المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/journal_contribution/Core_genome_trees_of_the_complete_whole-genome_sequences_downloaded_from_GenBank_/13652804

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s001

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Summary_statistics_per_reference_and_species_/13652816

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s005

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Strains_selected_as_references_for_mapping_/13652807

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s002

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Isolates_short-read_sequence_data_selected_for_mapping_/13652810

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s003

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/ANI_calculated_between_the_selected_reference_genomes_/13652813

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s004

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Phylogenetic_trees_of_the_reference_genomes_selected_for_each_species_/13652825

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s008

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/RF_and_MC_distances_/13652822

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s007

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Core_genome_phylogenetic_trees_per_reference_and_species_/13652828

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s009

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Mapping_and_SNP_statistics_per_reference_and_species_/13652819

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s006

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/_Phylogenetic_trees_per_reference_and_species_/13652831

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.s010

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Distribution_of_proportion_of_mapped_reads_depending_on_reference_choice_/13652837

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g002

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Comparison_of_RF_distances_against_ANI_calculated_between_the_reference_genomes_selected_for_each_species_/13652852

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g007

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Distribution_of_the_number_of_SNPs_depending_on_reference_choice_/13652846

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g005

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Overview_of_the_workflow_used_/13652834

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g001

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Comparison_of_Robinson-Foulds_RF_and_matching_clusters_MC_normalized_distances_calculated_between_trees_from_the_same_species_/13652849

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g006

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Distribution_of_the_average_depth_depending_on_reference_choice_/13652843

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g004

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Distribution_of_coverage_of_the_reference_genome_depending_on_reference_choice_/13652840

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g003

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Impact_of_reference_choice_on_phylogenetic_trees_of_i_S_i_i_marcescens_i_/13652864

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g011

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/dataset/Descriptive_statistics_of_topological_distances_per_species_/13652876

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.t002

المؤلفون: Carlos Valiente-Mullor (10042112), Beatriz Beamud (10042115), Iván Ansari (10042118), Carlos Francés-Cuesta (10042121), Neris García-González (10042124), Lorena Mejía (9434189), Paula Ruiz-Hueso (10042127), Fernando González-Candelas (41416)

مصطلحات موضوعية: Biochemistry, Genetics, Evolutionary Biology, Ecology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, SNP, HTS, short-read sequence data, reference genome

Relation: https://figshare.com/articles/figure/Impact_of_reference_choice_on_phylogenetic_trees_of_i_L_i_i_pneumophila_i_/13652855

الاتاحة: https://doi.org/10.1371/journal.pcbi.1008678.g008