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1Academic Journal
المؤلفون: Amit, Ido, Ardlie, Kristin, Arzuaga, Fabiana, Awandare, Gordon, Bader, Gary, Bernier, Alexander, Carninci, Piero, Donnelly, Stacey, Eils, Roland, Forrest, Alistair, Greely, Henry, Guigo, Roderic, Hacohen, Nir, Haniffa, Muzlifah, Kirby, Emily, Knoppers, Bartha, Kriegstein, Arnold, Lein, Ed, Linnarsson, Sten, Majumder, Partha, Merad, Miriam, Meyer, Kerstin, Mhlanga, Musa, Nolan, Garry, Ntusi, Ntobeko, Peer, Dana, Prabhakar, Shyam, Raven-Adams, Maili, Regev, Aviv, Rozenblatt-Rosen, Orit, Saha, Senjuti, Saltzman, Andrea, Shalek, Alex, Shin, Jay, Stunnenberg, Henk, Teichmann, Sarah, Tickle, Timothy, Villani, Alexandra-Chloe, Wells, Christine, Wold, Barbara, Yang, Huanming, Zhuang, Xiaowei
المصدر: Nature Communications. 15(1)
مصطلحات موضوعية: Humans, Atlases as Topic
وصف الملف: application/pdf
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2Academic Journal
المؤلفون: Pardo-Palacios, Francisco J, Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E, De María, Maite, Adams, Matthew S, Balderrama-Gutierrez, Gabriela, Behera, Amit K, Gonzalez Martinez, Jose M, Hunt, Toby, Lagarde, Julien, Liang, Cindy E, Li, Haoran, Meade, Marcus Jerryd, Moraga Amador, David A, Prjibelski, Andrey D, Birol, Inanc, Bostan, Hamed, Brooks, Ashley M, Çelik, Muhammed Hasan, Chen, Ying, Du, Mei RM, Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Li, Jian-Liang, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Nip, Ka Ming, Pertea, Mihaela, Ritchie, Matthew E, Sim, Andre D, Tang, Alison D, Wan, Yuk Kei, Wang, Changqing, Wong, Brandon Y, Yang, Chen, Barnes, If, Berry, Andrew E, Capella-Gutierrez, Salvador, Cousineau, Alyssa, Dhillon, Namrita, Fernandez-Gonzalez, Jose M, Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Götz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M, Panayotova, Nedka G, Paniagua, Alejandro, Repchevsky, Dmitry, Ren, Xingjie, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Smith, Melissa Laird, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid A, Carninci, Piero, Denslow, Nancy D, Guigó, Roderic, Hunter, Margaret E, Maehr, Rene, Shen, Yin, Tilgner, Hagen U, Wold, Barbara J, Vollmers, Christopher, Frankish, Adam, Au, Kin Fai, Sheynkman, Gloria M, Mortazavi, Ali, Conesa, Ana, Brooks, Angela N
المصدر: Nature Methods. 21(7)
مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Human Genome, Generic health relevance, Humans, Animals, Mice, RNA-Seq, Gene Expression Profiling, Transcriptome, Sequence Analysis, RNA, Molecular Sequence Annotation, Technology, Medical and Health Sciences, Developmental Biology, Biological sciences
وصف الملف: application/pdf
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3Report
المؤلفون: Amaral, Paulo, Carbonell-Sala, Silvia, De La Vega, Francisco M., Faial, Tiago, Frankish, Adam, Gingeras, Thomas, Guigo, Roderic, Harrow, Jennifer L, Hatzigeorgiou, Artemis G., Johnson, Rory, Murphy, Terence D., Pertea, Mihaela, Pruitt, Kim D., Pujar, Shashikant, Takahashi, Hazuki, Ulitsky, Igor, Varabyou, Ales, Wells, Christine A., Yandell, Mark, Carninci, Piero, Salzberg, Steven L.
