المؤلفون: Ndiaye, Anna Julienne Selbé, Beye, Mamadou, Lo, Gora, Kacel, Idir, Sow, Aissatou, Leye, Nafissatou, Padane, Abdou, Mboup, Aminata, Diop-Ndiaye, Halimatou, Sokhna, Cheikh, Kane, Coumba Touré, Colson, Philippe, Fenollar, Florence, Mboup, Souleymane, Fournier, Pierre-Edouard

المساهمون: Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation Dakar, Sénégal (IRESSEF), Institut Hospitalier Universitaire Méditerranée Infection (IHU Marseille), Microbes évolution phylogénie et infections (MEPHI), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Hôpital Aristide-Le-Dantec, Vecteurs - Infections tropicales et méditerranéennes (VITROME), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut de Recherche Biomédicale des Armées Brétigny-sur-Orge (IRBA), CHU Aristide Le Dantec, ANR-10-IAHU-0003,Méditerranée Infection,I.H.U. Méditerranée Infection(2010)

المصدر: ISSN: 1999-4915 ; Viruses ; https://amu.hal.science/hal-04148651 ; Viruses, 2023, 15 (6), pp.1233. ⟨10.3390/v15061233⟩.

مصطلحات موضوعية: Senegal, SARS-CoV-2, genomic, epidemiology, SNPs, COVIDSeq, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system, [SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases, [SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases, [SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology

Relation: hal-04148651; https://amu.hal.science/hal-04148651; https://amu.hal.science/hal-04148651/document; https://amu.hal.science/hal-04148651/file/viruses-15-01233.pdf; IRD: fdi:010088211

الاتاحة: https://amu.hal.science/hal-04148651
https://amu.hal.science/hal-04148651/document
https://amu.hal.science/hal-04148651/file/viruses-15-01233.pdf
https://doi.org/10.3390/v15061233

المؤلفون: Chandni Radhakrishnan, Mohit Kumar Divakar, Abhinav Jain, Prasanth Viswanathan, Rahul C. Bhoyar, Bani Jolly, Mohamed Imran, Disha Sharma, Mercy Rophina, Gyan Ranjan, Paras Sehgal, Beena Philomina Jose, Rajendran Vadukkoot Raman, Thulaseedharan Nallaveettil Kesavan, Kalpana George, Sheela Mathew, Jayesh Kumar Poovullathil, Sajeeth Kumar Keeriyatt Govindan, Priyanka Raveendranadhan Nair, Shameer Vadekkandiyil, Vineeth Gladson, Midhun Mohan, Fairoz Cheriyalingal Parambath, Mohit Mangla, Afra Shamnath, Indian CoV2 Genomics & Genetic Epidemiology (IndiCovGEN) Consortium, Sridhar Sivasubbu, Vinod Scaria

المصدر: Frontiers in Genetics, Vol 12 (2021)

مصطلحات موضوعية: COVID-19, COVIDSeq, Kerala, genetic epidemiology, variants, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.630542/full; https://doaj.org/toc/1664-8021

URL الوصول: https://doaj.org/article/d3ffd3757e0b410d9c1551d410824254

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/journal_contribution/DRAGEN_COVIDSeq_test_pipeline_time_summary_for_each_task_/14047787

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s002

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/journal_contribution/Compilation_of_details_of_genetic_variants_with_reported_functional_relevance_/14047799

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s005

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/journal_contribution/Summary_of_functional_annotation_of_the_genetic_variants_reported_in_the_study_/14047796

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s004

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/journal_contribution/Data_summary_of_the_COVIDSeq_RT-PCR_and_custom_pipeline_analysis_/14047790

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s003

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/journal_contribution/Comparison_of_different_RNA_extraction_methods_and_detection_of_the_SARS-CoV-2_with_RT-PCR_and_COVIDSeq_test_/14047808

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s007

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/journal_contribution/GISAID_acknowledgement_table_for_global_genomes_used_in_the_study_/14047814

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s008

المؤلفون: Shuchen Feng, Sarah M Owens, Abhilasha Shrestha, Rachel Poretsky, Erica M Hartmann, George Wells

مصطلحات موضوعية: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, Emerging Infectious Diseases, Genetics, Human Genome, 3 Good Health and Well Being, Amplicon sequencing, Illumina COVIDseq, QIAseq DIRECT, RNA fragmentation, Sample processing methods, Wastewater SARS-CoV-2, Environmental Sciences

