org/10.1002/cpz1.258
https://onlinelibrary.wiley.com/doi/pdf/10.1002/cpz1.258
https://onlinelibrary.wiley.com/doi/full-xml/10.1002/cpz1.258
https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpz1.258

المؤلفون: Wright, Sarah N, Colton, Scott, Schaffer, Leah V, Pillich, Rudolf T, Churas, Christopher, Pratt, Dexter, Ideker, Trey

المصدر: bioRxiv ; ISSN:2692-8205

Relation: https://doi.org/10.1101/2024.04.26.587073; https://pubmed.ncbi.nlm.nih.gov/38746239; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11092493/

الاتاحة: https://doi.org/10.1101/2024.04.26.587073
https://pubmed.ncbi.nlm.nih.gov/38746239
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11092493/

المؤلفون: Teague, Brian, Waterman, Michael S., Goldstein, Steven, Potamousis, Konstantinos, Zhou, Shiguo, Reslewic, Susan, Sarkar, Deepayan, Valouev, Anton, Churas, Christopher, Kidd, Jeffrey M., Kohn, Scott, Runnheim, Rodney, Lamers, Casey, Forrest, Dan, Newton, Michael A., Eichler, Evan E., Kent-First, Marijo, Surti, Urvashi, Livny, Miron, Schwartz, David C., Housman, David E.

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2010 Jun . 107(24), 10848-10853.

URL الوصول: https://www.jstor.org/stable/20723981

المؤلفون: Clark, Timothy, Schaffer, Leah, Obernier, K, Al Manir, Sadnan, Churas, Christopher, Dailamy, A, Doctor, Y, Forget, A, Hansen, JN, Hu, M, Lenkiewicz, J, Levinson, MA, Marquez, C, Mohan, J, Nourreddine, S, Niestroy, J, Pratt, D, Qian, G, Thaker, S, Belisle-Pipon, J-C, Brandt, C, Chen, J, Ding, Y, Fodeh, S, Krogan, N, Lundberg, E, Mali, P, Payne-Foster, P, Ratcliffe, S, Ravitsky, V, Sali, A, Schulz, W, Ideker, T

المساهمون: Levinson, Maxwell

مصطلحات موضوعية: Medicine, Health and Life Sciences

Relation: https://doi.org/10.18130/V3/DXWOS5

الاتاحة: https://doi.org/10.18130/V3/DXWOS5