مصطلحات موضوعية: Quantitative Biology - Genomics, Quantitative Biology - Quantitative Methods
URL الوصول: http://arxiv.org/abs/2303.13996
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4Academic Journal
المؤلفون: Kai Chikatoshi, Hume David A, Lin Chin-Yo, Krishnan SPT, Chowdhary Rajesh, Tan Sin, Huang Enli, Yang Liang, Schönbach Christian, Brahmachary Manisha, Kawai Jun, Carninci Piero, Hayashizaki Yoshihide, Bajic Vladimir B
المصدر: BMC Bioinformatics, Vol 7, Iss Suppl 5, p S8 (2006)
مصطلحات موضوعية: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5
وصف الملف: electronic resource
Relation: https://doaj.org/toc/1471-2105
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5Academic Journal
المؤلفون: Carninci Piero, Jun Kawai, Kazuo Murakami, Kenichi Matsubara, Kouji Satoh, Kouji Suzuki, Piero Carninci, Shigemi Iizumi, Shoshi Kikuchi, Toshifumi Nagata, Yasuhiro Ohotomo, Yoshihide Hayashizaki, kiji Doi, 佐藤 浩二, 土井 考爾, 大友 泰裕, 村上 和雄, 松原 謙一, 林崎 良英, 永田 俊文, 河合 純, 菊池 尚志, 鈴木 宏史, 飯泉 茂美
المصدر: Plant and Cell Physiology Supplement. 2006, :043
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6Academic Journal
المؤلفون: Carninci Piero, Hisako Ooka, Hitomi Yamada, Jun Kawai, Jung-Sook Lee, Kazuo Murakami, Ken-ichi Matsubara, Kimihisa Tasaki, Kouji Satoh, Shoshi Kikuchi, Yasuhiro Ohtomo, Yoshihide Hayashizaki, 佐藤 浩二, 大友 康裕, 大岡 久子, 山田 仁美, 村上 和雄, 松原 謙一, 林崎 良英, 河合 純, 田崎 公久, 菊池 尚志
المصدر: Plant and Cell Physiology Supplement. 2004, :474
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7Academic Journal
المؤلفون: Grapotte, Mathys, Saraswat, Manu, Bessière, Chloé, Menichelli, Christophe, Ramilowski, Jordan A, Severin, Jessica, Hayashizaki, Yoshihide, Itoh, Masayoshi, Tagami, Michihira, Murata, Mitsuyoshi, Kojima-Ishiyama, Miki, Noma, Shohei, Noguchi, Shuhei, Kasukawa, Takeya, Hasegawa, Akira, Suzuki, Harukazu, Nishiyori-Sueki, Hiromi, Frith, Martin C, FANTOM consortium, Chatelain, Clément, Carninci, Piero, de Hoon, Michiel JL, Wasserman, Wyeth W, Bréhélin, Laurent, Lecellier, Charles-Henri
المصدر: Nature communications. 12(1)
مصطلحات موضوعية: FANTOM consortium, Animals, Humans, Mice, Neurodegenerative Diseases, Computational Biology, Base Sequence, Microsatellite Repeats, Polymorphism, Genetic, Genome, Human, Transcription Initiation Site, Enhancer Elements, Genetic, Promoter Regions, Genetic, High-Throughput Nucleotide Sequencing, Transcription Initiation, Genetic, A549 Cells, Deep Learning, Neural Networks, Computer, Clinical Research, Human Genome, Genetics, Generic health relevance
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/2k83137q
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8Academic Journal
المؤلفون: Arakawa Takahiro, Carninci Piero, Suzuki Harukazu, Kawai Jun, Kubosaki Atsutaka, Saito Rintaro, Arner Erik, Kratz Anton, Tomita Masaru, Hayashizaki Yoshihide, Daub Carsten O
المصدر: BMC Genomics, Vol 11, Iss 1, p 257 (2010)
مصطلحات موضوعية: Biotechnology, TP248.13-248.65, Genetics, QH426-470
وصف الملف: electronic resource
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9Academic Journal
المؤلفون: Daub Carsten O, Fukuda Shiro, Katayama Shintaro, Sandelin Albin, Takahashi Yukari, Nakamura Mari, Kawaji Hideya, Kai Chikatoshi, Kawai Jun, Yasuda Jun, Carninci Piero, Hayashizaki Yoshihide
المصدر: BMC Genomics, Vol 9, Iss 1, p 157 (2008)
مصطلحات موضوعية: Biotechnology, TP248.13-248.65, Genetics, QH426-470
وصف الملف: electronic resource
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10Academic Journal
المؤلفون: Kawai Jun, Frith Martin C, Kurita Takio, Okamura-Oho Yuko, Shimokawa Kazuro, Carninci Piero, Hayashizaki Yoshihide
المصدر: BMC Bioinformatics, Vol 8, Iss 1, p 161 (2007)
مصطلحات موضوعية: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5
وصف الملف: electronic resource
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11Academic Journal
المؤلفون: Ariura, Masaru, Solberg, Therese, Ishizu, Hirotsugu, Takahashi, Hazuki, Carninci, Piero, Siomi, Haruhiko, Iwasaki, Yuka W.