Relation: https://figshare.com/articles/journal_contribution/Intensity_of_sample_processing_methods_impacts_wastewater_SARS-CoV-2_whole_genome_amplicon_sequencing_outcomes/22802879

الاتاحة: https://doi.org/10.25417/uic.22802879.v1
https://figshare.com/articles/journal_contribution/Intensity_of_sample_processing_methods_impacts_wastewater_SARS-CoV-2_whole_genome_amplicon_sequencing_outcomes/22802879

المؤلفون: Ndiaye, A. J. S., Beye, M., Lo, G. R., Kacel, I., Sow, A., Leye, N., Padane, A., Mboup, A., Diop-Ndiaye, H., /Sokhna, Cheikh, Kane, C. T., Colson, P., Fenollar, F., Mboup, S., Fournier, P. E.

مصطلحات موضوعية: Senegal, SARS-CoV-2, genomic, epidemiology, SNPs, COVIDSeq

جغرافية الموضوع: SENEGAL

Relation: https://www.documentation.ird.fr/hor/fdi:010088211; oai:ird.fr:fdi:010088211; Ndiaye A. J. S., Beye M., Lo G. R., Kacel I., Sow A., Leye N., Padane A., Mboup A., Diop-Ndiaye H., Sokhna Cheikh, Kane C. T., Colson P., Fenollar F., Mboup S., Fournier P. E. Genomic epidemiology of SARS-CoV-2 in urban settings in Senegal. 2023, 15 (6), p. 1233 [13 p.]

الاتاحة: https://www.documentation.ird.fr/hor/fdi:010088211

المؤلفون: Chandni Radhakrishnan (10314779), Mohit Kumar Divakar (10156499), Abhinav Jain (1273302), Prasanth Viswanathan (10314782), Rahul C. Bhoyar (9267797), Bani Jolly (10156502), Mohamed Imran (9472778), Disha Sharma (576766), Mercy Rophina (10156508), Gyan Ranjan (10156505), Paras Sehgal (10156496), Beena Philomina Jose (10314785), Rajendran Vadukkoot Raman (10314788), Thulaseedharan Nallaveettil Kesavan (10314791), Kalpana George (10314794), Sheela Mathew (10314797), Jayesh Kumar Poovullathil (10314800), Sajeeth Kumar Keeriyatt Govindan (10314803), Priyanka Raveendranadhan Nair (10314806), Shameer Vadekkandiyil (10314809), Vineeth Gladson (10314812), Midhun Mohan (3621155), Fairoz Cheriyalingal Parambath (10314815), Mohit Mangla (10314818), Afra Shamnath (10314821), Indian CoV2 Genomics & Genetic Epidemiology (IndiCovGEN) Consortium (10314824), Sridhar Sivasubbu (67797), Vinod Scaria (19350)

مصطلحات موضوعية: Genetics, Genetic Engineering, Biomarkers, Developmental Genetics (incl. Sex Determination), Epigenetics (incl. Genome Methylation and Epigenomics), Gene Expression (incl. Microarray and other genome-wide approaches), Genome Structure and Regulation, Genomics, Genetically Modified Animals, Livestock Cloning, Gene and Molecular Therapy, COVID-19, COVIDSeq, Kerala, genetic epidemiology, variants

Relation: https://figshare.com/articles/dataset/Data_Sheet_4_Initial_Insights_Into_the_Genetic_Epidemiology_of_SARS-CoV-2_Isolates_From_Kerala_Suggest_Local_Spread_From_Limited_Introductions_PDF/14227535

الاتاحة: https://doi.org/10.3389/fgene.2021.630542.s004

المؤلفون: Chandni Radhakrishnan (10314779), Mohit Kumar Divakar (10156499), Abhinav Jain (1273302), Prasanth Viswanathan (10314782), Rahul C. Bhoyar (9267797), Bani Jolly (10156502), Mohamed Imran (9472778), Disha Sharma (576766), Mercy Rophina (10156508), Gyan Ranjan (10156505), Paras Sehgal (10156496), Beena Philomina Jose (10314785), Rajendran Vadukkoot Raman (10314788), Thulaseedharan Nallaveettil Kesavan (10314791), Kalpana George (10314794), Sheela Mathew (10314797), Jayesh Kumar Poovullathil (10314800), Sajeeth Kumar Keeriyatt Govindan (10314803), Priyanka Raveendranadhan Nair (10314806), Shameer Vadekkandiyil (10314809), Vineeth Gladson (10314812), Midhun Mohan (3621155), Fairoz Cheriyalingal Parambath (10314815), Mohit Mangla (10314818), Afra Shamnath (10314821), Indian CoV2 Genomics & Genetic Epidemiology (IndiCovGEN) Consortium (10314824), Sridhar Sivasubbu (67797), Vinod Scaria (19350)