المساهمون: Government of Japan Ministry of Education Culture Sports Science and Technology, Japan Agency for Medical Research and Development, Japan Society for the Promotion of Science, Japan Science and Technology Agency
المصدر: Cell Reports ; volume 43, issue 12, page 115020 ; ISSN 2211-1247
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12Academic Journal
المؤلفون: Tian, Chi, Zhang, Yuntian, Tong, Yihan, Kock, Kian Hong, Sim, Donald Yuhui, Liu, Fei, Dong, Jiaqi, Jing, Zhixuan, Wang, Wenjing, Gao, Junbin, Tan, Le Min, Han, Kyung Yeon, Tomofuji, Yoshihiko, Nakano, Masahiro, Buyamin, Eliora Violain, Sonthalia, Radhika, Ando, Yoshinari, Hatano, Hiroaki, Sonehara, Kyuto, Charoensawan, Varodom, Majumder, Partha P., Matangkasombut, Ponpan, Carninci, Piero, Chambers, John C., Pithukpakorn, Manop, Suktitipat, Bhoom, Yamamoto, Kazuhiko, Rajagopalan, Deepa, Rayan, Nirmala Arul, Sankaran, Shvetha, Chantaraamporn, Juthamard, Chatterjee, Ankita, Ghosh, Supratim, Jevapatarakul, Damita, Nguantad, Sarintip, Sarkar, Sumanta, Thungsatianpun, Narita, Abe, Mai, Furukawa, Seiko, Inoue, Gyo, Myouzen, Keiko, Oh, Jin-Mi, Suzuki, Akari, Kojima, Miki, Kouno, Tsukasa, Lim, Jinyeong, Maitra, Arindam, Venkatesh, Prasanna Nori, Lin, Quy Xiao Xuan, Moody, Jonathan
المصدر: Nature Genetics ; ISSN 1061-4036 1546-1718
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13Academic Journal
المؤلفون: Carbonell Sala, Silvia, Perteghella, Tamara, Lagarde, Julien, Nishiyori, Hiromi, Palumbo, Emilio, Arnan Ros, Carme, Takahashi, Hazuki, Carninci, Piero, Uszczynska-Ratajczak, Barbara, Guigó Serra, Roderic
مصطلحات موضوعية: Data processing, Genomics, RNA sequencing, Transcriptomics
وصف الملف: application/pdf
Relation: Nat Commun. 2024 Jun 27;15(1):5278; http://hdl.handle.net/10230/61112
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14Academic Journal
المؤلفون: Agrawal, Saumya, Buyan, Andrey, Severin, Jessica, Koido, Masaru, Alam, Tanvir, Abugessaisa, Imad, Chang, Howard Y., Dostie, Josée, Itoh, Masayoshi, Kere, Juha, Kondo, Naoto, Li, Yunjing, Makeev, Vsevolod J., Mendez, Mickaël, Okazaki, Yasushi, Ramilowski, Jordan A., Sigorskikh, Andrey I., Strug, Lisa J., Yagi, Ken, Yasuzawa, Kayoko, Yip, Chi Wai, Hon, Chung Chau, Hoffman, Michael M., Terao, Chikashi, Kulakovskiy, Ivan V., Kasukawa, Takeya, Shin, Jay W., Carninci, Piero, de Hoon, Michiel J.L.