مصطلحات موضوعية: Genetics, Genetic Engineering, Biomarkers, Developmental Genetics (incl. Sex Determination), Epigenetics (incl. Genome Methylation and Epigenomics), Gene Expression (incl. Microarray and other genome-wide approaches), Genome Structure and Regulation, Genomics, Genetically Modified Animals, Livestock Cloning, Gene and Molecular Therapy, COVID-19, COVIDSeq, Kerala, genetic epidemiology, variants

Relation: https://figshare.com/articles/figure/Image_1_Initial_Insights_Into_the_Genetic_Epidemiology_of_SARS-CoV-2_Isolates_From_Kerala_Suggest_Local_Spread_From_Limited_Introductions_tif/14227553

الاتاحة: https://doi.org/10.3389/fgene.2021.630542.s010

المؤلفون: Chandni Radhakrishnan (10314779), Mohit Kumar Divakar (10156499), Abhinav Jain (1273302), Prasanth Viswanathan (10314782), Rahul C. Bhoyar (9267797), Bani Jolly (10156502), Mohamed Imran (9472778), Disha Sharma (576766), Mercy Rophina (10156508), Gyan Ranjan (10156505), Paras Sehgal (10156496), Beena Philomina Jose (10314785), Rajendran Vadukkoot Raman (10314788), Thulaseedharan Nallaveettil Kesavan (10314791), Kalpana George (10314794), Sheela Mathew (10314797), Jayesh Kumar Poovullathil (10314800), Sajeeth Kumar Keeriyatt Govindan (10314803), Priyanka Raveendranadhan Nair (10314806), Shameer Vadekkandiyil (10314809), Vineeth Gladson (10314812), Midhun Mohan (3621155), Fairoz Cheriyalingal Parambath (10314815), Mohit Mangla (10314818), Afra Shamnath (10314821), Indian CoV2 Genomics & Genetic Epidemiology (IndiCovGEN) Consortium (10314824), Sridhar Sivasubbu (67797), Vinod Scaria (19350)

مصطلحات موضوعية: Genetics, Genetic Engineering, Biomarkers, Developmental Genetics (incl. Sex Determination), Epigenetics (incl. Genome Methylation and Epigenomics), Gene Expression (incl. Microarray and other genome-wide approaches), Genome Structure and Regulation, Genomics, Genetically Modified Animals, Livestock Cloning, Gene and Molecular Therapy, COVID-19, COVIDSeq, Kerala, genetic epidemiology, variants

Relation: https://figshare.com/articles/dataset/Table_3_Initial_Insights_Into_the_Genetic_Epidemiology_of_SARS-CoV-2_Isolates_From_Kerala_Suggest_Local_Spread_From_Limited_Introductions_XLSX/14227562

الاتاحة: https://doi.org/10.3389/fgene.2021.630542.s013

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/figure/Coverage_plots_for_37_samples_that_were_inconclusive_and_pan-sarbeco_by_RT-PCR_and_detected_positive_for_SARS-CoV-2_by_sequencing_/14047781

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.s001

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/figure/Variant_number_per_genome_and_their_annotation_/14047829

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.g004

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/figure/Concordance_among_replicate_samples_considered_in_the_analysis_/14047823

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.g002

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/figure/The_line_plot_for_the_mean_coverage_of_SARS-CoV-2_genome_/14047826

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.g003

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/figure/Phylogenetic_distribution_of_PANGOLIN_lineages_in_COVIDseq_genomes_/14047835

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.g006

المؤلفون: Rahul C. Bhoyar (9267797), Abhinav Jain (1273302), Paras Sehgal (10156496), Mohit Kumar Divakar (10156499), Disha Sharma (576766), Mohamed Imran (9472778), Bani Jolly (10156502), Gyan Ranjan (10156505), Mercy Rophina (10156508), Sumit Sharma (332282), Sanjay Siwach (10156511), Kavita Pandhare (9981943), Swayamprabha Sahoo (10156514), Maheswata Sahoo (10156517), Ananya Nayak (10156520), Jatindra Nath Mohanty (10156523), Jayashankar Das (6677942), Sudhir Bhandari (9741437), Sandeep K. Mathur (10156526), Anshul Kumar (6492089), Rahul Sahlot (10156529), Pallavali Rojarani (10156532), Juturu Vijaya Lakshmi (10156535), Avileli Surekha (10156538), Pulala Chandra Sekhar (10156541), Shelly Mahajan (10156544), Shet Masih (3830167), Pawan Singh (2237203), Vipin Kumar (169835), Blessy Jose (10156547), Vidur Mahajan (10156550), Vivek Gupta (382944), Rakesh Gupta (596449), Prabhakar Arumugam (10156553), Anjali Singh (604972), Ananya Nandy (5475641), Ragavendran P. V. (10156556), Rakesh Mohan Jha (10156559), Anupama Kumari (535572), Sheetal Gandotra (243872), Vivek Rao (268812), Mohammed Faruq (9098361), Sanjeev Kumar (279609), Betsy Reshma G. (10156562), Narendra Varma G. (10156565), Shuvra Shekhar Roy (10156568), Antara Sengupta (10156571), Sabyasachi Chattopadhyay (5150816), Khushboo Singhal (10156574), Shalini Pradhan (10156577), Diksha Jha (5150825), Salwa Naushin (10156580), Saruchi Wadhwa (6925479), Nishu Tyagi (9098333), Mukta Poojary (5228186), Vinod Scaria (19350), Sridhar Sivasubbu (67797)

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Biotechnology, Ecology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, RT-PCR, 73 novel variants, S 4 sequencing flow cell, SARS-CoV -2, SARS-CoV -2 samples, approach, epidemiology, coronavirus disease 2019, lineages B .1.112, High throughput detection, COVIDSeq next-generation sequencing

Relation: https://figshare.com/articles/figure/The_coverage_plot_across_the_SARS-CoV-2_genome_/14047838

الاتاحة: https://doi.org/10.1371/journal.pone.0247115.g007

المؤلفون: Chandni Radhakrishnan, Mohit Kumar Divakar, Abhinav Jain, Prasanth Viswanathan, Rahul C. Bhoyar, Bani Jolly, Mohamed Imran, Disha Sharma, Mercy Rophina, Gyan Ranjan, Paras Sehgal, Beena Philomina Jose, Rajendran Vadukkoot Raman, Thulaseedharan Nallaveettil Kesavan, Kalpana George, Sheela Mathew, Jayesh Kumar Poovullathil, Sajeeth Kumar Keeriyatt Govindan, Priyanka Raveendranadhan Nair, Shameer Vadekkandiyil, Vineeth Gladson, Midhun Mohan, Fairoz Cheriyalingal Parambath, Mohit Mangla, Afra Shamnath, Indian CoV2 Genomics & Genetic Epidemiology, Sridhar Sivasubbu, Vinod Scaria

مصطلحات موضوعية: Genetics, Genetic Engineering, Biomarkers, Developmental Genetics (incl. Sex Determination), Epigenetics (incl. Genome Methylation and Epigenomics), Gene Expression (incl. Microarray and other genome-wide approaches), Genome Structure and Regulation, Genomics, Genetically Modified Animals, Livestock Cloning, Gene and Molecular Therapy, COVID-19, COVIDSeq, Kerala, genetic epidemiology, variants

Relation: https://figshare.com/articles/dataset/Table_1_Initial_Insights_Into_the_Genetic_Epidemiology_of_SARS-CoV-2_Isolates_From_Kerala_Suggest_Local_Spread_From_Limited_Introductions_XLSX/14227556

الاتاحة: https://doi.org/10.3389/fgene.2021.630542.s011
https://figshare.com/articles/dataset/Table_1_Initial_Insights_Into_the_Genetic_Epidemiology_of_SARS-CoV-2_Isolates_From_Kerala_Suggest_Local_Spread_From_Limited_Introductions_XLSX/14227556