المساهمون: STEMM - Stem Cells and Metabolism Research Program, Juha Kere / Principal Investigator, Research Programs Unit
مصطلحات موضوعية: Biomedicine
وصف الملف: application/pdf
Relation: FANTOM6 was made possible by a Research Grant for RIKEN Center for Life Science Technologies, Division of Genomic Technologies (CLST DGT) and RIKEN Center for Integrative Medical Sciences (IMS) from the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan. This work was supported by the Natural Sciences and Engineering Research Council of Canada (RGPIN-2015-03948 to M.M.H.). I.V.K., A.B. and V.J.M. were supported by the Ministry of Science and Higher Education of the Russian Federation (Grant No. 075-15-2021-601). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. We thank Yari Ciani of the University of Trento and Roderic Guig\u00F3 of the Centre for Genomic Regulation for their insightful comments on the analysis and manuscript. We gratefully acknowledge the computational resources of the HOKUSAI supercomputer system provided by RIKEN under project number Q17377/Q18377/Q19377/Q20377, which enabled us to calculate the Hi-C interactions.; Agrawal , S , Buyan , A , Severin , J , Koido , M , Alam , T , Abugessaisa , I , Chang , H Y , Dostie , J , Itoh , M , Kere , J , Kondo , N , Li , Y , Makeev , V J , Mendez , M , Okazaki , Y , Ramilowski , J A , Sigorskikh , A I , Strug , L J , Yagi , K , Yasuzawa , K , Yip , C W , Hon , C C , Hoffman , M M , Terao , C , Kulakovskiy , I V , Kasukawa , T , Shin , J W , Carninci , P & de Hoon , M J L 2024 , ' Annotation of nuclear lncRNAs based on chromatin interactions ' , PLoS One , vol. 19 , no. 5 , e0295971 . https://doi.org/10.1371/journal.pone.0295971; http://hdl.handle.net/10138/576511; fb51ec84-4541-42c1-b8b8-f2516c90ab28; 85192338201; 001219428600010
الاتاحة: http://hdl.handle.net/10138/576511
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15Academic Journal
المؤلفون: Sweet Matthew, Hayashizaki Yoshihide, Okazaki Yasushi, Carninci Piero, Faulkner Geoffrey J, Ravasi Timothy, Wells Christine A, Wainwright Brandon J, Hume David A
المصدر: BMC Immunology, Vol 4, Iss 1, p 5 (2003)
مصطلحات موضوعية: Immunologic diseases. Allergy, RC581-607
وصف الملف: electronic resource
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16Report
المؤلفون: Regev, Aviv, Teichmann, Sarah, Rozenblatt-Rosen, Orit, Stubbington, Michael, Ardlie, Kristin, Amit, Ido, Arlotta, Paola, Bader, Gary, Benoist, Christophe, Biton, Moshe, Bodenmiller, Bernd, Bruneau, Benoit, Campbell, Peter, Carmichael, Mary, Carninci, Piero, Castelo-Soccio, Leslie, Clatworthy, Menna, Clevers, Hans, Conrad, Christian, Eils, Roland, Freeman, Jeremy, Fugger, Lars, Goettgens, Berthold, Graham, Daniel, Greka, Anna, Hacohen, Nir, Haniffa, Muzlifah, Helbig, Ingo, Heuckeroth, Robert, Kathiresan, Sekar, Kim, Seung, Klein, Allon, Knoppers, Bartha, Kriegstein, Arnold, Lander, Eric, Lee, Jane, Lein, Ed, Linnarsson, Sten, Macosko, Evan, MacParland, Sonya, Majovski, Robert, Majumder, Partha, Marioni, John, McGilvray, Ian, Merad, Miriam, Mhlanga, Musa, Naik, Shalin, Nawijn, Martijn, Nolan, Garry, Paten, Benedict, Pe'er, Dana, Philippakis, Anthony, Ponting, Chris, Quake, Steve, Rajagopal, Jayaraj, Rajewsky, Nikolaus, Reik, Wolf, Rood, Jennifer, Saeb-Parsy, Kourosh, Schiller, Herbert, Scott, Steve, Shalek, Alex, Shapiro, Ehud, Shin, Jay, Skeldon, Kenneth, Stratton, Michael, Streicher, Jenna, Stunnenberg, Henk, Tan, Kai, Taylor, Deanne, Thorogood, Adrian, Vallier, Ludovic, van Oudenaarden, Alexander, Watt, Fiona, Weicher, Wilko, Weissman, Jonathan, Wells, Andrew, Wold, Barbara, Xavier, Ramnik, Zhuang, Xiaowei, Committee, Human Cell Atlas Organizing
مصطلحات موضوعية: Quantitative Biology - Tissues and Organs
URL الوصول: http://arxiv.org/abs/1810.05192
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17Academic Journal
المؤلفون: Pierattini, Bianca, D'Agostino, Sabrina, Bon, Carlotta, Peruzzo, Omar, Alendar, Andrej, Codino, Azzurra, Ros, Gloria, Persichetti, Francesca, Sanges, Remo, Carninci, Piero, Santoro, Claudio, Espinoza, Stefano, Valentini, Paola, Pandolfini, Luca, Gustincich, Stefano
المساهمون: Pierattini, Bianca, D'Agostino, Sabrina, Bon, Carlotta, Peruzzo, Omar, Alendar, Andrej, Codino, Azzurra, Ros, Gloria, Persichetti, Francesca, Sanges, Remo, Carninci, Piero, Santoro, Claudio, Espinoza, Stefano, Valentini, Paola, Pandolfini, Luca, Gustincich, Stefano
مصطلحات موضوعية: MT: Non-coding RNA, N6-methyladenosine, Nanopore direct RNA sequencing, RNA therapeutic, SINEUP, lncRNA, m6A, translation
وصف الملف: ELETTRONICO
Relation: info:eu-repo/semantics/altIdentifier/pmid/37187707; info:eu-repo/semantics/altIdentifier/wos/WOS:001042875200001; volume:32; firstpage:402; lastpage:414; numberofpages:13; journal:MOLECULAR THERAPY NUCLEIC ACIDS; https://hdl.handle.net/11579/155763; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85153279564
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18Academic Journal
المؤلفون: Gasperini, Caterina, Tuntevski, Kiril, Beatini, Silvia, Pelizzoli, Roberta, Lo Van, Amanda, Mangoni, Damiano, Cossu, Rosa M, Pascarella, Giovanni, Bianchini, Paolo, Bielefeld, Pascal, Scarpato, Margherita, Pons-Espinal, Meritxell, Sanges, Remo, Diaspro, Alberto, Fitzsimons, Carlos P, Carninci, Piero, Gustincich, Stefano, De Pietri Tonelli, Davide
المساهمون: Gasperini, Caterina, Tuntevski, Kiril, Beatini, Silvia, Pelizzoli, Roberta, Lo Van, Amanda, Mangoni, Damiano, Cossu, Rosa M, Pascarella, Giovanni, Bianchini, Paolo, Bielefeld, Pascal, Scarpato, Margherita, Pons-Espinal, Meritxell, Sanges, Remo, Diaspro, Alberto, Fitzsimons, Carlos P, Carninci, Piero, Gustincich, Stefano, De Pietri Tonelli, Davide
مصطلحات موضوعية: Mili, Piwi-interacting RNAs, Piwil2, hippocampal neurogenesis, senescence, Settore BIO/13 - Biologia Applicata
Relation: info:eu-repo/semantics/altIdentifier/pmid/36472244; info:eu-repo/semantics/altIdentifier/wos/WOS:000896591700001; volume:24; issue:2; firstpage:1; lastpage:20; numberofpages:20; journal:EMBO REPORTS; https://hdl.handle.net/20.500.11767/132132; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85143302360; https://pubmed.ncbi.nlm.nih.gov/36472244/
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19Academic Journal
المؤلفون: Baillie, J Kenneth, Bretherick, Andrew, Haley, Christopher S, Clohisey, Sara, Gray, Alan, Neyton, Lucile PA, Barrett, Jeffrey, Stahl, Eli A, Tenesa, Albert, Andersson, Robin, Brown, J Ben, Faulkner, Geoffrey J, Lizio, Marina, Schaefer, Ulf, Daub, Carsten, Itoh, Masayoshi, Kondo, Naoto, Lassmann, Timo, Kawai, Jun, IIBDGC Consortium, Mole, Damian, Bajic, Vladimir B, Heutink, Peter, Rehli, Michael, Kawaji, Hideya, Sandelin, Albin, Suzuki, Harukazu, Satsangi, Jack, Wells, Christine A, Hacohen, Nir, Freeman, Thomas C, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair RR, Hume, David A
المصدر: PLoS computational biology. 14(3)
مصطلحات موضوعية: IIBDGC Consortium, Humans, Crohn Disease, Genetic Predisposition to Disease, Gene Expression Profiling, Genomics, Databases, Genetic, Promoter Regions, Genetic, Transcriptome, Databases, Genetic, Promoter Regions, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/4916h1xv
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20Academic Journal
المؤلفون: de Hoon, Michiel, Bonetti, Alessandro, Plessy, Charles, Ando, Yoshinari, Hon, Chung-Chau, Ishizu, Yuri, Itoh, Masayoshi, Kato, Sachi, Lin, Dongyan, Maekawa, Sho, Murata, Mitsuyoshi, Nishiyori, Hiromi, Shin, Jay W., Stolte, Jens, Suzuki, Ana Maria, Tagami, Michihira, Takahashi, Hazuki, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Kere, Juha, Carninci, Piero, Thongjuea, Supat
المساهمون: STEMM - Stem Cells and Metabolism Research Program, Juha Kere / Principal Investigator, Research Programs Unit, HUS Helsinki and Uusimaa Hospital District
مصطلحات موضوعية: ANALYSIS GENE-EXPRESSION, POL II, TRANSCRIPTION, DATABASE, ARCHIVE, ATLAS, Biochemistry, cell and molecular biology, Medical biotechnology, Biomedicine
وصف الملف: application/pdf
Relation: This work was supported by a grant-in-aid for Young Scientists B from the Japan Society for the Promotion of Science (JSPS KAKENHI grant number JP23710222) to M.d.H., a Research Grant from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) for the RIKEN Omics Science Center, a Research Grant from MEXT for the RIKEN Center for Life Science Technologies, and a Research Grant from MEXT for the RIKEN Center for Integrative Medical Sciences.; de Hoon , M , Bonetti , A , Plessy , C , Ando , Y , Hon , C-C , Ishizu , Y , Itoh , M , Kato , S , Lin , D , Maekawa , S , Murata , M , Nishiyori , H , Shin , J W , Stolte , J , Suzuki , A M , Tagami , M , Takahashi , H , Forrest , A R R , Hayashizaki , Y , Kere , J , Carninci , P & Thongjuea , S 2022 , ' Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs ' , Genome Research , vol. 32 , no. 9 , pp. 1727-1735 . https://doi.org/10.1101/gr.276647.122; http://hdl.handle.net/10138/358260; 0f37a116-e354-4710-b4f9-b9813fcd5baf; 000863738800007
الاتاحة: http://hdl.handle.net/10138/358260